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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09880:CDS:18 | 258 | Chr1: 3208828-3209085 | Arabidopsis thaliana |
AT1G09880:CDS:17 | 133 | Chr1: 3209168-3209300 | Arabidopsis thaliana |
AT1G09880:CDS:16 | 274 | Chr1: 3209377-3209650 | Arabidopsis thaliana |
AT1G09880:CDS:15 | 142 | Chr1: 3209731-3209872 | Arabidopsis thaliana |
AT1G09880:CDS:14 | 91 | Chr1: 3209964-3210054 | Arabidopsis thaliana |
AT1G09880:CDS:13 | 107 | Chr1: 3210143-3210249 | Arabidopsis thaliana |
AT1G09880:CDS:12 | 156 | Chr1: 3210331-3210486 | Arabidopsis thaliana |
AT1G09880:CDS:11 | 171 | Chr1: 3210569-3210739 | Arabidopsis thaliana |
AT1G09880:CDS:10 | 262 | Chr1: 3210848-3211109 | Arabidopsis thaliana |
AT1G09880:CDS:9 | 117 | Chr1: 3211184-3211300 | Arabidopsis thaliana |
AT1G09880:CDS:8 | 66 | Chr1: 3211385-3211450 | Arabidopsis thaliana |
AT1G09880:CDS:6 | 125 | Chr1: 3211535-3211659 | Arabidopsis thaliana |
AT1G09880:CDS:4 | 146 | Chr1: 3211834-3211979 | Arabidopsis thaliana |
AT1G09880:CDS:3 | 46 | Chr1: 3212118-3212163 | Arabidopsis thaliana |
AT1G09880:CDS:18.1 | 258 | Chr1: 3208828-3209085 | Arabidopsis thaliana |
AT1G09880:CDS:17.1 | 133 | Chr1: 3209168-3209300 | Arabidopsis thaliana |
AT1G09880:CDS:16.1 | 274 | Chr1: 3209377-3209650 | Arabidopsis thaliana |
AT1G09880:CDS:15.1 | 142 | Chr1: 3209731-3209872 | Arabidopsis thaliana |
AT1G09880:CDS:14.1 | 91 | Chr1: 3209964-3210054 | Arabidopsis thaliana |
AT1G09880:CDS:13.1 | 107 | Chr1: 3210143-3210249 | Arabidopsis thaliana |
AT1G09880:CDS:12.1 | 156 | Chr1: 3210331-3210486 | Arabidopsis thaliana |
AT1G09880:CDS:11.1 | 171 | Chr1: 3210569-3210739 | Arabidopsis thaliana |
AT1G09880:CDS:10.1 | 262 | Chr1: 3210848-3211109 | Arabidopsis thaliana |
AT1G09880:CDS:9.1 | 117 | Chr1: 3211184-3211300 | Arabidopsis thaliana |
AT1G09880:CDS:8.1 | 66 | Chr1: 3211385-3211450 | Arabidopsis thaliana |
AT1G09880:CDS:6.1 | 125 | Chr1: 3211535-3211659 | Arabidopsis thaliana |
AT1G09880:CDS:4.1 | 146 | Chr1: 3211834-3211979 | Arabidopsis thaliana |
AT1G09880:CDS:2 | 85 | Chr1: 3212118-3212202 | Arabidopsis thaliana |
AT1G09880:CDS:1 | 3 | Chr1: 3213415-3213417 | Arabidopsis thaliana |
AT1G09880:CDS:18.2 | 258 | Chr1: 3208828-3209085 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09870:exon:11 | 417 | Chr1: 3208298-3208714 | Arabidopsis thaliana |
AT1G09880:exon:21 | 374 | Chr1: 3208712-3209085 | Arabidopsis thaliana |
AT1G09880:exon:2 | 155 | Chr1: 3212118-3212272 | Arabidopsis thaliana |
AT1G09880:exon:20 | 297 | Chr1: 3208789-3209085 | Arabidopsis thaliana |
AT1G09880:exon:4 | 146 | Chr1: 3211834-3211979 | Arabidopsis thaliana |
AT1G09880:exon:3 | 85 | Chr1: 3212118-3212202 | Arabidopsis thaliana |
AT1G09880:exon:1 | 54 | Chr1: 3213415-3213468 | Arabidopsis thaliana |
AT1G09880:exon:19 | 287 | Chr1: 3208799-3209085 | Arabidopsis thaliana |
AT1G09880:exon:7 | 119 | Chr1: 3211535-3211653 | Arabidopsis thaliana |
AT1G09880:exon:18 | 258 | Chr1: 3208828-3209085 | Arabidopsis thaliana |
AT1G09880:exon:17 | 133 | Chr1: 3209168-3209300 | Arabidopsis thaliana |
AT1G09880:exon:16 | 274 | Chr1: 3209377-3209650 | Arabidopsis thaliana |
AT1G09880:exon:15 | 142 | Chr1: 3209731-3209872 | Arabidopsis thaliana |
AT1G09880:exon:14 | 91 | Chr1: 3209964-3210054 | Arabidopsis thaliana |
AT1G09880:exon:13 | 107 | Chr1: 3210143-3210249 | Arabidopsis thaliana |
AT1G09880:exon:12 | 156 | Chr1: 3210331-3210486 | Arabidopsis thaliana |
AT1G09880:exon:11 | 171 | Chr1: 3210569-3210739 | Arabidopsis thaliana |
AT1G09880:exon:10 | 262 | Chr1: 3210848-3211109 | Arabidopsis thaliana |
AT1G09880:exon:9 | 117 | Chr1: 3211184-3211300 | Arabidopsis thaliana |
AT1G09880:exon:8 | 66 | Chr1: 3211385-3211450 | Arabidopsis thaliana |
AT1G09880:exon:6 | 125 | Chr1: 3211535-3211659 | Arabidopsis thaliana |
AT1G09880:exon:5 | 109 | Chr1: 3211834-3211942 | Arabidopsis thaliana |
AT1G04747:exon:1 | 200 | Chr1: 3212812-3213011 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09880:five_prime_UTR:2 | 109 | Chr1: 3212164-3212272 | Arabidopsis thaliana |
AT1G09880:five_prime_UTR:1 | 51 | Chr1: 3213418-3213468 | Arabidopsis thaliana |
AT1G09880:five_prime_UTR:3 | 13 | Chr1: 3211930-3211942 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G09870 | locus:2024402 | AT1G09870 | 3136 | Chr1: 3205579-3208714 | A. thaliana | histidine acid phosphatase family protein;(source:Araport11) | NULL | histidine acid phosphatase family protein | ||
AT1G04747 | AT1G04747 | 200 | Chr1: 3212812-3213011 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G09870.1 | 1972 | Chr1: 3205579-3208714 |
AT1G09880.2 | 2319 | Chr1: 3208712-3212272 |
AT1G09880.3 | 2226 | Chr1: 3208789-3213468 |
AT1G09880.1 | 1925 | Chr1: 3208799-3211653 |
AT1G09880.4 | 2011 | Chr1: 3208828-3211942 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09870:three_prime_UTR:1 | 270 | Chr1: 3208445-3208714 | Arabidopsis thaliana |
AT1G09880:three_prime_UTR:3 | 116 | Chr1: 3208712-3208827 | Arabidopsis thaliana |
AT1G09880:three_prime_UTR:2 | 39 | Chr1: 3208789-3208827 | Arabidopsis thaliana |
AT1G09880:three_prime_UTR:1 | 29 | Chr1: 3208799-3208827 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8AV55_ARATH A0A1P8AV80_ARATH A0A1P8AV46_ARATH O04510_ARATH | similarity | Belongs to the polysaccharide lyase 4 family. |
Function
Gene Ontology
cellular component | |
---|---|
extracellular region | ECO |
molecular function | |
rhamnogalacturonan endolyase activity | ECO |
carbohydrate binding | ECO |
biological process | |
carbohydrate metabolic process | ECO |
catabolic process | ECO |
cell wall organization | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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