External Links
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17640:CDS:6 | 429 | Chr1: 6067394-6067822 | Arabidopsis thaliana |
AT1G17640:CDS:5 | 170 | Chr1: 6067906-6068075 | Arabidopsis thaliana |
AT1G17640:CDS:4 | 109 | Chr1: 6068152-6068260 | Arabidopsis thaliana |
AT1G17640:CDS:3 | 164 | Chr1: 6068355-6068518 | Arabidopsis thaliana |
AT1G17640:CDS:2 | 41 | Chr1: 6068730-6068770 | Arabidopsis thaliana |
AT1G17640:CDS:1 | 197 | Chr1: 6068902-6069098 | Arabidopsis thaliana |
AT1G17640:CDS:6.1 | 429 | Chr1: 6067394-6067822 | Arabidopsis thaliana |
AT1G17640:CDS:5.1 | 170 | Chr1: 6067906-6068075 | Arabidopsis thaliana |
AT1G17640:CDS:4.1 | 109 | Chr1: 6068152-6068260 | Arabidopsis thaliana |
AT1G17640:CDS:3.1 | 164 | Chr1: 6068355-6068518 | Arabidopsis thaliana |
AT1G17640:CDS:2.1 | 41 | Chr1: 6068730-6068770 | Arabidopsis thaliana |
AT1G17640:CDS:1.1 | 197 | Chr1: 6068902-6069098 | Arabidopsis thaliana |
AT1G17640:CDS:6.2 | 429 | Chr1: 6067394-6067822 | Arabidopsis thaliana |
AT1G17640:CDS:5.2 | 170 | Chr1: 6067906-6068075 | Arabidopsis thaliana |
AT1G17640:CDS:4.2 | 109 | Chr1: 6068152-6068260 | Arabidopsis thaliana |
AT1G17640:CDS:3.2 | 164 | Chr1: 6068355-6068518 | Arabidopsis thaliana |
AT1G17640:CDS:2.2 | 41 | Chr1: 6068730-6068770 | Arabidopsis thaliana |
AT1G17640:CDS:1.2 | 197 | Chr1: 6068902-6069098 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17630:exon:3 | 239 | Chr1: 6066913-6067151 | Arabidopsis thaliana |
AT1G17640:exon:10 | 737 | Chr1: 6067086-6067822 | Arabidopsis thaliana |
AT1G17640:exon:1 | 126 | Chr1: 6069267-6069392 | Arabidopsis thaliana |
AT1G17640:exon:4 | 209 | Chr1: 6068902-6069110 | Arabidopsis thaliana |
AT1G17640:exon:2 | 55 | Chr1: 6069203-6069257 | Arabidopsis thaliana |
AT1G17640:exon:9 | 670 | Chr1: 6067153-6067822 | Arabidopsis thaliana |
AT1G17640:exon:8 | 170 | Chr1: 6067906-6068075 | Arabidopsis thaliana |
AT1G17640:exon:7 | 109 | Chr1: 6068152-6068260 | Arabidopsis thaliana |
AT1G17640:exon:6 | 164 | Chr1: 6068355-6068518 | Arabidopsis thaliana |
AT1G17640:exon:5 | 41 | Chr1: 6068730-6068770 | Arabidopsis thaliana |
AT1G17640:exon:3 | 356 | Chr1: 6068902-6069257 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17640:five_prime_UTR:1 | 126 | Chr1: 6069267-6069392 | Arabidopsis thaliana |
AT1G17640:five_prime_UTR:4 | 12 | Chr1: 6069099-6069110 | Arabidopsis thaliana |
AT1G17640:five_prime_UTR:2 | 55 | Chr1: 6069203-6069257 | Arabidopsis thaliana |
AT1G17640:five_prime_UTR:3 | 159 | Chr1: 6069099-6069257 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G17630 | locus:2007888 | AT1G17630 | 2670 | Chr1: 6064482-6067151 | A. thaliana | Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11) | Encodes a PPR protein involved in mitochondrial functioning. Mutants suppress cell wall defects caused by C17 chemical inhibitor. Mutants are defective in cytochrome c maturation and activation of mitochondrial retrograde signalling. | Pentatricopeptide repeat (PPR-like) superfamily protein | CWM1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G17630.1 | 2548 | Chr1: 6064482-6067151 |
AT1G17640.1 | 1556 | Chr1: 6067086-6069392 |
AT1G17640.3 | 1418 | Chr1: 6067153-6069257 |
AT1G17640.2 | 1510 | Chr1: 6067153-6069257 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17630:three_prime_UTR:2 | 239 | Chr1: 6066913-6067151 | Arabidopsis thaliana |
AT1G17640:three_prime_UTR:2 | 308 | Chr1: 6067086-6067393 | Arabidopsis thaliana |
AT1G17640:three_prime_UTR:1 | 241 | Chr1: 6067153-6067393 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
RNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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