Lists
This Gene is in one list:
External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08840:CDS:37 | 126 | Chr1: 2829579-2829704 | Arabidopsis thaliana |
AT1G08840:CDS:36 | 120 | Chr1: 2829791-2829910 | Arabidopsis thaliana |
AT1G08840:CDS:35 | 138 | Chr1: 2830004-2830141 | Arabidopsis thaliana |
AT1G08840:CDS:34 | 74 | Chr1: 2830205-2830278 | Arabidopsis thaliana |
AT1G08840:CDS:33 | 40 | Chr1: 2830373-2830412 | Arabidopsis thaliana |
AT1G08840:CDS:32 | 138 | Chr1: 2830769-2830906 | Arabidopsis thaliana |
AT1G08840:CDS:31 | 93 | Chr1: 2830996-2831088 | Arabidopsis thaliana |
AT1G08840:CDS:30 | 78 | Chr1: 2831168-2831245 | Arabidopsis thaliana |
AT1G08840:CDS:28 | 152 | Chr1: 2831469-2831620 | Arabidopsis thaliana |
AT1G08840:CDS:27 | 70 | Chr1: 2831695-2831764 | Arabidopsis thaliana |
AT1G08840:CDS:26 | 168 | Chr1: 2831980-2832147 | Arabidopsis thaliana |
AT1G08840:CDS:25 | 105 | Chr1: 2832273-2832377 | Arabidopsis thaliana |
AT1G08840:CDS:24 | 67 | Chr1: 2832495-2832561 | Arabidopsis thaliana |
AT1G08840:CDS:23 | 122 | Chr1: 2832650-2832771 | Arabidopsis thaliana |
AT1G08840:CDS:22 | 75 | Chr1: 2832901-2832975 | Arabidopsis thaliana |
AT1G08840:CDS:21 | 255 | Chr1: 2833145-2833399 | Arabidopsis thaliana |
AT1G08840:CDS:20 | 135 | Chr1: 2833492-2833626 | Arabidopsis thaliana |
AT1G08840:CDS:19 | 57 | Chr1: 2834017-2834073 | Arabidopsis thaliana |
AT1G08840:CDS:18 | 111 | Chr1: 2834151-2834261 | Arabidopsis thaliana |
AT1G08840:CDS:17 | 58 | Chr1: 2834339-2834396 | Arabidopsis thaliana |
AT1G08840:CDS:16 | 56 | Chr1: 2834489-2834544 | Arabidopsis thaliana |
AT1G08840:CDS:15 | 156 | Chr1: 2834639-2834794 | Arabidopsis thaliana |
AT1G08840:CDS:14 | 66 | Chr1: 2834927-2834992 | Arabidopsis thaliana |
AT1G08840:CDS:13 | 83 | Chr1: 2835372-2835454 | Arabidopsis thaliana |
AT1G08840:CDS:12 | 97 | Chr1: 2835739-2835835 | Arabidopsis thaliana |
AT1G08840:CDS:11 | 111 | Chr1: 2835948-2836058 | Arabidopsis thaliana |
AT1G08840:CDS:10 | 133 | Chr1: 2836158-2836290 | Arabidopsis thaliana |
AT1G08840:CDS:9 | 62 | Chr1: 2836596-2836657 | Arabidopsis thaliana |
AT1G08840:CDS:8 | 54 | Chr1: 2836723-2836776 | Arabidopsis thaliana |
AT1G08840:CDS:7 | 207 | Chr1: 2836861-2837067 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08830:exon:10 | 285 | Chr1: 2829031-2829315 | Arabidopsis thaliana |
AT1G08840:exon:44 | 41 | Chr1: 2829105-2829145 | Arabidopsis thaliana |
AT1G08840:exon:43 | 377 | Chr1: 2829328-2829704 | Arabidopsis thaliana |
AT1G08840:exon:9 | 222 | Chr1: 2837386-2837607 | Arabidopsis thaliana |
AT1G08840:exon:3 | 86 | Chr1: 2838766-2838851 | Arabidopsis thaliana |
AT1G08840:exon:8 | 168 | Chr1: 2837698-2837865 | Arabidopsis thaliana |
AT1G08840:exon:2 | 89 | Chr1: 2838766-2838854 | Arabidopsis thaliana |
AT1G08840:exon:42 | 126 | Chr1: 2829579-2829704 | Arabidopsis thaliana |
AT1G08840:exon:41 | 120 | Chr1: 2829791-2829910 | Arabidopsis thaliana |
AT1G08840:exon:40 | 138 | Chr1: 2830004-2830141 | Arabidopsis thaliana |
AT1G08840:exon:39 | 74 | Chr1: 2830205-2830278 | Arabidopsis thaliana |
AT1G08840:exon:38 | 40 | Chr1: 2830373-2830412 | Arabidopsis thaliana |
AT1G08840:exon:37 | 138 | Chr1: 2830769-2830906 | Arabidopsis thaliana |
AT1G08840:exon:36 | 93 | Chr1: 2830996-2831088 | Arabidopsis thaliana |
AT1G08840:exon:35 | 78 | Chr1: 2831168-2831245 | Arabidopsis thaliana |
AT1G08840:exon:33 | 152 | Chr1: 2831469-2831620 | Arabidopsis thaliana |
AT1G08840:exon:6 | 360 | Chr1: 2838034-2838393 | Arabidopsis thaliana |
AT1G08840:exon:4 | 148 | Chr1: 2838545-2838692 | Arabidopsis thaliana |
AT1G08840:exon:1 | 90 | Chr1: 2838766-2838855 | Arabidopsis thaliana |
AT1G08840:exon:34 | 202 | Chr1: 2831419-2831620 | Arabidopsis thaliana |
AT1G08840:exon:32 | 70 | Chr1: 2831695-2831764 | Arabidopsis thaliana |
AT1G08840:exon:31 | 168 | Chr1: 2831980-2832147 | Arabidopsis thaliana |
AT1G08840:exon:30 | 105 | Chr1: 2832273-2832377 | Arabidopsis thaliana |
AT1G08840:exon:29 | 67 | Chr1: 2832495-2832561 | Arabidopsis thaliana |
AT1G08840:exon:28 | 122 | Chr1: 2832650-2832771 | Arabidopsis thaliana |
AT1G08840:exon:27 | 75 | Chr1: 2832901-2832975 | Arabidopsis thaliana |
AT1G08840:exon:26 | 255 | Chr1: 2833145-2833399 | Arabidopsis thaliana |
AT1G08840:exon:25 | 135 | Chr1: 2833492-2833626 | Arabidopsis thaliana |
AT1G08840:exon:24 | 57 | Chr1: 2834017-2834073 | Arabidopsis thaliana |
AT1G08840:exon:23 | 111 | Chr1: 2834151-2834261 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08840:five_prime_UTR:3 | 86 | Chr1: 2838766-2838851 | Arabidopsis thaliana |
AT1G08840:five_prime_UTR:2 | 89 | Chr1: 2838766-2838854 | Arabidopsis thaliana |
AT1G08840:five_prime_UTR:6 | 24 | Chr1: 2838370-2838393 | Arabidopsis thaliana |
AT1G08840:five_prime_UTR:4 | 148 | Chr1: 2838545-2838692 | Arabidopsis thaliana |
AT1G08840:five_prime_UTR:1 | 90 | Chr1: 2838766-2838855 | Arabidopsis thaliana |
AT1G08840:five_prime_UTR:5 | 100 | Chr1: 2838370-2838469 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G08830 | locus:2025595 | CSD1 | copper/zinc superoxide dismutase 1 | 2256 | Chr1: 2827060-2829315 | A. thaliana | copper/zinc superoxide dismutase 1;(source:Araport11) | Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. Activation of CSD1 in the cytoplasm involves both a CCS-dependent and -independent pathway. | copper/zinc superoxide dismutase 1 | AtSOD1, CSD1, SOD1 |
AT1G08845 | locus:1005716736 | AT1G08845 | 2346 | Chr1: 2838789-2841134 | A. thaliana | Ribosomal L18p/L5e family protein;(source:Araport11) | Member of the uL18 RNA-binding protein family. uL18 proteins share a short structurally conserved domain that binds the 5S rRNA and allow its incorporation into ribosomes. | Ribosomal L18p/L5e family protein | HES, uL18-L5 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G08830.1 | 873 | Chr1: 2827060-2829315 |
AT1G08830.2 | 806 | Chr1: 2827118-2829315 |
AT1G08840.2 | 4340 | Chr1: 2829105-2838469 |
AT1G08840.3 | 4254 | Chr1: 2829579-2838851 |
AT1G08840.4 | 4248 | Chr1: 2829579-2838854 |
AT1G08840.1 | 4153 | Chr1: 2829579-2838855 |
AT1G08840.5 | 3291 | Chr1: 2831419-2838469 |
AT1G08845.2 | 705 | Chr1: 2838789-2840955 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08830:three_prime_UTR:1 | 262 | Chr1: 2829054-2829315 | Arabidopsis thaliana |
AT1G08840:three_prime_UTR:3 | 41 | Chr1: 2829105-2829145 | Arabidopsis thaliana |
AT1G08840:three_prime_UTR:2 | 251 | Chr1: 2829328-2829578 | Arabidopsis thaliana |
AT1G08840:three_prime_UTR:1 | 44 | Chr1: 2831419-2831462 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
JHS1_ARATH JHS1_ARATH-3 JHS1_ARATH-2 | function | Essential protein required during embryogenesis (PubMed:15266054). Key enzyme involved in DNA replication and damage repair, shoot apical meristem (SAM) maintenance, and development (PubMed:26951435). Involved in Okazaki fragments processing. Possesses different enzymatic activities, such as single-stranded DNA (ssDNA)-dependent ATPase, 5'-3' helicase and endonuclease activities. While the ATPase and endonuclease activities are well-defined and play a key role in Okazaki fragments processing and DSB repair, the 5'-3' DNA helicase activity is atypical: it cannot load onto its tracking strand internally and has an absolute free 5'-end requirement (By similarity). |
F4HXR5_ARATH A0A1P8ASU0_ARATH A0A5S9TCQ8_ARATH | function | Key enzyme involved in DNA replication and DNA repair. Involved in Okazaki fragments processing by cleaving long flaps that escape FEN1: flaps that are longer than 27 nucleotides are coated by replication protein A complex (RPA), leading to recruit DNA2 which cleaves the flap until it is too short to bind RPA and becomes a substrate for FEN1. Also involved in 5'-end resection of DNA during double-strand break (DSB) repair by mediating the cleavage of 5'-ssDNA. |
JHS1_ARATH F4HXR5_ARATH JHS1_ARATH-3 JHS1_ARATH-2 A0A1P8ASU0_ARATH A0A5S9TCQ8_ARATH | similarity | Belongs to the DNA2/NAM7 helicase family. |
JHS1_ARATH JHS1_ARATH-3 JHS1_ARATH-2 | subcellular location | Localized to nuclear foci in response to DNA damage. |
JHS1_ARATH JHS1_ARATH-3 JHS1_ARATH-2 | tissue specificity | Strongly expressed in meristems, including both root and shoot apical meristems (RAM and SAM) (PubMed:26951435). Also present in the vasculature and in young floral tissues (PubMed:26951435). |
Function
Gene Ontology
cellular component | |
---|---|
cytoplasm | ECO |
chromosome | ECO |
nucleus | ECO |
molecular function | |
5'-flap endonuclease activity | ECO |
4 iron, 4 sulfur cluster binding | ECO |
metal ion binding | ECO |
RNA binding | ECO |
DNA binding | ECO |
single-stranded DNA helicase activity | ECO |
ATP hydrolysis activity | ECO |
ATP binding | ECO |
biological process | |
DNA replication | ECO |
meristem maintenance | ECO |
replication fork reversal | ECO |
DNA damage response | ECO |
DNA repair | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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