help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : CCR1 A. thaliana

DB identifier  ? AT1G15950 Secondary Identifier  ? locus:2200427
Name  ? cinnamoyl coa reductase 1 Brief Description  cinnamoyl coa reductase 1
TAIR Computational Description  cinnamoyl coa reductase 1;(source:Araport11)
TAIR Curator Summary  Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis. The mRNA is cell-to-cell mobile.
TAIR Short Description  cinnamoyl coa reductase 1
TAIR Aliases  ATCCR1, CCR1, IRX4

5 Gene Rifs

1 Organism

21 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3578  
Location: Chr1:5478603-5482180

Gene models - CCR1 AT1G15950

? Gene models

Transcripts: 7  Exons: 35  Introns: 28 

Overlapping Features

? Genome features that overlap coordinates of this Gene

21 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
CCR1_ARATH function Involved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes.
CCR1_ARATH pathway Aromatic compound metabolism; phenylpropanoid biosynthesis.
CCR1_ARATH similarity Belongs to the NAD(P)-dependent epimerase/dehydratase family. Dihydroflavonol-4-reductase subfamily.
CCR1_ARATH tissue specificity Expressed in leaves, stems and flowers.

6 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor  ? ECO  
cinnamoyl-CoA reductase activity  ? ECO  
biological process
circadian rhythm  ? ECO  
response to cold  ? ECO  
lignin biosynthetic process  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets