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Gene : SDE3 A. thaliana

DB identifier  ? AT1G05460 Secondary Identifier  ? locus:2200996
Name  ? SILENCING DEFECTIVE Brief Description  P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Computational Description  P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.
TAIR Short Description  P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases  SDE3

1 Gene Rifs

1 Organism

16 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3887  
Location: Chr1:1601148-1605034 reverse strand

Gene models - SDE3 AT1G05460

? Gene models

Transcripts: 2  Exons: 11  Introns: 9 

Overlapping Features Displayer

10 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SDE3_ARATH function Probable RNA helicase required for post-transcriptional gene silencing (PTGS), a process that provides protection in plants against virus infection and can suppress expression of transgenes. Plays a central role in RNA interference (RNAi) process, a process that mediates mRNA destruction of translational repression. Required for the assembly of the RISC complex, a complex required for target RNA destruction or repression. May be required in the RISC assembly to unwind miRNAs, in the production of single-stranded miRNA from the double-stranded miRNA, a key step in RISC formation. Involved in the amplification of sense-PTGS (S-PTGS), leading to siRNA production. Required for the maintenance but not the initiation of tobacco rattle virus (TRV)-mediated silencing, probably by mediating/maintaining DNA methylation and chromatin-based transcriptional gene silencing at some genomic locations.
SDE3_ARATH A0A1P8AMM9_ARATH similarity Belongs to the DNA2/NAM7 helicase family. SDE3 subfamily.

2 Proteins

Function

Gene Ontology Displayer

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets