External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05830:CDS:1 | 626 | Chr1: 1754452-1755077 | Arabidopsis thaliana |
AT1G05830:CDS:2 | 52 | Chr1: 1755262-1755313 | Arabidopsis thaliana |
AT1G05830:CDS:3 | 75 | Chr1: 1755408-1755482 | Arabidopsis thaliana |
AT1G05830:CDS:4 | 220 | Chr1: 1755563-1755782 | Arabidopsis thaliana |
AT1G05830:CDS:5 | 127 | Chr1: 1756068-1756194 | Arabidopsis thaliana |
AT1G05830:CDS:6 | 105 | Chr1: 1756311-1756415 | Arabidopsis thaliana |
AT1G05830:CDS:7 | 206 | Chr1: 1756562-1756767 | Arabidopsis thaliana |
AT1G05830:CDS:8 | 93 | Chr1: 1756865-1756957 | Arabidopsis thaliana |
AT1G05830:CDS:9 | 98 | Chr1: 1757047-1757144 | Arabidopsis thaliana |
AT1G05830:CDS:10 | 162 | Chr1: 1757227-1757388 | Arabidopsis thaliana |
AT1G05830:CDS:11 | 144 | Chr1: 1757734-1757877 | Arabidopsis thaliana |
AT1G05830:CDS:12 | 48 | Chr1: 1757974-1758021 | Arabidopsis thaliana |
AT1G05830:CDS:13 | 118 | Chr1: 1758146-1758263 | Arabidopsis thaliana |
AT1G05830:CDS:14 | 66 | Chr1: 1758341-1758406 | Arabidopsis thaliana |
AT1G05830:CDS:15 | 62 | Chr1: 1758523-1758584 | Arabidopsis thaliana |
AT1G05830:CDS:16 | 57 | Chr1: 1758737-1758793 | Arabidopsis thaliana |
AT1G05830:CDS:17 | 69 | Chr1: 1758924-1758992 | Arabidopsis thaliana |
AT1G05830:CDS:18 | 196 | Chr1: 1759115-1759310 | Arabidopsis thaliana |
AT1G05830:CDS:19 | 246 | Chr1: 1759618-1759863 | Arabidopsis thaliana |
AT1G05830:CDS:20 | 62 | Chr1: 1760191-1760252 | Arabidopsis thaliana |
AT1G05830:CDS:21 | 78 | Chr1: 1760335-1760412 | Arabidopsis thaliana |
AT1G05830:CDS:22 | 96 | Chr1: 1760717-1760812 | Arabidopsis thaliana |
AT1G05830:CDS:23 | 104 | Chr1: 1760902-1761005 | Arabidopsis thaliana |
AT1G05830:CDS:24 | 142 | Chr1: 1761084-1761225 | Arabidopsis thaliana |
AT1G05830:CDS:1.1 | 626 | Chr1: 1754452-1755077 | Arabidopsis thaliana |
AT1G05830:CDS:2.1 | 52 | Chr1: 1755262-1755313 | Arabidopsis thaliana |
AT1G05830:CDS:3.1 | 75 | Chr1: 1755408-1755482 | Arabidopsis thaliana |
AT1G05830:CDS:4.1 | 220 | Chr1: 1755563-1755782 | Arabidopsis thaliana |
AT1G05830:CDS:5.1 | 127 | Chr1: 1756068-1756194 | Arabidopsis thaliana |
AT1G05830:CDS:6.1 | 105 | Chr1: 1756311-1756415 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05830:exon:27 | 734 | Chr1: 1761084-1761817 | Arabidopsis thaliana |
AT1G05830:exon:1 | 948 | Chr1: 1754130-1755077 | Arabidopsis thaliana |
AT1G05830:exon:29 | 517 | Chr1: 1761301-1761817 | Arabidopsis thaliana |
AT1G05830:exon:2 | 918 | Chr1: 1754160-1755077 | Arabidopsis thaliana |
AT1G05830:exon:28 | 81 | Chr1: 1761301-1761381 | Arabidopsis thaliana |
AT1G05830:exon:32 | 355 | Chr1: 1761555-1761909 | Arabidopsis thaliana |
AT1G05830:exon:3 | 834 | Chr1: 1754244-1755077 | Arabidopsis thaliana |
AT1G05830:exon:4 | 52 | Chr1: 1755262-1755313 | Arabidopsis thaliana |
AT1G05830:exon:5 | 75 | Chr1: 1755408-1755482 | Arabidopsis thaliana |
AT1G05830:exon:6 | 220 | Chr1: 1755563-1755782 | Arabidopsis thaliana |
AT1G05830:exon:7 | 127 | Chr1: 1756068-1756194 | Arabidopsis thaliana |
AT1G05830:exon:8 | 105 | Chr1: 1756311-1756415 | Arabidopsis thaliana |
AT1G05830:exon:9 | 206 | Chr1: 1756562-1756767 | Arabidopsis thaliana |
AT1G05830:exon:10 | 93 | Chr1: 1756865-1756957 | Arabidopsis thaliana |
AT1G05830:exon:11 | 98 | Chr1: 1757047-1757144 | Arabidopsis thaliana |
AT1G05830:exon:12 | 162 | Chr1: 1757227-1757388 | Arabidopsis thaliana |
AT1G05830:exon:13 | 144 | Chr1: 1757734-1757877 | Arabidopsis thaliana |
AT1G05830:exon:14 | 48 | Chr1: 1757974-1758021 | Arabidopsis thaliana |
AT1G05830:exon:15 | 118 | Chr1: 1758146-1758263 | Arabidopsis thaliana |
AT1G05830:exon:16 | 66 | Chr1: 1758341-1758406 | Arabidopsis thaliana |
AT1G05830:exon:17 | 62 | Chr1: 1758523-1758584 | Arabidopsis thaliana |
AT1G05830:exon:18 | 57 | Chr1: 1758737-1758793 | Arabidopsis thaliana |
AT1G05830:exon:19 | 69 | Chr1: 1758924-1758992 | Arabidopsis thaliana |
AT1G05830:exon:20 | 196 | Chr1: 1759115-1759310 | Arabidopsis thaliana |
AT1G05830:exon:21 | 246 | Chr1: 1759618-1759863 | Arabidopsis thaliana |
AT1G05830:exon:22 | 62 | Chr1: 1760191-1760252 | Arabidopsis thaliana |
AT1G05830:exon:23 | 78 | Chr1: 1760335-1760412 | Arabidopsis thaliana |
AT1G05830:exon:24 | 96 | Chr1: 1760717-1760812 | Arabidopsis thaliana |
AT1G05830:exon:25 | 104 | Chr1: 1760902-1761005 | Arabidopsis thaliana |
AT1G05830:exon:26 | 145 | Chr1: 1761084-1761228 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05830:five_prime_UTR:1 | 322 | Chr1: 1754130-1754451 | Arabidopsis thaliana |
AT1G05830:five_prime_UTR:2 | 292 | Chr1: 1754160-1754451 | Arabidopsis thaliana |
AT1G05830:five_prime_UTR:3 | 208 | Chr1: 1754244-1754451 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G05830.3 | 4166 | Chr1: 1754130-1761817 |
AT1G05830.4 | 4094 | Chr1: 1754130-1761817 |
AT1G05830.1 | 3983 | Chr1: 1754160-1761909 |
AT1G05830.2 | 3799 | Chr1: 1754244-1761817 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05830:three_prime_UTR:2 | 592 | Chr1: 1761226-1761817 | Arabidopsis thaliana |
AT1G05830:three_prime_UTR:4 | 517 | Chr1: 1761301-1761817 | Arabidopsis thaliana |
AT1G05830:three_prime_UTR:3 | 81 | Chr1: 1761301-1761381 | Arabidopsis thaliana |
AT1G05830:three_prime_UTR:7 | 355 | Chr1: 1761555-1761909 | Arabidopsis thaliana |
AT1G05830:three_prime_UTR:1 | 3 | Chr1: 1761226-1761228 | Arabidopsis thaliana |
AT1G05830:three_prime_UTR:5 | 73 | Chr1: 1761309-1761381 | Arabidopsis thaliana |
AT1G05830:three_prime_UTR:6 | 263 | Chr1: 1761555-1761817 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
ATX2_ARATH | developmental stage | Accumulates in adult plants, especially in rosette leaves and roots (but not in the vasculature and in tips) (PubMed:18375658). Weakly expressed in inflorescence nodes and at the base of the flowers (PubMed:18375658). In flowers, present in pollen and, at low levels, at the tips of the stigma (PubMed:18375658). In seedlings, observed in the vasculature and in the shoot apical meristems (PubMed:18375656). |
ATX2_ARATH | function | Histone methyltransferase (PubMed:18375658). Dimethylates 'Lys-4' of histone H3 (H3K4me2) (PubMed:18375658, PubMed:24102415). H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation (PubMed:18375658). Methylates only a limited fraction of nucleosomes of target genes (e.g. NAP and XTH33) (PubMed:18375658). Involved in epigenetic regulation of the floral repressor FLC and FT to prevent the transition from vegetative to reproductive development (PubMed:18375656, PubMed:24102415). |
ATX2_ARATH | similarity | Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. |
ATX2_ARATH | tissue specificity | Expressed in roots, leaves and flowers and, to a lower extent, in young seedlings. |
Function
Gene Ontology
cellular component | |
---|---|
Set1C/COMPASS complex | ECO |
molecular function | |
histone H3K4 methyltransferase activity | ECO |
histone H3K4 dimethyltransferase activity | ECO |
metal ion binding | ECO |
biological process | |
vegetative to reproductive phase transition of meristem | ECO |
regulation of DNA-templated transcription | ECO |
epigenetic regulation of gene expression | ECO |
methylation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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