Lists
This Gene is in 2 lists:
External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 33, Exons: 16, Five Prime UTRs: 5, Genes: 2, mRNAs: 8, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15950:CDS:1 | 133 | Chr1: 5478855-5478987 | Arabidopsis thaliana |
AT1G15950:CDS:2 | 155 | Chr1: 5479109-5479263 | Arabidopsis thaliana |
AT1G15950:CDS:3 | 186 | Chr1: 5479792-5479977 | Arabidopsis thaliana |
AT1G15950:CDS:5 | 353 | Chr1: 5480154-5480506 | Arabidopsis thaliana |
AT1G15950:CDS:10 | 208 | Chr1: 5481708-5481915 | Arabidopsis thaliana |
AT1G15950:CDS:1.1 | 133 | Chr1: 5478855-5478987 | Arabidopsis thaliana |
AT1G15950:CDS:2.1 | 155 | Chr1: 5479109-5479263 | Arabidopsis thaliana |
AT1G15950:CDS:3.1 | 186 | Chr1: 5479792-5479977 | Arabidopsis thaliana |
AT1G15950:CDS:6 | 357 | Chr1: 5480154-5480510 | Arabidopsis thaliana |
AT1G15950:CDS:1.2 | 133 | Chr1: 5478855-5478987 | Arabidopsis thaliana |
AT1G15950:CDS:2.2 | 155 | Chr1: 5479109-5479263 | Arabidopsis thaliana |
AT1G15950:CDS:3.2 | 186 | Chr1: 5479792-5479977 | Arabidopsis thaliana |
AT1G15950:CDS:5.1 | 353 | Chr1: 5480154-5480506 | Arabidopsis thaliana |
AT1G15950:CDS:8 | 25 | Chr1: 5480865-5480889 | Arabidopsis thaliana |
AT1G15950:CDS:1.3 | 133 | Chr1: 5478855-5478987 | Arabidopsis thaliana |
AT1G15950:CDS:2.3 | 155 | Chr1: 5479109-5479263 | Arabidopsis thaliana |
AT1G15950:CDS:3.3 | 186 | Chr1: 5479792-5479977 | Arabidopsis thaliana |
AT1G15950:CDS:5.2 | 353 | Chr1: 5480154-5480506 | Arabidopsis thaliana |
AT1G15950:CDS:7 | 58 | Chr1: 5480837-5480894 | Arabidopsis thaliana |
AT1G15950:CDS:1.4 | 133 | Chr1: 5478855-5478987 | Arabidopsis thaliana |
AT1G15950:CDS:2.4 | 155 | Chr1: 5479109-5479263 | Arabidopsis thaliana |
AT1G15950:CDS:3.4 | 186 | Chr1: 5479792-5479977 | Arabidopsis thaliana |
AT1G15950:CDS:5.3 | 353 | Chr1: 5480154-5480506 | Arabidopsis thaliana |
AT1G15950:CDS:10.1 | 208 | Chr1: 5481708-5481915 | Arabidopsis thaliana |
AT1G15950:CDS:1.5 | 133 | Chr1: 5478855-5478987 | Arabidopsis thaliana |
AT1G15950:CDS:2.5 | 155 | Chr1: 5479109-5479263 | Arabidopsis thaliana |
AT1G15950:CDS:3.5 | 186 | Chr1: 5479792-5479977 | Arabidopsis thaliana |
AT1G15950:CDS:5.4 | 353 | Chr1: 5480154-5480506 | Arabidopsis thaliana |
AT1G15950:CDS:9 | 109 | Chr1: 5481708-5481816 | Arabidopsis thaliana |
AT1G15950:CDS:11 | 78 | Chr1: 5481872-5481949 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15950:exon:1 | 6 | Chr1: 5478603-5478608 | Arabidopsis thaliana |
AT1G15950:exon:2 | 285 | Chr1: 5478703-5478987 | Arabidopsis thaliana |
AT1G15950:exon:13 | 473 | Chr1: 5481708-5482180 | Arabidopsis thaliana |
AT1G15950:exon:8 | 357 | Chr1: 5480154-5480510 | Arabidopsis thaliana |
AT1G15950:exon:10 | 25 | Chr1: 5480865-5480889 | Arabidopsis thaliana |
AT1G15950:exon:9 | 58 | Chr1: 5480837-5480894 | Arabidopsis thaliana |
AT1G15950:exon:3 | 234 | Chr1: 5478754-5478987 | Arabidopsis thaliana |
