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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G16790:CDS:1 | 435 | Chr1: 5744638-5745072 | Arabidopsis thaliana |
AT1G16800:CDS:25 | 23 | Chr1: 5745523-5745545 | Arabidopsis thaliana |
AT1G16800:CDS:24 | 1049 | Chr1: 5745659-5746707 | Arabidopsis thaliana |
AT1G16800:CDS:23 | 239 | Chr1: 5746798-5747036 | Arabidopsis thaliana |
AT1G16800:CDS:22 | 126 | Chr1: 5747201-5747326 | Arabidopsis thaliana |
AT1G16800:CDS:21 | 66 | Chr1: 5747405-5747470 | Arabidopsis thaliana |
AT1G16800:CDS:20 | 917 | Chr1: 5747551-5748467 | Arabidopsis thaliana |
AT1G16800:CDS:19 | 403 | Chr1: 5748604-5749006 | Arabidopsis thaliana |
AT1G16800:CDS:18 | 1133 | Chr1: 5749275-5750407 | Arabidopsis thaliana |
AT1G16800:CDS:17 | 271 | Chr1: 5750507-5750777 | Arabidopsis thaliana |
AT1G16800:CDS:16 | 294 | Chr1: 5750933-5751226 | Arabidopsis thaliana |
AT1G16800:CDS:15 | 138 | Chr1: 5751518-5751655 | Arabidopsis thaliana |
AT1G16800:CDS:14 | 109 | Chr1: 5751783-5751891 | Arabidopsis thaliana |
AT1G16800:CDS:12 | 579 | Chr1: 5751991-5752569 | Arabidopsis thaliana |
AT1G16800:CDS:10 | 74 | Chr1: 5752983-5753056 | Arabidopsis thaliana |
AT1G16800:CDS:9 | 123 | Chr1: 5753165-5753287 | Arabidopsis thaliana |
AT1G16800:CDS:8 | 131 | Chr1: 5753394-5753524 | Arabidopsis thaliana |
AT1G16800:CDS:6 | 149 | Chr1: 5753611-5753759 | Arabidopsis thaliana |
AT1G16800:CDS:5 | 147 | Chr1: 5753865-5754011 | Arabidopsis thaliana |
AT1G16800:CDS:4 | 80 | Chr1: 5754122-5754201 | Arabidopsis thaliana |
AT1G16800:CDS:3 | 117 | Chr1: 5754291-5754407 | Arabidopsis thaliana |
AT1G16800:CDS:2 | 385 | Chr1: 5754611-5754995 | Arabidopsis thaliana |
AT1G16800:CDS:1 | 128 | Chr1: 5755136-5755263 | Arabidopsis thaliana |
AT1G16800:CDS:25.1 | 23 | Chr1: 5745523-5745545 | Arabidopsis thaliana |
AT1G16800:CDS:24.1 | 1049 | Chr1: 5745659-5746707 | Arabidopsis thaliana |
AT1G16800:CDS:23.1 | 239 | Chr1: 5746798-5747036 | Arabidopsis thaliana |
AT1G16800:CDS:22.1 | 126 | Chr1: 5747201-5747326 | Arabidopsis thaliana |
AT1G16800:CDS:21.1 | 66 | Chr1: 5747405-5747470 | Arabidopsis thaliana |
AT1G16800:CDS:20.1 | 917 | Chr1: 5747551-5748467 | Arabidopsis thaliana |
AT1G16800:CDS:19.1 | 403 | Chr1: 5748604-5749006 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G16780:exon:1 | 22 | Chr1: 5744615-5744636 | Arabidopsis thaliana |
AT1G16790:exon:1 | 925 | Chr1: 5744335-5745259 | Arabidopsis thaliana |
AT1G16800:exon:28 | 1062 | Chr1: 5744484-5745545 | Arabidopsis thaliana |
AT1G16800:exon:13 | 579 | Chr1: 5751991-5752569 | Arabidopsis thaliana |
AT1G16800:exon:1 | 333 | Chr1: 5755136-5755468 | Arabidopsis thaliana |
AT1G16800:exon:27 | 288 | Chr1: 5745258-5745545 | Arabidopsis thaliana |
AT1G16800:exon:8 | 154 | Chr1: 5753606-5753759 | Arabidopsis thaliana |
AT1G16800:exon:26 | 178 | Chr1: 5745368-5745545 | Arabidopsis thaliana |
AT1G16800:exon:25 | 1049 | Chr1: 5745659-5746707 | Arabidopsis thaliana |
AT1G16800:exon:24 | 239 | Chr1: 5746798-5747036 | Arabidopsis thaliana |
