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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G12650:CDS:1 | 105 | Chr1: 4306183-4306287 | Arabidopsis thaliana |
AT1G12650:CDS:2 | 128 | Chr1: 4306369-4306496 | Arabidopsis thaliana |
AT1G12650:CDS:3 | 67 | Chr1: 4306597-4306663 | Arabidopsis thaliana |
AT1G12650:CDS:4 | 53 | Chr1: 4306764-4306816 | Arabidopsis thaliana |
AT1G12650:CDS:5 | 55 | Chr1: 4306908-4306962 | Arabidopsis thaliana |
AT1G12650:CDS:6 | 75 | Chr1: 4307047-4307121 | Arabidopsis thaliana |
AT1G12650:CDS:7 | 121 | Chr1: 4307214-4307334 | Arabidopsis thaliana |
AT1G12650:CDS:8 | 47 | Chr1: 4307446-4307492 | Arabidopsis thaliana |
AT1G12650:CDS:9 | 96 | Chr1: 4307578-4307673 | Arabidopsis thaliana |
AT1G12650:CDS:1.1 | 105 | Chr1: 4306183-4306287 | Arabidopsis thaliana |
AT1G12650:CDS:2.1 | 128 | Chr1: 4306369-4306496 | Arabidopsis thaliana |
AT1G12650:CDS:3.1 | 67 | Chr1: 4306597-4306663 | Arabidopsis thaliana |
AT1G12650:CDS:4.1 | 53 | Chr1: 4306764-4306816 | Arabidopsis thaliana |
AT1G12650:CDS:5.1 | 55 | Chr1: 4306908-4306962 | Arabidopsis thaliana |
AT1G12650:CDS:6.1 | 75 | Chr1: 4307047-4307121 | Arabidopsis thaliana |
AT1G12650:CDS:7.1 | 121 | Chr1: 4307214-4307334 | Arabidopsis thaliana |
AT1G12650:CDS:8.1 | 47 | Chr1: 4307446-4307492 | Arabidopsis thaliana |
AT1G12650:CDS:9.1 | 96 | Chr1: 4307578-4307673 | Arabidopsis thaliana |
AT1G12650:CDS:1.2 | 105 | Chr1: 4306183-4306287 | Arabidopsis thaliana |
AT1G12650:CDS:2.2 | 128 | Chr1: 4306369-4306496 | Arabidopsis thaliana |
AT1G12650:CDS:3.2 | 67 | Chr1: 4306597-4306663 | Arabidopsis thaliana |
AT1G12650:CDS:4.2 | 53 | Chr1: 4306764-4306816 | Arabidopsis thaliana |
AT1G12650:CDS:5.2 | 55 | Chr1: 4306908-4306962 | Arabidopsis thaliana |
AT1G12650:CDS:6.2 | 75 | Chr1: 4307047-4307121 | Arabidopsis thaliana |
AT1G12650:CDS:7.2 | 121 | Chr1: 4307214-4307334 | Arabidopsis thaliana |
AT1G12650:CDS:8.2 | 47 | Chr1: 4307446-4307492 | Arabidopsis thaliana |
AT1G12650:CDS:9.2 | 96 | Chr1: 4307578-4307673 | Arabidopsis thaliana |
AT1G12650:CDS:1.3 | 105 | Chr1: 4306183-4306287 | Arabidopsis thaliana |
AT1G12650:CDS:2.3 | 128 | Chr1: 4306369-4306496 | Arabidopsis thaliana |
AT1G12650:CDS:3.3 | 67 | Chr1: 4306597-4306663 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G12640:exon:1 | 537 | Chr1: 4305371-4305907 | Arabidopsis thaliana |
AT1G12650:exon:1 | 238 | Chr1: 4305791-4306028 | Arabidopsis thaliana |
AT1G12650:exon:6 | 119 | Chr1: 4306169-4306287 | Arabidopsis thaliana |
AT1G12650:exon:16 | 430 | Chr1: 4307578-4308007 | Arabidopsis thaliana |
AT1G12650:exon:2 | 149 | Chr1: 4305880-4306028 | Arabidopsis thaliana |
AT1G12650:exon:3 | 55 | Chr1: 4305974-4306028 | Arabidopsis thaliana |
AT1G12650:exon:5 | 139 | Chr1: 4306149-4306287 | Arabidopsis thaliana |
AT1G12650:exon:14 | 200 | Chr1: 4307578-4307777 | Arabidopsis thaliana |
AT1G12650:exon:17 | 189 | Chr1: 4307817-4308005 | Arabidopsis thaliana |
AT1G12650:exon:4 | 229 | Chr1: 4306059-4306287 | Arabidopsis thaliana |
AT1G12650:exon:7 | 128 | Chr1: 4306369-4306496 | Arabidopsis thaliana |
AT1G12650:exon:8 | 67 | Chr1: 4306597-4306663 | Arabidopsis thaliana |
AT1G12650:exon:9 | 53 | Chr1: 4306764-4306816 | Arabidopsis thaliana |
AT1G12650:exon:10 | 55 | Chr1: 4306908-4306962 | Arabidopsis thaliana |
AT1G12650:exon:11 | 75 | Chr1: 4307047-4307121 | Arabidopsis thaliana |
AT1G12650:exon:12 | 121 | Chr1: 4307214-4307334 | Arabidopsis thaliana |
AT1G12650:exon:13 | 47 | Chr1: 4307446-4307492 | Arabidopsis thaliana |
AT1G12650:exon:15 | 428 | Chr1: 4307578-4308005 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G12640:five_prime_UTR:1 | 241 | Chr1: 4305667-4305907 | Arabidopsis thaliana |
AT1G12650:five_prime_UTR:1 | 238 | Chr1: 4305791-4306028 | Arabidopsis thaliana |
AT1G12650:five_prime_UTR:6 | 14 | Chr1: 4306169-4306182 | Arabidopsis thaliana |
AT1G12650:five_prime_UTR:2 | 149 | Chr1: 4305880-4306028 | Arabidopsis thaliana |
AT1G12650:five_prime_UTR:3 | 55 | Chr1: 4305974-4306028 | Arabidopsis thaliana |
AT1G12650:five_prime_UTR:5 | 34 | Chr1: 4306149-4306182 | Arabidopsis thaliana |
AT1G12650:five_prime_UTR:4 | 124 | Chr1: 4306059-4306182 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G12640 | locus:2195072 | LPLAT1 | lysophospholipid acyltransferase 1 | 2628 | Chr1: 4303280-4305907 | A. thaliana | MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11) | Encodes a lysophosphatidylcholine acyltransferase (LPCAT). Participates in the Lands cycle in developing seeds. | MBOAT (membrane bound O-acyl transferase) family protein | AtLPLAT1, LPCAT1, LPLAT1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G12640.1 | 1936 | Chr1: 4303280-4305907 |
AT1G12650.2 | 1333 | Chr1: 4305791-4308007 |
AT1G12650.3 | 1262 | Chr1: 4305880-4308005 |
AT1G12650.4 | 1129 | Chr1: 4305974-4308005 |
AT1G12650.1 | 1203 | Chr1: 4306059-4308005 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G12650:three_prime_UTR:3 | 334 | Chr1: 4307674-4308007 | Arabidopsis thaliana |
AT1G12650:three_prime_UTR:1 | 104 | Chr1: 4307674-4307777 | Arabidopsis thaliana |
AT1G12650:three_prime_UTR:4 | 189 | Chr1: 4307817-4308005 | Arabidopsis thaliana |
AT1G12650:three_prime_UTR:2 | 332 | Chr1: 4307674-4308005 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A178WN08_ARATH | function | Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway. |
A0A178WN08_ARATH | similarity | Belongs to the RRP36 family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleolus | ECO |
ribonucleoprotein complex | ECO |
molecular function | |
No terms in this category. | |
biological process | |
rRNA processing | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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