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Gene : PHR1 A. thaliana

DB identifier  ? AT1G12370 Secondary Identifier  ? locus:2034675
Name  ? photolyase 1 Brief Description  photolyase 1
TAIR Computational Description  photolyase 1;(source:Araport11)
TAIR Curator Summary  encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele
TAIR Short Description  photolyase 1
TAIR Aliases  PHR1, UVR2

3 Gene Rifs

1 Organism

18 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2640  
Location: Chr1:4206360-4208999 reverse strand

Gene models - PHR1 AT1G12370

? Gene models

Transcripts: 3  Exons: 27  Introns: 24 

Overlapping Features

? Genome features that overlap coordinates of this Gene

16 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PHR_ARATH-2 PHR_ARATH function Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutylpyrimidine dimers (CPDs), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation. Required for plant survival in the presence of UV-B light. Not involved in the repair of (6-4) photoproducts.
PHR_ARATH-2 PHR_ARATH similarity Belongs to the DNA photolyase class-2 family.
PHR_ARATH-2 PHR_ARATH tissue specificity Highly expressed in flowers. Expressed in roots and stems.

3 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
DNA photolyase activity  ? ECO  
deoxyribodipyrimidine photo-lyase activity  ? ECO  
DNA binding  ? ECO  
FAD binding  ? ECO  
biological process
UV protection  ? ECO  
photoreactive repair  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets