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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G10040:CDS:12 | 72 | Chr1: 3276108-3276179 | Arabidopsis thaliana |
AT1G10040:CDS:9 | 98 | Chr1: 3276262-3276359 | Arabidopsis thaliana |
AT1G10040:CDS:8 | 130 | Chr1: 3276437-3276566 | Arabidopsis thaliana |
AT1G10040:CDS:7 | 53 | Chr1: 3276657-3276709 | Arabidopsis thaliana |
AT1G10040:CDS:6 | 56 | Chr1: 3276852-3276907 | Arabidopsis thaliana |
AT1G10040:CDS:5 | 161 | Chr1: 3277001-3277161 | Arabidopsis thaliana |
AT1G10040:CDS:4 | 255 | Chr1: 3277332-3277586 | Arabidopsis thaliana |
AT1G10040:CDS:3 | 71 | Chr1: 3277765-3277835 | Arabidopsis thaliana |
AT1G10040:CDS:2 | 68 | Chr1: 3278045-3278112 | Arabidopsis thaliana |
AT1G10040:CDS:1 | 275 | Chr1: 3278190-3278464 | Arabidopsis thaliana |
AT1G10040:CDS:11 | 56 | Chr1: 3276124-3276179 | Arabidopsis thaliana |
AT1G10040:CDS:10 | 102 | Chr1: 3276258-3276359 | Arabidopsis thaliana |
AT1G10040:CDS:8.1 | 130 | Chr1: 3276437-3276566 | Arabidopsis thaliana |
AT1G10040:CDS:7.1 | 53 | Chr1: 3276657-3276709 | Arabidopsis thaliana |
AT1G10040:CDS:6.1 | 56 | Chr1: 3276852-3276907 | Arabidopsis thaliana |
AT1G10040:CDS:5.1 | 161 | Chr1: 3277001-3277161 | Arabidopsis thaliana |
AT1G10040:CDS:4.1 | 255 | Chr1: 3277332-3277586 | Arabidopsis thaliana |
AT1G10040:CDS:3.1 | 71 | Chr1: 3277765-3277835 | Arabidopsis thaliana |
AT1G10040:CDS:2.1 | 68 | Chr1: 3278045-3278112 | Arabidopsis thaliana |
AT1G10040:CDS:1.1 | 275 | Chr1: 3278190-3278464 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G10030:exon:3 | 390 | Chr1: 3275564-3275953 | Arabidopsis thaliana |
AT1G10040:exon:13 | 289 | Chr1: 3275891-3276179 | Arabidopsis thaliana |
AT1G10040:exon:10 | 98 | Chr1: 3276262-3276359 | Arabidopsis thaliana |
AT1G10040:exon:1 | 590 | Chr1: 3278190-3278779 | Arabidopsis thaliana |
AT1G10040:exon:12 | 261 | Chr1: 3275919-3276179 | Arabidopsis thaliana |
AT1G10040:exon:11 | 102 | Chr1: 3276258-3276359 | Arabidopsis thaliana |
AT1G10040:exon:9 | 130 | Chr1: 3276437-3276566 | Arabidopsis thaliana |
AT1G10040:exon:8 | 53 | Chr1: 3276657-3276709 | Arabidopsis thaliana |
AT1G10040:exon:7 | 56 | Chr1: 3276852-3276907 | Arabidopsis thaliana |
AT1G10040:exon:6 | 161 | Chr1: 3277001-3277161 | Arabidopsis thaliana |
AT1G10040:exon:5 | 255 | Chr1: 3277332-3277586 | Arabidopsis thaliana |
AT1G10040:exon:4 | 71 | Chr1: 3277765-3277835 | Arabidopsis thaliana |
AT1G10040:exon:3 | 68 | Chr1: 3278045-3278112 | Arabidopsis thaliana |
AT1G10040:exon:2 | 508 | Chr1: 3278190-3278697 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G10040:five_prime_UTR:1 | 315 | Chr1: 3278465-3278779 | Arabidopsis thaliana |
AT1G10040:five_prime_UTR:2 | 233 | Chr1: 3278465-3278697 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G10030 | locus:2201891 | ERG28 | homolog of yeast ergosterol28 | 2201 | Chr1: 3273753-3275953 | A. thaliana | ergosterol biosynthesis protein;(source:Araport11) | Encodes a protein that functions as a scaffolding platform for coassembling the sterol C4 demethylation enzyme complex. It also plays an essential role in the maintenance of polar auxin transport (PAT) by restricting the release and accumulation of 4-carboxy-4-methyl-24-methylenecycloartanol (CMMC), a PAT inhibitor. | homolog of yeast ergosterol28 | ERG28 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G10030.1 | 931 | Chr1: 3273753-3275953 |
AT1G10040.1 | 1771 | Chr1: 3275891-3278779 |
AT1G10040.2 | 1665 | Chr1: 3275919-3278697 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G10030:three_prime_UTR:1 | 322 | Chr1: 3275632-3275953 | Arabidopsis thaliana |
AT1G10040:three_prime_UTR:2 | 217 | Chr1: 3275891-3276107 | Arabidopsis thaliana |
AT1G10040:three_prime_UTR:1 | 205 | Chr1: 3275919-3276123 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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