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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17360:CDS:1 | 59 | Chr1: 5947441-5947499 | Arabidopsis thaliana |
AT1G17360:CDS:2 | 186 | Chr1: 5947582-5947767 | Arabidopsis thaliana |
AT1G17360:CDS:3 | 101 | Chr1: 5947856-5947956 | Arabidopsis thaliana |
AT1G17360:CDS:4 | 28 | Chr1: 5948053-5948080 | Arabidopsis thaliana |
AT1G17360:CDS:5 | 153 | Chr1: 5948166-5948318 | Arabidopsis thaliana |
AT1G17360:CDS:6 | 818 | Chr1: 5948398-5949215 | Arabidopsis thaliana |
AT1G17360:CDS:7 | 545 | Chr1: 5949366-5949910 | Arabidopsis thaliana |
AT1G17360:CDS:8 | 1168 | Chr1: 5950009-5951176 | Arabidopsis thaliana |
AT1G17360:CDS:9 | 128 | Chr1: 5951272-5951399 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17360:exon:1 | 527 | Chr1: 5946448-5946974 | Arabidopsis thaliana |
AT1G17360:exon:2 | 118 | Chr1: 5947382-5947499 | Arabidopsis thaliana |
AT1G17360:exon:3 | 186 | Chr1: 5947582-5947767 | Arabidopsis thaliana |
AT1G17360:exon:4 | 101 | Chr1: 5947856-5947956 | Arabidopsis thaliana |
AT1G17360:exon:5 | 28 | Chr1: 5948053-5948080 | Arabidopsis thaliana |
AT1G17360:exon:6 | 153 | Chr1: 5948166-5948318 | Arabidopsis thaliana |
AT1G17360:exon:7 | 818 | Chr1: 5948398-5949215 | Arabidopsis thaliana |
AT1G17360:exon:8 | 545 | Chr1: 5949366-5949910 | Arabidopsis thaliana |
AT1G17360:exon:9 | 1168 | Chr1: 5950009-5951176 | Arabidopsis thaliana |
AT1G17360:exon:10 | 290 | Chr1: 5951272-5951561 | Arabidopsis thaliana |
AT1G05303:exon:1 | 262 | Chr1: 5946498-5946759 | Arabidopsis thaliana |
AT1G17370:exon:15 | 573 | Chr1: 5951542-5952114 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17360:five_prime_UTR:1 | 527 | Chr1: 5946448-5946974 | Arabidopsis thaliana |
AT1G17360:five_prime_UTR:2 | 59 | Chr1: 5947382-5947440 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G05303 | AT1G05303 | 262 | Chr1: 5946498-5946759 | A. thaliana | None;(source:Araport11) | NULL | ||||
AT1G17370 | locus:2018794 | UBP1B | oligouridylate binding protein 1B | 3602 | Chr1: 5951542-5955143 | A. thaliana | oligouridylate binding protein 1B;(source:Araport11) | Encodes an RNA�binding protein involved in stress granule formation. Regulated by a transposable element small RNA. | oligouridylate binding protein 1B | UBP1B |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G17360.1 | 3934 | Chr1: 5946448-5951561 |
AT1G17370.2 | 1763 | Chr1: 5951542-5955037 |
AT1G17370.1 | 1878 | Chr1: 5951542-5955143 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17360:three_prime_UTR:1 | 162 | Chr1: 5951400-5951561 | Arabidopsis thaliana |
AT1G17370:three_prime_UTR:1 | 300 | Chr1: 5951542-5951841 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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