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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 28, Exons: 17, Five Prime UTRs: 3, Genes: 2, mRNAs: 4, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G07010:CDS:1 | 184 | Chr1: 2152949-2153132 | Arabidopsis thaliana |
AT1G07010:CDS:3 | 101 | Chr1: 2153223-2153323 | Arabidopsis thaliana |
AT1G07010:CDS:5 | 114 | Chr1: 2153492-2153605 | Arabidopsis thaliana |
AT1G07010:CDS:7 | 213 | Chr1: 2153750-2153962 | Arabidopsis thaliana |
AT1G07010:CDS:8 | 136 | Chr1: 2154052-2154187 | Arabidopsis thaliana |
AT1G07010:CDS:9 | 176 | Chr1: 2154274-2154449 | Arabidopsis thaliana |
AT1G07010:CDS:10 | 89 | Chr1: 2154547-2154635 | Arabidopsis thaliana |
AT1G07010:CDS:11 | 70 | Chr1: 2154719-2154788 | Arabidopsis thaliana |
AT1G07010:CDS:12 | 87 | Chr1: 2154882-2154968 | Arabidopsis thaliana |
AT1G07010:CDS:1.1 | 184 | Chr1: 2152949-2153132 | Arabidopsis thaliana |
AT1G07010:CDS:3.1 | 101 | Chr1: 2153223-2153323 | Arabidopsis thaliana |
AT1G07010:CDS:6 | 102 | Chr1: 2153504-2153605 | Arabidopsis thaliana |
AT1G07010:CDS:7.1 | 213 | Chr1: 2153750-2153962 | Arabidopsis thaliana |
AT1G07010:CDS:8.1 | 136 | Chr1: 2154052-2154187 | Arabidopsis thaliana |
AT1G07010:CDS:9.1 | 176 | Chr1: 2154274-2154449 | Arabidopsis thaliana |
AT1G07010:CDS:10.1 | 89 | Chr1: 2154547-2154635 | Arabidopsis thaliana |
AT1G07010:CDS:11.1 | 70 | Chr1: 2154719-2154788 | Arabidopsis thaliana |
AT1G07010:CDS:12.1 | 87 | Chr1: 2154882-2154968 | Arabidopsis thaliana |
AT1G07010:CDS:1.2 | 184 | Chr1: 2152949-2153132 | Arabidopsis thaliana |
AT1G07010:CDS:2 | 113 | Chr1: 2153196-2153308 | Arabidopsis thaliana |
AT1G07010:CDS:4 | 33 | Chr1: 2153391-2153423 | Arabidopsis thaliana |
AT1G07010:CDS:6.1 | 102 | Chr1: 2153504-2153605 | Arabidopsis thaliana |
AT1G07010:CDS:7.2 | 213 | Chr1: 2153750-2153962 | Arabidopsis thaliana |
AT1G07010:CDS:8.2 | 136 | Chr1: 2154052-2154187 | Arabidopsis thaliana |
AT1G07010:CDS:9.2 | 176 | Chr1: 2154274-2154449 | Arabidopsis thaliana |
AT1G07010:CDS:10.2 | 89 | Chr1: 2154547-2154635 | Arabidopsis thaliana |
AT1G07010:CDS:11.2 | 70 | Chr1: 2154719-2154788 | Arabidopsis thaliana |
AT1G07010:CDS:12.2 | 87 | Chr1: 2154882-2154968 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G07010:exon:1 | 335 | Chr1: 2152798-2153132 | Arabidopsis thaliana |
AT1G07010:exon:7 | 114 | Chr1: 2153492-2153605 | Arabidopsis thaliana |
AT1G07010:exon:2 | 281 | Chr1: 2152852-2153132 | Arabidopsis thaliana |
AT1G07010:exon:5 | 101 | Chr1: 2153223-2153323 | Arabidopsis thaliana |
AT1G07010:exon:15 | 388 | Chr1: 2154882-2155269 | Arabidopsis thaliana |
AT1G07010:exon:3 | 253 | Chr1: 2152880-2153132 | Arabidopsis thaliana |
AT1G07010:exon:4 | 113 | Chr1: 2153196-2153308 | Arabidopsis thaliana |
AT1G07010:exon:6 | 33 | Chr1: 2153391-2153423 | Arabidopsis thaliana |
AT1G07010:exon:8 | 102 | Chr1: 2153504-2153605 | Arabidopsis thaliana |
AT1G07010:exon:9 | 213 | Chr1: 2153750-2153962 | Arabidopsis thaliana |
AT1G07010:exon:10 | 136 | Chr1: 2154052-2154187 | Arabidopsis thaliana |
AT1G07010:exon:11 | 176 | Chr1: 2154274-2154449 | Arabidopsis thaliana |
AT1G07010:exon:12 | 89 | Chr1: 2154547-2154635 | Arabidopsis thaliana |
AT1G07010:exon:13 | 70 | Chr1: 2154719-2154788 | Arabidopsis thaliana |
AT1G07010:exon:14 | 357 | Chr1: 2154882-2155238 | Arabidopsis thaliana |
AT1G04537:exon:1 | 410 | Chr1: 2155213-2155622 | Arabidopsis thaliana |
AT1G07020:exon:2 | 543 | Chr1: 2155213-2155755 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G07010:five_prime_UTR:1 | 151 | Chr1: 2152798-2152948 | Arabidopsis thaliana |
AT1G07010:five_prime_UTR:2 | 97 | Chr1: 2152852-2152948 | Arabidopsis thaliana |
AT1G07010:five_prime_UTR:3 | 69 | Chr1: 2152880-2152948 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G04537 | AT1G04537 | 410 | Chr1: 2155213-2155622 | A. thaliana | Natural antisense transcript overlaps with AT1G07020;(source:Araport11) | NULL | ||||
AT1G07020 | locus:2007457 | AT1G07020 | 941 | Chr1: 2155213-2156153 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G07010.1 | 1622 | Chr1: 2152798-2155269 |
AT1G07010.2 | 1556 | Chr1: 2152852-2155269 |
AT1G07010.3 | 1542 | Chr1: 2152880-2155238 |
AT1G07020.1 | 819 | Chr1: 2155213-2156153 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G07010:three_prime_UTR:2 | 301 | Chr1: 2154969-2155269 | Arabidopsis thaliana |
AT1G07010:three_prime_UTR:1 | 270 | Chr1: 2154969-2155238 | Arabidopsis thaliana |
AT1G07020:three_prime_UTR:1 | 106 | Chr1: 2155213-2155318 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SLP1_ARATH | function | Shows phosphatase activity, hydrolyzing the artificial substrate para-nitrophenylphosphate (pNPP) in vitro. |
SLP1_ARATH | similarity | Belongs to the metallophosphoesterase superfamily. SLP family. |
SLP1_ARATH | tissue specificity | Expressed in rosettes leaves, shoots and flowers (at protein level). |
Function
Gene Ontology
cellular component | |
---|---|
chloroplast | ECO |
molecular function | |
manganese ion binding | ECO |
phosphoprotein phosphatase activity | ECO |
phosphatase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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