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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08040:CDS:15 | 96 | Chr1: 2495507-2495602 | Arabidopsis thaliana |
AT1G08040:CDS:14 | 36 | Chr1: 2495694-2495729 | Arabidopsis thaliana |
AT1G08040:CDS:13 | 75 | Chr1: 2495821-2495895 | Arabidopsis thaliana |
AT1G08040:CDS:12 | 54 | Chr1: 2496007-2496060 | Arabidopsis thaliana |
AT1G08040:CDS:11 | 67 | Chr1: 2496230-2496296 | Arabidopsis thaliana |
AT1G08040:CDS:10 | 57 | Chr1: 2496399-2496455 | Arabidopsis thaliana |
AT1G08040:CDS:9 | 114 | Chr1: 2496539-2496652 | Arabidopsis thaliana |
AT1G08040:CDS:8 | 102 | Chr1: 2496724-2496825 | Arabidopsis thaliana |
AT1G08040:CDS:7 | 116 | Chr1: 2496930-2497045 | Arabidopsis thaliana |
AT1G08040:CDS:6 | 84 | Chr1: 2497132-2497215 | Arabidopsis thaliana |
AT1G08040:CDS:5 | 105 | Chr1: 2497329-2497433 | Arabidopsis thaliana |
AT1G08040:CDS:4 | 111 | Chr1: 2497562-2497672 | Arabidopsis thaliana |
AT1G08040:CDS:2 | 112 | Chr1: 2497754-2497865 | Arabidopsis thaliana |
AT1G08040:CDS:1 | 20 | Chr1: 2497954-2497973 | Arabidopsis thaliana |
AT1G08040:CDS:15.1 | 96 | Chr1: 2495507-2495602 | Arabidopsis thaliana |
AT1G08040:CDS:14.1 | 36 | Chr1: 2495694-2495729 | Arabidopsis thaliana |
AT1G08040:CDS:13.1 | 75 | Chr1: 2495821-2495895 | Arabidopsis thaliana |
AT1G08040:CDS:12.1 | 54 | Chr1: 2496007-2496060 | Arabidopsis thaliana |
AT1G08040:CDS:11.1 | 67 | Chr1: 2496230-2496296 | Arabidopsis thaliana |
AT1G08040:CDS:10.1 | 57 | Chr1: 2496399-2496455 | Arabidopsis thaliana |
AT1G08040:CDS:9.1 | 114 | Chr1: 2496539-2496652 | Arabidopsis thaliana |
AT1G08040:CDS:8.1 | 102 | Chr1: 2496724-2496825 | Arabidopsis thaliana |
AT1G08040:CDS:7.1 | 116 | Chr1: 2496930-2497045 | Arabidopsis thaliana |
AT1G08040:CDS:6.1 | 84 | Chr1: 2497132-2497215 | Arabidopsis thaliana |
AT1G08040:CDS:5.1 | 105 | Chr1: 2497329-2497433 | Arabidopsis thaliana |
AT1G08040:CDS:4.1 | 111 | Chr1: 2497562-2497672 | Arabidopsis thaliana |
AT1G08040:CDS:3 | 100 | Chr1: 2497754-2497853 | Arabidopsis thaliana |
AT1G08040:CDS:1.1 | 20 | Chr1: 2497954-2497973 | Arabidopsis thaliana |
AT1G08040:CDS:15.2 | 96 | Chr1: 2495507-2495602 | Arabidopsis thaliana |
AT1G08040:CDS:14.2 | 36 | Chr1: 2495694-2495729 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08035:exon:6 | 519 | Chr1: 2494795-2495313 | Arabidopsis thaliana |
AT1G08040:exon:21 | 294 | Chr1: 2495309-2495602 | Arabidopsis thaliana |
AT1G08040:exon:20 | 284 | Chr1: 2495319-2495602 | Arabidopsis thaliana |
AT1G08040:exon:7 | 100 | Chr1: 2497754-2497853 | Arabidopsis thaliana |
AT1G08040:exon:1 | 281 | Chr1: 2498484-2498764 | Arabidopsis thaliana |
AT1G08040:exon:5 | 45 | Chr1: 2497954-2497998 | Arabidopsis thaliana |
AT1G08040:exon:3 | 162 | Chr1: 2498480-2498641 | Arabidopsis thaliana |
AT1G08040:exon:19 | 261 | Chr1: 2495342-2495602 | Arabidopsis thaliana |
AT1G08040:exon:18 | 36 | Chr1: 2495694-2495729 | Arabidopsis thaliana |
AT1G08040:exon:17 | 75 | Chr1: 2495821-2495895 | Arabidopsis thaliana |
AT1G08040:exon:16 | 54 | Chr1: 2496007-2496060 | Arabidopsis thaliana |
AT1G08040:exon:15 | 67 | Chr1: 2496230-2496296 | Arabidopsis thaliana |
AT1G08040:exon:14 | 57 | Chr1: 2496399-2496455 | Arabidopsis thaliana |
AT1G08040:exon:13 | 114 | Chr1: 2496539-2496652 | Arabidopsis thaliana |
AT1G08040:exon:12 | 102 | Chr1: 2496724-2496825 | Arabidopsis thaliana |
AT1G08040:exon:11 | 116 | Chr1: 2496930-2497045 | Arabidopsis thaliana |
AT1G08040:exon:10 | 84 | Chr1: 2497132-2497215 | Arabidopsis thaliana |
AT1G08040:exon:9 | 105 | Chr1: 2497329-2497433 | Arabidopsis thaliana |
AT1G08040:exon:8 | 111 | Chr1: 2497562-2497672 | Arabidopsis thaliana |
AT1G08040:exon:6 | 112 | Chr1: 2497754-2497865 | Arabidopsis thaliana |
AT1G08040:exon:4 | 64 | Chr1: 2497954-2498017 | Arabidopsis thaliana |
AT1G08040:exon:2 | 285 | Chr1: 2498480-2498764 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08040:five_prime_UTR:1 | 281 | Chr1: 2498484-2498764 | Arabidopsis thaliana |
AT1G08040:five_prime_UTR:5 | 25 | Chr1: 2497974-2497998 | Arabidopsis thaliana |
AT1G08040:five_prime_UTR:3 | 162 | Chr1: 2498480-2498641 | Arabidopsis thaliana |
AT1G08040:five_prime_UTR:4 | 44 | Chr1: 2497974-2498017 | Arabidopsis thaliana |
AT1G08040:five_prime_UTR:2 | 285 | Chr1: 2498480-2498764 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G08035 | locus:504956111 | AT1G08035 | 912 | Chr1: 2494402-2495313 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G08035.3 | 714 | Chr1: 2494503-2495313 |
AT1G08040.1 | 1653 | Chr1: 2495309-2498764 |
AT1G08040.3 | 1631 | Chr1: 2495319-2498764 |
AT1G08040.2 | 1501 | Chr1: 2495342-2498641 |
AT1G08040.4 | 1643 | Chr1: 2495342-2498764 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08035:three_prime_UTR:3 | 164 | Chr1: 2495150-2495313 | Arabidopsis thaliana |
AT1G08040:three_prime_UTR:3 | 198 | Chr1: 2495309-2495506 | Arabidopsis thaliana |
AT1G08040:three_prime_UTR:2 | 188 | Chr1: 2495319-2495506 | Arabidopsis thaliana |
AT1G08040:three_prime_UTR:1 | 165 | Chr1: 2495342-2495506 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
trans-Golgi network | ECO |
Golgi trans cisterna | ECO |
Golgi apparatus | ECO |
endosome | ECO |
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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