External Links
- Aracyc
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- Plant Proteome Database
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- GeneVisible
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17040:CDS:1 | 159 | Chr1: 5825109-5825267 | Arabidopsis thaliana |
AT1G17040:CDS:3 | 192 | Chr1: 5825483-5825674 | Arabidopsis thaliana |
AT1G17040:CDS:4 | 210 | Chr1: 5825761-5825970 | Arabidopsis thaliana |
AT1G17040:CDS:5 | 153 | Chr1: 5826056-5826208 | Arabidopsis thaliana |
AT1G17040:CDS:6 | 165 | Chr1: 5826297-5826461 | Arabidopsis thaliana |
AT1G17040:CDS:7 | 180 | Chr1: 5826571-5826750 | Arabidopsis thaliana |
AT1G17040:CDS:8 | 269 | Chr1: 5826845-5827113 | Arabidopsis thaliana |
AT1G17040:CDS:9 | 163 | Chr1: 5827183-5827345 | Arabidopsis thaliana |
AT1G17040:CDS:10 | 338 | Chr1: 5827442-5827779 | Arabidopsis thaliana |
AT1G17040:CDS:12 | 78 | Chr1: 5827852-5827929 | Arabidopsis thaliana |
AT1G17040:CDS:13 | 19 | Chr1: 5828038-5828056 | Arabidopsis thaliana |
AT1G17040:CDS:1.1 | 159 | Chr1: 5825109-5825267 | Arabidopsis thaliana |
AT1G17040:CDS:3.1 | 192 | Chr1: 5825483-5825674 | Arabidopsis thaliana |
AT1G17040:CDS:4.1 | 210 | Chr1: 5825761-5825970 | Arabidopsis thaliana |
AT1G17040:CDS:5.1 | 153 | Chr1: 5826056-5826208 | Arabidopsis thaliana |
AT1G17040:CDS:6.1 | 165 | Chr1: 5826297-5826461 | Arabidopsis thaliana |
AT1G17040:CDS:7.1 | 180 | Chr1: 5826571-5826750 | Arabidopsis thaliana |
AT1G17040:CDS:8.1 | 269 | Chr1: 5826845-5827113 | Arabidopsis thaliana |
AT1G17040:CDS:9.1 | 163 | Chr1: 5827183-5827345 | Arabidopsis thaliana |
AT1G17040:CDS:11 | 342 | Chr1: 5827442-5827783 | Arabidopsis thaliana |
AT1G17040:CDS:1.2 | 159 | Chr1: 5825109-5825267 | Arabidopsis thaliana |
AT1G17040:CDS:2 | 30 | Chr1: 5825339-5825368 | Arabidopsis thaliana |
AT1G17040:CDS:3.2 | 192 | Chr1: 5825483-5825674 | Arabidopsis thaliana |
AT1G17040:CDS:4.2 | 210 | Chr1: 5825761-5825970 | Arabidopsis thaliana |
AT1G17040:CDS:5.2 | 153 | Chr1: 5826056-5826208 | Arabidopsis thaliana |
AT1G17040:CDS:6.2 | 165 | Chr1: 5826297-5826461 | Arabidopsis thaliana |
AT1G17040:CDS:7.2 | 180 | Chr1: 5826571-5826750 | Arabidopsis thaliana |
AT1G17040:CDS:8.2 | 269 | Chr1: 5826845-5827113 | Arabidopsis thaliana |
AT1G17040:CDS:9.2 | 163 | Chr1: 5827183-5827345 | Arabidopsis thaliana |
AT1G17040:CDS:10.1 | 338 | Chr1: 5827442-5827779 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17040:exon:1 | 497 | Chr1: 5824771-5825267 | Arabidopsis thaliana |
AT1G17040:exon:12 | 488 | Chr1: 5827442-5827929 | Arabidopsis thaliana |
AT1G17040:exon:15 | 229 | Chr1: 5828038-5828266 | Arabidopsis thaliana |
AT1G17040:exon:2 | 420 | Chr1: 5824848-5825267 | Arabidopsis thaliana |
AT1G17040:exon:3 | 30 | Chr1: 5825339-5825368 | Arabidopsis thaliana |
AT1G17040:exon:4 | 192 | Chr1: 5825483-5825674 | Arabidopsis thaliana |
AT1G17040:exon:5 | 210 | Chr1: 5825761-5825970 | Arabidopsis thaliana |
AT1G17040:exon:6 | 153 | Chr1: 5826056-5826208 | Arabidopsis thaliana |
AT1G17040:exon:7 | 165 | Chr1: 5826297-5826461 | Arabidopsis thaliana |
AT1G17040:exon:8 | 180 | Chr1: 5826571-5826750 | Arabidopsis thaliana |
AT1G17040:exon:9 | 269 | Chr1: 5826845-5827113 | Arabidopsis thaliana |
AT1G17040:exon:10 | 163 | Chr1: 5827183-5827345 | Arabidopsis thaliana |
AT1G17040:exon:11 | 338 | Chr1: 5827442-5827779 | Arabidopsis thaliana |
AT1G17040:exon:13 | 78 | Chr1: 5827852-5827929 | Arabidopsis thaliana |
AT1G17040:exon:14 | 196 | Chr1: 5828038-5828233 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17040:five_prime_UTR:1 | 338 | Chr1: 5824771-5825108 | Arabidopsis thaliana |
AT1G17040:five_prime_UTR:2 | 261 | Chr1: 5824848-5825108 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G17040.1 | 2474 | Chr1: 5824771-5828266 |
AT1G17040.3 | 2546 | Chr1: 5824771-5828266 |
AT1G17040.2 | 2394 | Chr1: 5824848-5828233 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17040:three_prime_UTR:4 | 210 | Chr1: 5828057-5828266 | Arabidopsis thaliana |
AT1G17040:three_prime_UTR:1 | 146 | Chr1: 5827784-5827929 | Arabidopsis thaliana |
AT1G17040:three_prime_UTR:2 | 229 | Chr1: 5828038-5828266 | Arabidopsis thaliana |
AT1G17040:three_prime_UTR:3 | 177 | Chr1: 5828057-5828233 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SHA_ARATH-3 SHA_ARATH SHA_ARATH-2 | tissue specificity | Expressed in roots, leaves, stems and flowers. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
DNA-binding transcription factor activity | ECO |
biological process | |
signal transduction | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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