External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05960:CDS:20 | 159 | Chr1: 1808478-1808636 | Arabidopsis thaliana |
AT1G05960:CDS:19 | 201 | Chr1: 1808736-1808936 | Arabidopsis thaliana |
AT1G05960:CDS:18 | 135 | Chr1: 1809019-1809153 | Arabidopsis thaliana |
AT1G05960:CDS:17 | 141 | Chr1: 1809222-1809362 | Arabidopsis thaliana |
AT1G05960:CDS:16 | 195 | Chr1: 1809506-1809700 | Arabidopsis thaliana |
AT1G05960:CDS:15 | 128 | Chr1: 1809813-1809940 | Arabidopsis thaliana |
AT1G05960:CDS:14 | 76 | Chr1: 1810506-1810581 | Arabidopsis thaliana |
AT1G05960:CDS:13 | 150 | Chr1: 1810872-1811021 | Arabidopsis thaliana |
AT1G05960:CDS:12 | 354 | Chr1: 1811163-1811516 | Arabidopsis thaliana |
AT1G05960:CDS:11 | 150 | Chr1: 1811608-1811757 | Arabidopsis thaliana |
AT1G05960:CDS:10 | 290 | Chr1: 1812450-1812739 | Arabidopsis thaliana |
AT1G05960:CDS:9 | 197 | Chr1: 1812833-1813029 | Arabidopsis thaliana |
AT1G05960:CDS:8 | 155 | Chr1: 1813134-1813288 | Arabidopsis thaliana |
AT1G05960:CDS:7 | 48 | Chr1: 1813386-1813433 | Arabidopsis thaliana |
AT1G05960:CDS:6 | 129 | Chr1: 1813927-1814055 | Arabidopsis thaliana |
AT1G05960:CDS:5 | 115 | Chr1: 1814144-1814258 | Arabidopsis thaliana |
AT1G05960:CDS:3 | 116 | Chr1: 1814447-1814562 | Arabidopsis thaliana |
AT1G05960:CDS:2 | 75 | Chr1: 1814659-1814733 | Arabidopsis thaliana |
AT1G05960:CDS:1 | 135 | Chr1: 1814926-1815060 | Arabidopsis thaliana |
AT1G05960:CDS:20.1 | 159 | Chr1: 1808478-1808636 | Arabidopsis thaliana |
AT1G05960:CDS:19.1 | 201 | Chr1: 1808736-1808936 | Arabidopsis thaliana |
AT1G05960:CDS:18.1 | 135 | Chr1: 1809019-1809153 | Arabidopsis thaliana |
AT1G05960:CDS:17.1 | 141 | Chr1: 1809222-1809362 | Arabidopsis thaliana |
AT1G05960:CDS:16.1 | 195 | Chr1: 1809506-1809700 | Arabidopsis thaliana |
AT1G05960:CDS:15.1 | 128 | Chr1: 1809813-1809940 | Arabidopsis thaliana |
AT1G05960:CDS:14.1 | 76 | Chr1: 1810506-1810581 | Arabidopsis thaliana |
AT1G05960:CDS:13.1 | 150 | Chr1: 1810872-1811021 | Arabidopsis thaliana |
AT1G05960:CDS:12.1 | 354 | Chr1: 1811163-1811516 | Arabidopsis thaliana |
AT1G05960:CDS:11.1 | 150 | Chr1: 1811608-1811757 | Arabidopsis thaliana |
AT1G05960:CDS:10.1 | 290 | Chr1: 1812450-1812739 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05960:exon:27 | 677 | Chr1: 1807960-1808636 | Arabidopsis thaliana |
AT1G05960:exon:1 | 177 | Chr1: 1815392-1815568 | Arabidopsis thaliana |
AT1G05960:exon:3 | 26 | Chr1: 1815326-1815351 | Arabidopsis thaliana |
AT1G05960:exon:26 | 673 | Chr1: 1807964-1808636 | Arabidopsis thaliana |
AT1G05960:exon:4 | 178 | Chr1: 1815174-1815351 | Arabidopsis thaliana |
