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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08350:CDS:9 | 217 | Chr1: 2632970-2633186 | Arabidopsis thaliana |
AT1G08350:CDS:7 | 488 | Chr1: 2633412-2633899 | Arabidopsis thaliana |
AT1G08350:CDS:6 | 157 | Chr1: 2633995-2634151 | Arabidopsis thaliana |
AT1G08350:CDS:5 | 132 | Chr1: 2634288-2634419 | Arabidopsis thaliana |
AT1G08350:CDS:4 | 533 | Chr1: 2634523-2635055 | Arabidopsis thaliana |
AT1G08350:CDS:9.1 | 217 | Chr1: 2632970-2633186 | Arabidopsis thaliana |
AT1G08350:CDS:7.1 | 488 | Chr1: 2633412-2633899 | Arabidopsis thaliana |
AT1G08350:CDS:6.1 | 157 | Chr1: 2633995-2634151 | Arabidopsis thaliana |
AT1G08350:CDS:5.1 | 132 | Chr1: 2634288-2634419 | Arabidopsis thaliana |
AT1G08350:CDS:3 | 589 | Chr1: 2634523-2635111 | Arabidopsis thaliana |
AT1G08350:CDS:2 | 41 | Chr1: 2635209-2635249 | Arabidopsis thaliana |
AT1G08350:CDS:1 | 146 | Chr1: 2635460-2635605 | Arabidopsis thaliana |
AT1G08350:CDS:9.2 | 217 | Chr1: 2632970-2633186 | Arabidopsis thaliana |
AT1G08350:CDS:7.2 | 488 | Chr1: 2633412-2633899 | Arabidopsis thaliana |
AT1G08350:CDS:6.2 | 157 | Chr1: 2633995-2634151 | Arabidopsis thaliana |
AT1G08350:CDS:5.2 | 132 | Chr1: 2634288-2634419 | Arabidopsis thaliana |
AT1G08350:CDS:3.1 | 589 | Chr1: 2634523-2635111 | Arabidopsis thaliana |
AT1G08350:CDS:2.1 | 41 | Chr1: 2635209-2635249 | Arabidopsis thaliana |
AT1G08350:CDS:1.1 | 146 | Chr1: 2635460-2635605 | Arabidopsis thaliana |
AT1G08350:CDS:8 | 546 | Chr1: 2633354-2633899 | Arabidopsis thaliana |
AT1G08350:CDS:6.3 | 157 | Chr1: 2633995-2634151 | Arabidopsis thaliana |
AT1G08350:CDS:5.3 | 132 | Chr1: 2634288-2634419 | Arabidopsis thaliana |
AT1G08350:CDS:3.2 | 589 | Chr1: 2634523-2635111 | Arabidopsis thaliana |
AT1G08350:CDS:2.2 | 41 | Chr1: 2635209-2635249 | Arabidopsis thaliana |
AT1G08350:CDS:1.2 | 146 | Chr1: 2635460-2635605 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08340:exon:4 | 601 | Chr1: 2632271-2632871 | Arabidopsis thaliana |
AT1G08350:exon:6 | 414 | Chr1: 2635209-2635622 | Arabidopsis thaliana |
AT1G08350:exon:2 | 56 | Chr1: 2635787-2635842 | Arabidopsis thaliana |
AT1G08350:exon:14 | 377 | Chr1: 2632810-2633186 | Arabidopsis thaliana |
AT1G08350:exon:5 | 163 | Chr1: 2635460-2635622 | Arabidopsis thaliana |
AT1G08350:exon:1 | 66 | Chr1: 2635787-2635852 | Arabidopsis thaliana |
AT1G08350:exon:13 | 217 | Chr1: 2632970-2633186 | Arabidopsis thaliana |
AT1G08350:exon:11 | 488 | Chr1: 2633412-2633899 | Arabidopsis thaliana |
AT1G08350:exon:4 | 383 | Chr1: 2635460-2635842 | Arabidopsis thaliana |
AT1G08350:exon:12 | 546 | Chr1: 2633354-2633899 | Arabidopsis thaliana |
AT1G08350:exon:10 | 157 | Chr1: 2633995-2634151 | Arabidopsis thaliana |
AT1G08350:exon:9 | 132 | Chr1: 2634288-2634419 | Arabidopsis thaliana |
AT1G08350:exon:8 | 589 | Chr1: 2634523-2635111 | Arabidopsis thaliana |
AT1G08350:exon:7 | 41 | Chr1: 2635209-2635249 | Arabidopsis thaliana |
AT1G08350:exon:3 | 407 | Chr1: 2635460-2635866 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08350:five_prime_UTR:7 | 56 | Chr1: 2635056-2635111 | Arabidopsis thaliana |
AT1G08350:five_prime_UTR:6 | 414 | Chr1: 2635209-2635622 | Arabidopsis thaliana |
AT1G08350:five_prime_UTR:2 | 56 | Chr1: 2635787-2635842 | Arabidopsis thaliana |
AT1G08350:five_prime_UTR:5 | 17 | Chr1: 2635606-2635622 | Arabidopsis thaliana |
AT1G08350:five_prime_UTR:1 | 66 | Chr1: 2635787-2635852 | Arabidopsis thaliana |
AT1G08350:five_prime_UTR:4 | 237 | Chr1: 2635606-2635842 | Arabidopsis thaliana |
AT1G08350:five_prime_UTR:3 | 261 | Chr1: 2635606-2635866 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G08340 | locus:2199948 | AT1G08340 | 1981 | Chr1: 2630891-2632871 | A. thaliana | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein;(source:Araport11) | NULL | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G08340.1 | 1615 | Chr1: 2630891-2632871 |
AT1G08350.1 | 2213 | Chr1: 2632810-2635842 |
AT1G08350.2 | 2013 | Chr1: 2632810-2635852 |
AT1G08350.3 | 2007 | Chr1: 2632970-2635842 |
AT1G08350.4 | 1872 | Chr1: 2633354-2635866 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08340:three_prime_UTR:1 | 202 | Chr1: 2632670-2632871 | Arabidopsis thaliana |
AT1G08350:three_prime_UTR:1 | 160 | Chr1: 2632810-2632969 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
TMN5_ARATH-2 A0A1P8AW75_ARATH TMN5_ARATH | similarity | Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. |
TMN5_ARATH-2 TMN5_ARATH | tissue specificity | Expressed in the root cap and in giant cells. |
Function
Gene Ontology
cellular component | |
---|---|
endosome membrane | ECO |
Golgi membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
response to nematode | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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