AT1G16800:exon:23 | 126 | Chr1: 5747201-5747326 | Arabidopsis thaliana |
AT1G16800:exon:22 | 66 | Chr1: 5747405-5747470 | Arabidopsis thaliana |
AT1G16800:exon:21 | 917 | Chr1: 5747551-5748467 | Arabidopsis thaliana |
AT1G16800:exon:20 | 403 | Chr1: 5748604-5749006 | Arabidopsis thaliana |
AT1G16800:exon:19 | 1133 | Chr1: 5749275-5750407 | Arabidopsis thaliana |
AT1G16800:exon:18 | 271 | Chr1: 5750507-5750777 | Arabidopsis thaliana |
AT1G16800:exon:17 | 294 | Chr1: 5750933-5751226 | Arabidopsis thaliana |
AT1G16800:exon:16 | 138 | Chr1: 5751518-5751655 | Arabidopsis thaliana |
AT1G16800:exon:15 | 109 | Chr1: 5751783-5751891 | Arabidopsis thaliana |
AT1G16800:exon:14 | 190 | Chr1: 5751991-5752180 | Arabidopsis thaliana |
AT1G16800:exon:12 | 179 | Chr1: 5752391-5752569 | Arabidopsis thaliana |
AT1G16800:exon:11 | 74 | Chr1: 5752983-5753056 | Arabidopsis thaliana |
AT1G16800:exon:10 | 123 | Chr1: 5753165-5753287 | Arabidopsis thaliana |
AT1G16800:exon:9 | 131 | Chr1: 5753394-5753524 | Arabidopsis thaliana |
AT1G16800:exon:7 | 149 | Chr1: 5753611-5753759 | Arabidopsis thaliana |
AT1G16800:exon:6 | 147 | Chr1: 5753865-5754011 | Arabidopsis thaliana |
AT1G16800:exon:5 | 80 | Chr1: 5754122-5754201 | Arabidopsis thaliana |
AT1G16800:exon:4 | 117 | Chr1: 5754291-5754407 | Arabidopsis thaliana |
AT1G16800:exon:3 | 385 | Chr1: 5754611-5754995 | Arabidopsis thaliana |
AT1G16800:exon:2 | 128 | Chr1: 5755136-5755263 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G16780:five_prime_UTR:1 | 22 | Chr1: 5744615-5744636 | Arabidopsis thaliana |
AT1G16790:five_prime_UTR:1 | 303 | Chr1: 5744335-5744637 | Arabidopsis thaliana |
AT1G16800:five_prime_UTR:1 | 205 | Chr1: 5755264-5755468 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G16780 | locus:2015626 | VHP2;2 | 5169 | Chr1: 5739468-5744636 | A. thaliana | Inorganic H pyrophosphatase family protein;(source:Araport11) | Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves. | Inorganic H pyrophosphatase family protein | AtVHP2;2, VHP2;2 | |
AT1G16790 | locus:2015611 | AT1G16790 | 925 | Chr1: 5744335-5745259 | A. thaliana | ribosomal protein-like protein;(source:Araport11) | NULL | ribosomal protein-related |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G16780.3 | 2766 | Chr1: 5739468-5744636 |
AT1G16780.2 | 2793 | Chr1: 5739468-5744636 |
AT1G16790.1 | 925 | Chr1: 5744335-5745259 |
AT1G16800.2 | 7925 | Chr1: 5744484-5755468 |
AT1G16800.1 | 6610 | Chr1: 5745258-5755263 |
AT1G16800.3 | 6626 | Chr1: 5745368-5755263 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G16790:three_prime_UTR:1 | 187 | Chr1: 5745073-5745259 | Arabidopsis thaliana |
AT1G16800:three_prime_UTR:3 | 1039 | Chr1: 5744484-5745522 | Arabidopsis thaliana |
AT1G16800:three_prime_UTR:2 | 265 | Chr1: 5745258-5745522 | Arabidopsis thaliana |
AT1G16800:three_prime_UTR:1 | 155 | Chr1: 5745368-5745522 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
helicase activity | ECO |
hydrolase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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