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Gene : OPCL1 A. thaliana

DB identifier  ? AT1G20510 Secondary Identifier  ? locus:2034392
Name  ? OPC-8:0 CoA ligase1 Brief Description  OPC-8:0 CoA ligase1
TAIR Computational Description  OPC-8:0 CoA ligase1;(source:Araport11)
TAIR Curator Summary  Encodes an OPC-8:CoA ligase involved in jasmonic acid biosynthesis.
TAIR Short Description  OPC-8:0 CoA ligase1
TAIR Aliases  OPCL1

1 Gene Rifs

1 Organism

27 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2760  
Location: Chr1:7103362-7106121 reverse strand

Gene models - OPCL1 AT1G20510

? Gene models

Transcripts: 3  Exons: 10  Introns: 7 

Overlapping Features

? Genome features that overlap coordinates of this Gene

12 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
4CLL5_ARATH developmental stage In seedlings, present at low levels in the vascular system of cotyledons, leaves, hypocotyls, roots and hydathodes (PubMed:18267944). In roots, accumulates mostly in the zone of cell division proximal to the root tip, in the vascular system and primordial cells of lateral roots and, at low levels, in some superficial cells of the elongation zone (PubMed:18267944). In mature plants, observed in the vasculature of leaves, stems, and roots, with a progressive expression increase in mesophyll cells during aging (PubMed:18267944). Weakly detected in the young parts of the bolting stem (PubMed:18267944).
4CLL5_ARATH function Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors (PubMed:16963437, PubMed:18267944). Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively (PubMed:16963437, PubMed:18267944). Follows a two-step reaction mechanism, wherein the carboxylate substrate first undergoes adenylation by ATP, followed by a thioesterification in the presence of CoA to yield the final CoA thioester (By similarity).
A0A1P8AUM2_ARATH F4HST9_ARATH 4CLL5_ARATH similarity Belongs to the ATP-dependent AMP-binding enzyme family.
4CLL5_ARATH tissue specificity Expressed at low levels in seedlings, cotyledons, leaves, hypocotyls and roots.

3 Proteins

Function

Gene Ontology

cellular component
peroxisome  ? ECO  
molecular function
ATP binding  ? ECO  
decanoate-CoA ligase activity  ? ECO  
CoA-ligase activity  ? ECO  
biological process
response to bacterium  ? ECO  
response to wounding  ? ECO  
jasmonic acid biosynthetic process  ? ECO  
response to jasmonic acid  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets