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Gene : SHN1 A. thaliana

DB identifier  ? AT1G15360 Secondary Identifier  ? locus:2037698
Name  ? SHINE 1 Brief Description  Integrase-type DNA-binding superfamily protein
TAIR Computational Description  Integrase-type DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.
TAIR Short Description  Integrase-type DNA-binding superfamily protein
TAIR Aliases  AtSHN1, SHN1, WIN1

6 Gene Rifs

1 Organism

27 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1469  
Location: Chr1:5283268-5284736

Gene models - SHN1 AT1G15360

? Gene models

Transcripts: 2  Exons: 5  Introns: 3 

Overlapping Features

? Genome features that overlap coordinates of this Gene

6 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
WIN1_ARATH developmental stage Detected in sepals of very young closed buds. Later, expressed in sepals and petals veins and epidermis, as well as in developing gynoecium but not in stamens. At anthesis, confined to the gynoecium, commenced in the anther, and slightly expressed in the anther filament. When petals and sepals withered, strong expression at the bottom of the silique, in the abscission zone, and in the pedicel region below it. At silique maturity, detected in the same region but only at the nectaries.
WIN1_ARATH function Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).
WIN1_ARATH similarity Belongs to the AP2/ERF transcription factor family. ERF subfamily.
WIN1_ARATH tissue specificity Expressed in aerial organs, mostly in flowers, and in roots. Also observed at the branch points of pedicels of most young flowers, and in a patchy pattern in roots of mature plants and very young leaves in the rosette, including support cells of their trichomes.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
sequence-specific DNA binding  ? ECO  
DNA-binding transcription factor activity  ? ECO  
biological process
cutin biosynthetic process  ? ECO  
ethylene-activated signaling pathway  ? ECO  
wax metabolic process  ? ECO  
response to water deprivation  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets