External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09470:CDS:7 | 168 | Chr1: 3055391-3055558 | Arabidopsis thaliana |
AT1G09470:CDS:6 | 102 | Chr1: 3055636-3055737 | Arabidopsis thaliana |
AT1G09470:CDS:4 | 462 | Chr1: 3055824-3056285 | Arabidopsis thaliana |
AT1G09470:CDS:2 | 108 | Chr1: 3056552-3056659 | Arabidopsis thaliana |
AT1G09470:CDS:1 | 171 | Chr1: 3056761-3056931 | Arabidopsis thaliana |
AT1G09470:CDS:7.1 | 168 | Chr1: 3055391-3055558 | Arabidopsis thaliana |
AT1G09470:CDS:5 | 127 | Chr1: 3055636-3055762 | Arabidopsis thaliana |
AT1G09470:CDS:3 | 434 | Chr1: 3055852-3056285 | Arabidopsis thaliana |
AT1G09470:CDS:2.1 | 108 | Chr1: 3056552-3056659 | Arabidopsis thaliana |
AT1G09470:CDS:1.1 | 171 | Chr1: 3056761-3056931 | Arabidopsis thaliana |
AT1G09470:CDS:7.2 | 168 | Chr1: 3055391-3055558 | Arabidopsis thaliana |
AT1G09470:CDS:5.1 | 127 | Chr1: 3055636-3055762 | Arabidopsis thaliana |
AT1G09470:CDS:3.1 | 434 | Chr1: 3055852-3056285 | Arabidopsis thaliana |
AT1G09470:CDS:2.2 | 108 | Chr1: 3056552-3056659 | Arabidopsis thaliana |
AT1G09470:CDS:1.2 | 171 | Chr1: 3056761-3056931 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09460:exon:3 | 481 | Chr1: 3054880-3055360 | Arabidopsis thaliana |
AT1G09470:exon:12 | 328 | Chr1: 3055231-3055558 | Arabidopsis thaliana |
AT1G09470:exon:9 | 102 | Chr1: 3055636-3055737 | Arabidopsis thaliana |
AT1G09470:exon:7 | 462 | Chr1: 3055824-3056285 | Arabidopsis thaliana |
AT1G09470:exon:4 | 237 | Chr1: 3056761-3056997 | Arabidopsis thaliana |
AT1G09470:exon:11 | 323 | Chr1: 3055236-3055558 | Arabidopsis thaliana |
AT1G09470:exon:1 | 215 | Chr1: 3057329-3057543 | Arabidopsis thaliana |
AT1G09470:exon:10 | 168 | Chr1: 3055391-3055558 | Arabidopsis thaliana |
AT1G09470:exon:8 | 127 | Chr1: 3055636-3055762 | Arabidopsis thaliana |
AT1G09470:exon:6 | 434 | Chr1: 3055852-3056285 | Arabidopsis thaliana |
AT1G09470:exon:5 | 108 | Chr1: 3056552-3056659 | Arabidopsis thaliana |
AT1G09470:exon:3 | 287 | Chr1: 3056761-3057047 | Arabidopsis thaliana |
AT1G09470:exon:2 | 241 | Chr1: 3057303-3057543 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09470:five_prime_UTR:4 | 66 | Chr1: 3056932-3056997 | Arabidopsis thaliana |
AT1G09470:five_prime_UTR:1 | 215 | Chr1: 3057329-3057543 | Arabidopsis thaliana |
AT1G09470:five_prime_UTR:3 | 116 | Chr1: 3056932-3057047 | Arabidopsis thaliana |
AT1G09470:five_prime_UTR:2 | 241 | Chr1: 3057303-3057543 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G09460 | locus:2012355 | AT1G09460 | 1663 | Chr1: 3053698-3055360 | A. thaliana | Carbohydrate-binding X8 domain superfamily protein;(source:Araport11) | NULL | Carbohydrate-binding X8 domain superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G09460.1 | 1466 | Chr1: 3053698-3055360 |
AT1G09470.1 | 1237 | Chr1: 3055231-3056997 |
AT1G09470.2 | 1494 | Chr1: 3055236-3057543 |
AT1G09470.3 | 1365 | Chr1: 3055391-3057543 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09460:three_prime_UTR:1 | 270 | Chr1: 3055091-3055360 | Arabidopsis thaliana |
AT1G09470:three_prime_UTR:2 | 160 | Chr1: 3055231-3055390 | Arabidopsis thaliana |
AT1G09470:three_prime_UTR:1 | 155 | Chr1: 3055236-3055390 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nuclear envelope | ECO |
nuclear inner membrane | ECO |
nucleoplasm | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...