AT1G15950:exon:4 | 155 | Chr1: 5479109-5479263 | Arabidopsis thaliana |
AT1G15950:exon:11 | 109 | Chr1: 5481708-5481816 | Arabidopsis thaliana |
AT1G15950:exon:14 | 294 | Chr1: 5481872-5482165 | Arabidopsis thaliana |
AT1G15950:exon:5 | 437 | Chr1: 5479287-5479723 | Arabidopsis thaliana |
AT1G15950:exon:6 | 186 | Chr1: 5479792-5479977 | Arabidopsis thaliana |
AT1G15950:exon:7 | 353 | Chr1: 5480154-5480506 | Arabidopsis thaliana |
AT1G15950:exon:12 | 208 | Chr1: 5481708-5481915 | Arabidopsis thaliana |
AT1G05213:exon:1 | 2457 | Chr1: 5479274-5481730 | Arabidopsis thaliana |
AT1G15960:exon:13 | 855 | Chr1: 5481665-5482519 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15950:five_prime_UTR:1 | 6 | Chr1: 5478603-5478608 | Arabidopsis thaliana |
AT1G15950:five_prime_UTR:2 | 152 | Chr1: 5478703-5478854 | Arabidopsis thaliana |
AT1G15950:five_prime_UTR:3 | 101 | Chr1: 5478754-5478854 | Arabidopsis thaliana |
AT1G15950:five_prime_UTR:4 | 437 | Chr1: 5479287-5479723 | Arabidopsis thaliana |
AT1G15950:five_prime_UTR:5 | 6 | Chr1: 5479792-5479797 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G05213 | AT1G05213 | 2457 | Chr1: 5479274-5481730 | A. thaliana | Natural antisense transcript overlaps with AT1G15950;(source:Araport11) | NULL | ||||
AT1G15960 | locus:2200437 | NRAMP6 | NRAMP metal ion transporter 6 | 4441 | Chr1: 5481665-5486105 | A. thaliana | NRAMP metal ion transporter 6;(source:Araport11) | Member of Nramp2 family. NRAMP6 cooperates with NRAMP1 in Mn utilization. | NRAMP metal ion transporter 6 | ATNRAMP6, NRAMP6 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G15950.1 | 1458 | Chr1: 5478603-5482180 |
AT1G15950.6 | 932 | Chr1: 5478754-5480510 |
AT1G15950.5 | 953 | Chr1: 5478754-5480889 |
AT1G15950.4 | 986 | Chr1: 5478754-5480894 |
AT1G15950.3 | 1136 | Chr1: 5478754-5481915 |
AT1G15950.2 | 1331 | Chr1: 5478754-5482165 |
AT1G15950.7 | 1184 | Chr1: 5479287-5481915 |
AT1G15960.1 | 3160 | Chr1: 5481665-5486105 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15950:three_prime_UTR:1 | 265 | Chr1: 5481916-5482180 | Arabidopsis thaliana |
AT1G15950:three_prime_UTR:2 | 216 | Chr1: 5481950-5482165 | Arabidopsis thaliana |
AT1G15960:three_prime_UTR:1 | 537 | Chr1: 5481665-5482201 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
CCR1_ARATH | function | Involved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes. |
CCR1_ARATH | pathway | Aromatic compound metabolism; phenylpropanoid biosynthesis. |
CCR1_ARATH | similarity | Belongs to the NAD(P)-dependent epimerase/dehydratase family. Dihydroflavonol-4-reductase subfamily. |
CCR1_ARATH | tissue specificity | Expressed in leaves, stems and flowers. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | ECO |
cinnamoyl-CoA reductase activity | ECO |
biological process | |
circadian rhythm | ECO |
response to cold | ECO |
lignin biosynthetic process | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...