AT1G05960:exon:25 | 664 | Chr1: 1807973-1808636 | Arabidopsis thaliana |
AT1G05960:exon:24 | 201 | Chr1: 1808736-1808936 | Arabidopsis thaliana |
AT1G05960:exon:23 | 135 | Chr1: 1809019-1809153 | Arabidopsis thaliana |
AT1G05960:exon:22 | 141 | Chr1: 1809222-1809362 | Arabidopsis thaliana |
AT1G05960:exon:21 | 195 | Chr1: 1809506-1809700 | Arabidopsis thaliana |
AT1G05960:exon:20 | 128 | Chr1: 1809813-1809940 | Arabidopsis thaliana |
AT1G05960:exon:19 | 76 | Chr1: 1810506-1810581 | Arabidopsis thaliana |
AT1G05960:exon:18 | 150 | Chr1: 1810872-1811021 | Arabidopsis thaliana |
AT1G05960:exon:17 | 354 | Chr1: 1811163-1811516 | Arabidopsis thaliana |
AT1G05960:exon:16 | 150 | Chr1: 1811608-1811757 | Arabidopsis thaliana |
AT1G05960:exon:15 | 290 | Chr1: 1812450-1812739 | Arabidopsis thaliana |
AT1G05960:exon:14 | 197 | Chr1: 1812833-1813029 | Arabidopsis thaliana |
AT1G05960:exon:13 | 155 | Chr1: 1813134-1813288 | Arabidopsis thaliana |
AT1G05960:exon:12 | 48 | Chr1: 1813386-1813433 | Arabidopsis thaliana |
AT1G05960:exon:11 | 129 | Chr1: 1813927-1814055 | Arabidopsis thaliana |
AT1G05960:exon:10 | 115 | Chr1: 1814144-1814258 | Arabidopsis thaliana |
AT1G05960:exon:9 | 63 | Chr1: 1814328-1814390 | Arabidopsis thaliana |
AT1G05960:exon:8 | 116 | Chr1: 1814447-1814562 | Arabidopsis thaliana |
AT1G05960:exon:7 | 75 | Chr1: 1814659-1814733 | Arabidopsis thaliana |
AT1G05960:exon:6 | 160 | Chr1: 1814926-1815085 | Arabidopsis thaliana |
AT1G05960:exon:5 | 69 | Chr1: 1815174-1815242 | Arabidopsis thaliana |
AT1G05960:exon:2 | 74 | Chr1: 1815392-1815465 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05960:five_prime_UTR:1 | 177 | Chr1: 1815392-1815568 | Arabidopsis thaliana |
AT1G05960:five_prime_UTR:3 | 26 | Chr1: 1815326-1815351 | Arabidopsis thaliana |
AT1G05960:five_prime_UTR:4 | 178 | Chr1: 1815174-1815351 | Arabidopsis thaliana |
AT1G05960:five_prime_UTR:6 | 25 | Chr1: 1815061-1815085 | Arabidopsis thaliana |
AT1G05960:five_prime_UTR:5 | 69 | Chr1: 1815174-1815242 | Arabidopsis thaliana |
AT1G05960:five_prime_UTR:2 | 74 | Chr1: 1815392-1815465 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G05960.1 | 3738 | Chr1: 1807960-1815568 |
AT1G05960.4 | 3583 | Chr1: 1807964-1815351 |
AT1G05960.3 | 3666 | Chr1: 1807964-1815351 |
AT1G05960.2 | 3685 | Chr1: 1807973-1815465 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05960:three_prime_UTR:3 | 518 | Chr1: 1807960-1808477 | Arabidopsis thaliana |
AT1G05960:three_prime_UTR:2 | 514 | Chr1: 1807964-1808477 | Arabidopsis thaliana |
AT1G05960:three_prime_UTR:1 | 505 | Chr1: 1807973-1808477 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...