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Gene : AT1G18340 A. thaliana

DB identifier  ? AT1G18340 Secondary Identifier  ? locus:2014124
Brief Description  basal transcription factor complex subunit-like protein
TAIR Computational Description  basal transcription factor complex subunit-like protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  basal transcription factor complex subunit-related

0 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2489  
Location: Chr1:6311443-6313931 reverse strand

Gene models - AT1G18340 AT1G18340

? Gene models

Transcripts: 1  Exons: 11  Introns: 10 

Overlapping Features

? Genome features that overlap coordinates of this Gene

12 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
TFB4_ARATH function Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription.
TFB4_ARATH similarity Belongs to the TFB4 family.

1 Proteins

Function

Gene Ontology

cellular component
transcription factor TFIIH holo complex  ? ECO  
transcription factor TFIIH core complex  ? ECO  
molecular function
metal ion binding  ? ECO  
biological process
nucleotide-excision repair  ? ECO  
regulation of DNA-templated transcription  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets