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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15740:CDS:1 | 216 | Chr1: 5411509-5411724 | Arabidopsis thaliana |
AT1G15740:CDS:2 | 129 | Chr1: 5411801-5411929 | Arabidopsis thaliana |
AT1G15740:CDS:3 | 208 | Chr1: 5412013-5412220 | Arabidopsis thaliana |
AT1G15740:CDS:4 | 147 | Chr1: 5412342-5412488 | Arabidopsis thaliana |
AT1G15740:CDS:5 | 75 | Chr1: 5412607-5412681 | Arabidopsis thaliana |
AT1G15740:CDS:6 | 72 | Chr1: 5412757-5412828 | Arabidopsis thaliana |
AT1G15740:CDS:7 | 75 | Chr1: 5412927-5413001 | Arabidopsis thaliana |
AT1G15740:CDS:8 | 72 | Chr1: 5413096-5413167 | Arabidopsis thaliana |
AT1G15740:CDS:9 | 72 | Chr1: 5413264-5413335 | Arabidopsis thaliana |
AT1G15740:CDS:10 | 72 | Chr1: 5413445-5413516 | Arabidopsis thaliana |
AT1G15740:CDS:11 | 72 | Chr1: 5413594-5413665 | Arabidopsis thaliana |
AT1G15740:CDS:12 | 144 | Chr1: 5413752-5413895 | Arabidopsis thaliana |
AT1G15740:CDS:13 | 72 | Chr1: 5413981-5414052 | Arabidopsis thaliana |
AT1G15740:CDS:14 | 147 | Chr1: 5414136-5414282 | Arabidopsis thaliana |
AT1G15740:CDS:15 | 185 | Chr1: 5414360-5414544 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15740:exon:1 | 146 | Chr1: 5410908-5411053 | Arabidopsis thaliana |
AT1G15740:exon:2 | 232 | Chr1: 5411493-5411724 | Arabidopsis thaliana |
AT1G15740:exon:3 | 129 | Chr1: 5411801-5411929 | Arabidopsis thaliana |
AT1G15740:exon:4 | 208 | Chr1: 5412013-5412220 | Arabidopsis thaliana |
AT1G15740:exon:5 | 147 | Chr1: 5412342-5412488 | Arabidopsis thaliana |
AT1G15740:exon:6 | 75 | Chr1: 5412607-5412681 | Arabidopsis thaliana |
AT1G15740:exon:7 | 72 | Chr1: 5412757-5412828 | Arabidopsis thaliana |
AT1G15740:exon:8 | 75 | Chr1: 5412927-5413001 | Arabidopsis thaliana |
AT1G15740:exon:9 | 72 | Chr1: 5413096-5413167 | Arabidopsis thaliana |
AT1G15740:exon:10 | 72 | Chr1: 5413264-5413335 | Arabidopsis thaliana |
AT1G15740:exon:11 | 72 | Chr1: 5413445-5413516 | Arabidopsis thaliana |
AT1G15740:exon:12 | 72 | Chr1: 5413594-5413665 | Arabidopsis thaliana |
AT1G15740:exon:13 | 144 | Chr1: 5413752-5413895 | Arabidopsis thaliana |
AT1G15740:exon:14 | 72 | Chr1: 5413981-5414052 | Arabidopsis thaliana |
AT1G15740:exon:15 | 147 | Chr1: 5414136-5414282 | Arabidopsis thaliana |
AT1G15740:exon:16 | 560 | Chr1: 5414360-5414919 | Arabidopsis thaliana |
AT1G15750:exon:27 | 483 | Chr1: 5414817-5415299 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15740:five_prime_UTR:1 | 146 | Chr1: 5410908-5411053 | Arabidopsis thaliana |
AT1G15740:five_prime_UTR:2 | 16 | Chr1: 5411493-5411508 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G15750 | locus:2036204 | TPL | TOPLESS | 6217 | Chr1: 5414817-5421033 | A. thaliana | Transducin family protein / WD-40 repeat family protein;(source:Araport11) | Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | Transducin family protein / WD-40 repeat family protein | TPL, WSIP1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G15740.1 | 2295 | Chr1: 5410908-5414919 |
AT1G15750.3 | 4165 | Chr1: 5414817-5420859 |
AT1G15750.1 | 4059 | Chr1: 5414817-5420860 |
AT1G15750.4 | 3899 | Chr1: 5414817-5420998 |
AT1G15750.2 | 3969 | Chr1: 5414817-5421033 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15740:three_prime_UTR:1 | 375 | Chr1: 5414545-5414919 | Arabidopsis thaliana |
AT1G15750:three_prime_UTR:1 | 269 | Chr1: 5414817-5415085 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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