External Links
- Aracyc
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- Plant Proteome Database
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- GeneVisible
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09890:CDS:17 | 142 | Chr1: 3214771-3214912 | Arabidopsis thaliana |
AT1G09890:CDS:14 | 371 | Chr1: 3215098-3215468 | Arabidopsis thaliana |
AT1G09890:CDS:12 | 91 | Chr1: 3215557-3215647 | Arabidopsis thaliana |
AT1G09890:CDS:11 | 107 | Chr1: 3215769-3215875 | Arabidopsis thaliana |
AT1G09890:CDS:10 | 159 | Chr1: 3215958-3216116 | Arabidopsis thaliana |
AT1G09890:CDS:9 | 174 | Chr1: 3216188-3216361 | Arabidopsis thaliana |
AT1G09890:CDS:8 | 142 | Chr1: 3216459-3216600 | Arabidopsis thaliana |
AT1G09890:CDS:6 | 120 | Chr1: 3216682-3216801 | Arabidopsis thaliana |
AT1G09890:CDS:5 | 120 | Chr1: 3216871-3216990 | Arabidopsis thaliana |
AT1G09890:CDS:4 | 51 | Chr1: 3217134-3217184 | Arabidopsis thaliana |
AT1G09890:CDS:2 | 122 | Chr1: 3217271-3217392 | Arabidopsis thaliana |
AT1G09890:CDS:1 | 42 | Chr1: 3217500-3217541 | Arabidopsis thaliana |
AT1G09890:CDS:19 | 231 | Chr1: 3214237-3214467 | Arabidopsis thaliana |
AT1G09890:CDS:18 | 127 | Chr1: 3214582-3214708 | Arabidopsis thaliana |
AT1G09890:CDS:16 | 117 | Chr1: 3214796-3214912 | Arabidopsis thaliana |
AT1G09890:CDS:15 | 157 | Chr1: 3215098-3215254 | Arabidopsis thaliana |
AT1G09890:CDS:13 | 142 | Chr1: 3215327-3215468 | Arabidopsis thaliana |
AT1G09890:CDS:12.1 | 91 | Chr1: 3215557-3215647 | Arabidopsis thaliana |
AT1G09890:CDS:11.1 | 107 | Chr1: 3215769-3215875 | Arabidopsis thaliana |
AT1G09890:CDS:10.1 | 159 | Chr1: 3215958-3216116 | Arabidopsis thaliana |
AT1G09890:CDS:9.1 | 174 | Chr1: 3216188-3216361 | Arabidopsis thaliana |
AT1G09890:CDS:8.1 | 142 | Chr1: 3216459-3216600 | Arabidopsis thaliana |
AT1G09890:CDS:6.1 | 120 | Chr1: 3216682-3216801 | Arabidopsis thaliana |
AT1G09890:CDS:5.1 | 120 | Chr1: 3216871-3216990 | Arabidopsis thaliana |
AT1G09890:CDS:4.1 | 51 | Chr1: 3217134-3217184 | Arabidopsis thaliana |
AT1G09890:CDS:2.1 | 122 | Chr1: 3217271-3217392 | Arabidopsis thaliana |
AT1G09890:CDS:1.1 | 42 | Chr1: 3217500-3217541 | Arabidopsis thaliana |
AT1G09890:CDS:19.1 | 231 | Chr1: 3214237-3214467 | Arabidopsis thaliana |
AT1G09890:CDS:18.1 | 127 | Chr1: 3214582-3214708 | Arabidopsis thaliana |
AT1G09890:CDS:16.1 | 117 | Chr1: 3214796-3214912 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09890:exon:18 | 331 | Chr1: 3214582-3214912 | Arabidopsis thaliana |
AT1G09890:exon:22 | 419 | Chr1: 3214049-3214467 | Arabidopsis thaliana |
AT1G09890:exon:15 | 371 | Chr1: 3215098-3215468 | Arabidopsis thaliana |
AT1G09890:exon:1 | 104 | Chr1: 3217500-3217603 | Arabidopsis thaliana |
AT1G09890:exon:21 | 405 | Chr1: 3214063-3214467 | Arabidopsis thaliana |
AT1G09890:exon:8 | 105 | Chr1: 3216682-3216786 | Arabidopsis thaliana |
AT1G09890:exon:2 | 71 | Chr1: 3217500-3217570 | Arabidopsis thaliana |
AT1G09890:exon:20 | 231 | Chr1: 3214237-3214467 | Arabidopsis thaliana |
AT1G09890:exon:19 | 127 | Chr1: 3214582-3214708 | Arabidopsis thaliana |
AT1G09890:exon:17 | 117 | Chr1: 3214796-3214912 | Arabidopsis thaliana |
AT1G09890:exon:16 | 157 | Chr1: 3215098-3215254 | Arabidopsis thaliana |
AT1G09890:exon:14 | 142 | Chr1: 3215327-3215468 | Arabidopsis thaliana |
AT1G09890:exon:13 | 91 | Chr1: 3215557-3215647 | Arabidopsis thaliana |
AT1G09890:exon:12 | 107 | Chr1: 3215769-3215875 | Arabidopsis thaliana |
AT1G09890:exon:11 | 159 | Chr1: 3215958-3216116 | Arabidopsis thaliana |
AT1G09890:exon:10 | 174 | Chr1: 3216188-3216361 | Arabidopsis thaliana |
AT1G09890:exon:9 | 142 | Chr1: 3216459-3216600 | Arabidopsis thaliana |
AT1G09890:exon:7 | 120 | Chr1: 3216682-3216801 | Arabidopsis thaliana |
AT1G09890:exon:6 | 120 | Chr1: 3216871-3216990 | Arabidopsis thaliana |
AT1G09890:exon:5 | 51 | Chr1: 3217134-3217184 | Arabidopsis thaliana |
AT1G09890:exon:4 | 122 | Chr1: 3217271-3217392 | Arabidopsis thaliana |
AT1G09890:exon:3 | 39 | Chr1: 3217500-3217538 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09890:five_prime_UTR:1 | 62 | Chr1: 3217542-3217603 | Arabidopsis thaliana |
AT1G09890:five_prime_UTR:2 | 29 | Chr1: 3217542-3217570 | Arabidopsis thaliana |
AT1G09890:five_prime_UTR:4 | 6 | Chr1: 3217387-3217392 | Arabidopsis thaliana |
AT1G09890:five_prime_UTR:3 | 39 | Chr1: 3217500-3217538 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G09890.2 | 2311 | Chr1: 3214049-3217603 |
AT1G09890.4 | 2152 | Chr1: 3214049-3217603 |
AT1G09890.3 | 2224 | Chr1: 3214049-3217603 |
AT1G09890.5 | 2090 | Chr1: 3214063-3217570 |
AT1G09890.1 | 1899 | Chr1: 3214237-3217538 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09890:three_prime_UTR:3 | 419 | Chr1: 3214049-3214467 | Arabidopsis thaliana |
AT1G09890:three_prime_UTR:1 | 189 | Chr1: 3214582-3214770 | Arabidopsis thaliana |
AT1G09890:three_prime_UTR:4 | 188 | Chr1: 3214049-3214236 | Arabidopsis thaliana |
AT1G09890:three_prime_UTR:2 | 174 | Chr1: 3214063-3214236 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4I2M6_ARATH A0A1P8AQ50_ARATH A0A1P8AQ61_ARATH A0A1P8AQ77_ARATH A0A1P8AQ71_ARATH | similarity | Belongs to the polysaccharide lyase 4 family. |
Function
Gene Ontology
cellular component | |
---|---|
extracellular region | ECO |
molecular function | |
rhamnogalacturonan endolyase activity | ECO |
carbohydrate binding | ECO |
biological process | |
carbohydrate metabolic process | ECO |
catabolic process | ECO |
cell wall organization | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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