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Gene : AT1G05577 A. thaliana

DB identifier  ? AT1G05577 Secondary Identifier  ? locus:504956226
Brief Description  UPSTREAM OF FLC protein (DUF966)
TAIR Computational Description  UPSTREAM OF FLC protein (DUF966);(source:Araport11)
TAIR Curator Summary  SOK1 is a DUF966 domain containing protein. It is expressed during embryogenesis in the apical-lateral plasma membrane. SOK1 can form homodimers and it's polar localization of SOK1 depends on N terminal domains within the protein. Misexpression of SOK1 or delocalization alters cell division planes.
TAIR Short Description  Domain of unknown function (DUF966)
TAIR Aliases  SOK1

0 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2047  
Location: Chr1:1662352-1664398 reverse strand

Gene models - AT1G05577 AT1G05577

? Gene models

Transcripts: 1  Exons: 6  Introns: 5 

Overlapping Features

? Genome features that overlap coordinates of this Gene

7 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SOK1_ARATH developmental stage During embryogenesis, first observed in the apical side of lower tier inner cells at the early globular stage (PubMed:30737509). At transition to heart stage and later in the post-embryonic root and lateral roots, accumulates at the outer apical corner or outer lateral side of young vascular cells, including the pericycle, and outer corners of the hypophysis (PubMed:30737509). Also present in the columella root cap of the primary root (PubMed:30737509).
SOK1_ARATH function SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes, probably by guiding ANGUSTIFOLIA (AN) polarized localization.
SOK1_ARATH similarity Belongs to the SOSEKI family.
SOK1_ARATH subcellular location SOSEKI proteins (SOK1-5) integrate apical-basal and radial organismal axes to localize to polar cell edges in roots, pointing towards the endodermis, mainly to inner apical edges.
SOK1_ARATH tissue specificity Expressed during embryogenesis and in roots.

1 Proteins

Function

Gene Ontology

cellular component
apical plasma membrane  ? ECO  
molecular function
protein homodimerization activity  ? ECO  
biological process
specification of plant organ axis polarity  ? ECO  
plant organ morphogenesis  ? ECO  
regulation of root morphogenesis  ? ECO  
regulation of cell division  ? ECO  
protein polymerization  ? ECO  
cell division  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets