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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G20410:CDS:16 | 76 | Chr1: 7079049-7079124 | Arabidopsis thaliana |
AT1G20410:CDS:15 | 56 | Chr1: 7079225-7079280 | Arabidopsis thaliana |
AT1G20410:CDS:14 | 61 | Chr1: 7079354-7079414 | Arabidopsis thaliana |
AT1G20410:CDS:13 | 74 | Chr1: 7079508-7079581 | Arabidopsis thaliana |
AT1G20410:CDS:12 | 81 | Chr1: 7079702-7079782 | Arabidopsis thaliana |
AT1G20410:CDS:11 | 75 | Chr1: 7079893-7079967 | Arabidopsis thaliana |
AT1G20410:CDS:10 | 120 | Chr1: 7080055-7080174 | Arabidopsis thaliana |
AT1G20410:CDS:9 | 81 | Chr1: 7080252-7080332 | Arabidopsis thaliana |
AT1G20410:CDS:8 | 69 | Chr1: 7080420-7080488 | Arabidopsis thaliana |
AT1G20410:CDS:7 | 72 | Chr1: 7080653-7080724 | Arabidopsis thaliana |
AT1G20410:CDS:6 | 47 | Chr1: 7080852-7080898 | Arabidopsis thaliana |
AT1G20410:CDS:5 | 112 | Chr1: 7081407-7081518 | Arabidopsis thaliana |
AT1G20410:CDS:4 | 109 | Chr1: 7081690-7081798 | Arabidopsis thaliana |
AT1G20410:CDS:2 | 335 | Chr1: 7081892-7082226 | Arabidopsis thaliana |
AT1G20410:CDS:1 | 147 | Chr1: 7082358-7082504 | Arabidopsis thaliana |
AT1G20410:CDS:16.1 | 76 | Chr1: 7079049-7079124 | Arabidopsis thaliana |
AT1G20410:CDS:15.1 | 56 | Chr1: 7079225-7079280 | Arabidopsis thaliana |
AT1G20410:CDS:14.1 | 61 | Chr1: 7079354-7079414 | Arabidopsis thaliana |
AT1G20410:CDS:13.1 | 74 | Chr1: 7079508-7079581 | Arabidopsis thaliana |
AT1G20410:CDS:12.1 | 81 | Chr1: 7079702-7079782 | Arabidopsis thaliana |
AT1G20410:CDS:11.1 | 75 | Chr1: 7079893-7079967 | Arabidopsis thaliana |
AT1G20410:CDS:10.1 | 120 | Chr1: 7080055-7080174 | Arabidopsis thaliana |
AT1G20410:CDS:9.1 | 81 | Chr1: 7080252-7080332 | Arabidopsis thaliana |
AT1G20410:CDS:8.1 | 69 | Chr1: 7080420-7080488 | Arabidopsis thaliana |
AT1G20410:CDS:7.1 | 72 | Chr1: 7080653-7080724 | Arabidopsis thaliana |
AT1G20410:CDS:6.1 | 47 | Chr1: 7080852-7080898 | Arabidopsis thaliana |
AT1G20410:CDS:5.1 | 112 | Chr1: 7081407-7081518 | Arabidopsis thaliana |
AT1G20410:CDS:4.1 | 109 | Chr1: 7081690-7081798 | Arabidopsis thaliana |
AT1G20410:CDS:3 | 23 | Chr1: 7081892-7081914 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G20410:exon:19 | 321 | Chr1: 7078804-7079124 | Arabidopsis thaliana |
AT1G20410:exon:4 | 335 | Chr1: 7081892-7082226 | Arabidopsis thaliana |
AT1G20410:exon:2 | 200 | Chr1: 7082358-7082557 | Arabidopsis thaliana |
AT1G20410:exon:18 | 227 | Chr1: 7078898-7079124 | Arabidopsis thaliana |
AT1G20410:exon:17 | 56 | Chr1: 7079225-7079280 | Arabidopsis thaliana |
AT1G20410:exon:16 | 61 | Chr1: 7079354-7079414 | Arabidopsis thaliana |
AT1G20410:exon:15 | 74 | Chr1: 7079508-7079581 | Arabidopsis thaliana |
AT1G20410:exon:14 | 81 | Chr1: 7079702-7079782 | Arabidopsis thaliana |
AT1G20410:exon:13 | 75 | Chr1: 7079893-7079967 | Arabidopsis thaliana |
AT1G20410:exon:12 | 120 | Chr1: 7080055-7080174 | Arabidopsis thaliana |
AT1G20410:exon:11 | 81 | Chr1: 7080252-7080332 | Arabidopsis thaliana |
AT1G20410:exon:10 | 69 | Chr1: 7080420-7080488 | Arabidopsis thaliana |
AT1G20410:exon:9 | 72 | Chr1: 7080653-7080724 | Arabidopsis thaliana |
AT1G20410:exon:8 | 47 | Chr1: 7080852-7080898 | Arabidopsis thaliana |
AT1G20410:exon:7 | 112 | Chr1: 7081407-7081518 | Arabidopsis thaliana |
AT1G20410:exon:6 | 109 | Chr1: 7081690-7081798 | Arabidopsis thaliana |
AT1G20410:exon:5 | 77 | Chr1: 7081892-7081968 | Arabidopsis thaliana |
AT1G20410:exon:3 | 160 | Chr1: 7082067-7082226 | Arabidopsis thaliana |
AT1G20410:exon:1 | 209 | Chr1: 7082358-7082566 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G20410:five_prime_UTR:1 | 53 | Chr1: 7082505-7082557 | Arabidopsis thaliana |
AT1G20410:five_prime_UTR:4 | 54 | Chr1: 7081915-7081968 | Arabidopsis thaliana |
AT1G20410:five_prime_UTR:3 | 160 | Chr1: 7082067-7082226 | Arabidopsis thaliana |
AT1G20410:five_prime_UTR:2 | 209 | Chr1: 7082358-7082566 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G20410.1 | 1813 | Chr1: 7078804-7082557 |
AT1G20410.2 | 1630 | Chr1: 7078898-7082566 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G20410:three_prime_UTR:2 | 245 | Chr1: 7078804-7079048 | Arabidopsis thaliana |
AT1G20410:three_prime_UTR:1 | 151 | Chr1: 7078898-7079048 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8AU06_ARATH A0A178WCI1_ARATH | similarity | Belongs to the pseudouridine synthase Pus10 family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
tRNA pseudouridine(55) synthase activity | ECO |
RNA binding | ECO |
biological process | |
pseudouridine synthesis | ECO |
tRNA processing | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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