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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 28, Exons: 16, Five Prime UTRs: 4, Genes: 2, mRNAs: 5, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G06740:CDS:1 | 2181 | Chr1: 2071194-2073374 | Arabidopsis thaliana |
AT1G06750:CDS:1 | 10 | Chr1: 2073882-2073891 | Arabidopsis thaliana |
AT1G06750:CDS:3 | 186 | Chr1: 2073968-2074153 | Arabidopsis thaliana |
AT1G06750:CDS:4 | 224 | Chr1: 2074247-2074470 | Arabidopsis thaliana |
AT1G06750:CDS:5 | 62 | Chr1: 2074555-2074616 | Arabidopsis thaliana |
AT1G06750:CDS:6 | 222 | Chr1: 2074722-2074943 | Arabidopsis thaliana |
AT1G06750:CDS:7 | 121 | Chr1: 2075058-2075178 | Arabidopsis thaliana |
AT1G06750:CDS:8 | 323 | Chr1: 2075268-2075590 | Arabidopsis thaliana |
AT1G06750:CDS:9 | 145 | Chr1: 2075680-2075824 | Arabidopsis thaliana |
AT1G06750:CDS:10 | 267 | Chr1: 2076084-2076350 | Arabidopsis thaliana |
AT1G06750:CDS:2 | 31 | Chr1: 2073882-2073912 | Arabidopsis thaliana |
AT1G06750:CDS:3.1 | 186 | Chr1: 2073968-2074153 | Arabidopsis thaliana |
AT1G06750:CDS:4.1 | 224 | Chr1: 2074247-2074470 | Arabidopsis thaliana |
AT1G06750:CDS:5.1 | 62 | Chr1: 2074555-2074616 | Arabidopsis thaliana |
AT1G06750:CDS:6.1 | 222 | Chr1: 2074722-2074943 | Arabidopsis thaliana |
AT1G06750:CDS:7.1 | 121 | Chr1: 2075058-2075178 | Arabidopsis thaliana |
AT1G06750:CDS:8.1 | 323 | Chr1: 2075268-2075590 | Arabidopsis thaliana |
AT1G06750:CDS:9.1 | 145 | Chr1: 2075680-2075824 | Arabidopsis thaliana |
AT1G06750:CDS:10.1 | 267 | Chr1: 2076084-2076350 | Arabidopsis thaliana |
AT1G06750:CDS:1.1 | 10 | Chr1: 2073882-2073891 | Arabidopsis thaliana |
AT1G06750:CDS:3.2 | 186 | Chr1: 2073968-2074153 | Arabidopsis thaliana |
AT1G06750:CDS:4.2 | 224 | Chr1: 2074247-2074470 | Arabidopsis thaliana |
AT1G06750:CDS:5.2 | 62 | Chr1: 2074555-2074616 | Arabidopsis thaliana |
AT1G06750:CDS:6.2 | 222 | Chr1: 2074722-2074943 | Arabidopsis thaliana |
AT1G06750:CDS:7.2 | 121 | Chr1: 2075058-2075178 | Arabidopsis thaliana |
AT1G06750:CDS:8.2 | 323 | Chr1: 2075268-2075590 | Arabidopsis thaliana |
AT1G06750:CDS:9.2 | 145 | Chr1: 2075680-2075824 | Arabidopsis thaliana |
AT1G06750:CDS:10.2 | 267 | Chr1: 2076084-2076350 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G06740:exon:2 | 2273 | Chr1: 2071102-2073374 | Arabidopsis thaliana |
AT1G06750:exon:1 | 392 | Chr1: 2072979-2073370 | Arabidopsis thaliana |
AT1G06750:exon:4 | 119 | Chr1: 2073773-2073891 | Arabidopsis thaliana |
AT1G06750:exon:13 | 385 | Chr1: 2076084-2076468 | Arabidopsis thaliana |
AT1G06750:exon:2 | 212 | Chr1: 2073701-2073912 | Arabidopsis thaliana |
AT1G06750:exon:14 | 422 | Chr1: 2076084-2076505 | Arabidopsis thaliana |
AT1G06750:exon:3 | 188 | Chr1: 2073704-2073891 | Arabidopsis thaliana |
AT1G06750:exon:5 | 186 | Chr1: 2073968-2074153 | Arabidopsis thaliana |
AT1G06750:exon:6 | 224 | Chr1: 2074247-2074470 | Arabidopsis thaliana |
AT1G06750:exon:7 | 62 | Chr1: 2074555-2074616 | Arabidopsis thaliana |
AT1G06750:exon:8 | 222 | Chr1: 2074722-2074943 | Arabidopsis thaliana |
AT1G06750:exon:9 | 121 | Chr1: 2075058-2075178 | Arabidopsis thaliana |
AT1G06750:exon:10 | 323 | Chr1: 2075268-2075590 | Arabidopsis thaliana |
AT1G06750:exon:11 | 145 | Chr1: 2075680-2075824 | Arabidopsis thaliana |
AT1G06750:exon:12 | 267 | Chr1: 2076084-2076350 | Arabidopsis thaliana |
AT1G06760:exon:2 | 807 | Chr1: 2076504-2077310 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G06750:five_prime_UTR:1 | 392 | Chr1: 2072979-2073370 | Arabidopsis thaliana |
AT1G06750:five_prime_UTR:4 | 109 | Chr1: 2073773-2073881 | Arabidopsis thaliana |
AT1G06750:five_prime_UTR:2 | 181 | Chr1: 2073701-2073881 | Arabidopsis thaliana |
AT1G06750:five_prime_UTR:3 | 178 | Chr1: 2073704-2073881 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G06740 | locus:2033133 | MUG3 | MUSTANG 3 | 2638 | Chr1: 2070737-2073374 | A. thaliana | MuDR family transposase;(source:Araport11) | Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8). | NULL | MUG3 |
AT1G06760 | locus:2033118 | AT1G06760 | 1264 | Chr1: 2076504-2077767 | A. thaliana | winged-helix DNA-binding transcription factor family protein;(source:Araport11) | NULL | winged-helix DNA-binding transcription factor family protein | H1.1, HON1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G06740.1 | 2430 | Chr1: 2070737-2073374 |
AT1G06750.1 | 2179 | Chr1: 2072979-2076468 |
AT1G06750.2 | 1917 | Chr1: 2073701-2076505 |
AT1G06750.3 | 1738 | Chr1: 2073704-2076350 |
AT1G06760.1 | 1159 | Chr1: 2076504-2077767 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G06750:three_prime_UTR:1 | 118 | Chr1: 2076351-2076468 | Arabidopsis thaliana |
AT1G06750:three_prime_UTR:2 | 155 | Chr1: 2076351-2076505 | Arabidopsis thaliana |
AT1G06760:three_prime_UTR:1 | 183 | Chr1: 2076504-2076686 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE06780 | 2799 | Chr1: 2070737-2073535 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE06780:transposon_fragment:1 | 2799 | Chr1: 2070737-2073535 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
ATP binding | ECO |
kinase activity | ECO |
hydrolase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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