External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05380:CDS:1 | 1965 | Chr1: 1577231-1579195 | Arabidopsis thaliana |
AT1G05380:CDS:2 | 127 | Chr1: 1579314-1579440 | Arabidopsis thaliana |
AT1G05380:CDS:3 | 86 | Chr1: 1579534-1579619 | Arabidopsis thaliana |
AT1G05380:CDS:4 | 239 | Chr1: 1580030-1580268 | Arabidopsis thaliana |
AT1G05380:CDS:5 | 87 | Chr1: 1580625-1580711 | Arabidopsis thaliana |
AT1G05380:CDS:6 | 100 | Chr1: 1581184-1581283 | Arabidopsis thaliana |
AT1G05380:CDS:7 | 813 | Chr1: 1581378-1582190 | Arabidopsis thaliana |
AT1G05380:CDS:1.1 | 1965 | Chr1: 1577231-1579195 | Arabidopsis thaliana |
AT1G05380:CDS:2.1 | 127 | Chr1: 1579314-1579440 | Arabidopsis thaliana |
AT1G05380:CDS:3.1 | 86 | Chr1: 1579534-1579619 | Arabidopsis thaliana |
AT1G05380:CDS:4.1 | 239 | Chr1: 1580030-1580268 | Arabidopsis thaliana |
AT1G05380:CDS:5.1 | 87 | Chr1: 1580625-1580711 | Arabidopsis thaliana |
AT1G05380:CDS:6.1 | 100 | Chr1: 1581184-1581283 | Arabidopsis thaliana |
AT1G05380:CDS:7.1 | 813 | Chr1: 1581378-1582190 | Arabidopsis thaliana |
AT1G05380:CDS:1.2 | 1965 | Chr1: 1577231-1579195 | Arabidopsis thaliana |
AT1G05380:CDS:2.2 | 127 | Chr1: 1579314-1579440 | Arabidopsis thaliana |
AT1G05380:CDS:3.2 | 86 | Chr1: 1579534-1579619 | Arabidopsis thaliana |
AT1G05380:CDS:4.2 | 239 | Chr1: 1580030-1580268 | Arabidopsis thaliana |
AT1G05380:CDS:5.2 | 87 | Chr1: 1580625-1580711 | Arabidopsis thaliana |
AT1G05380:CDS:6.2 | 100 | Chr1: 1581184-1581283 | Arabidopsis thaliana |
AT1G05380:CDS:7.2 | 813 | Chr1: 1581378-1582190 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05380:exon:1 | 327 | Chr1: 1576822-1577148 | Arabidopsis thaliana |
AT1G05380:exon:11 | 1289 | Chr1: 1581378-1582666 | Arabidopsis thaliana |
AT1G05380:exon:2 | 2359 | Chr1: 1576837-1579195 | Arabidopsis thaliana |
AT1G05380:exon:10 | 1246 | Chr1: 1581378-1582623 | Arabidopsis thaliana |
AT1G05380:exon:3 | 265 | Chr1: 1576863-1577127 | Arabidopsis thaliana |
AT1G05380:exon:4 | 1974 | Chr1: 1577222-1579195 | Arabidopsis thaliana |
AT1G05380:exon:5 | 127 | Chr1: 1579314-1579440 | Arabidopsis thaliana |
AT1G05380:exon:6 | 86 | Chr1: 1579534-1579619 | Arabidopsis thaliana |
AT1G05380:exon:7 | 239 | Chr1: 1580030-1580268 | Arabidopsis thaliana |
AT1G05380:exon:8 | 87 | Chr1: 1580625-1580711 | Arabidopsis thaliana |
AT1G05380:exon:9 | 100 | Chr1: 1581184-1581283 | Arabidopsis thaliana |
AT1G05380:exon:12 | 1295 | Chr1: 1581378-1582672 | Arabidopsis thaliana |
AT1G05385:exon:4 | 214 | Chr1: 1582671-1582884 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05380:five_prime_UTR:1 | 327 | Chr1: 1576822-1577148 | Arabidopsis thaliana |
AT1G05380:five_prime_UTR:2 | 394 | Chr1: 1576837-1577230 | Arabidopsis thaliana |
AT1G05380:five_prime_UTR:3 | 265 | Chr1: 1576863-1577127 | Arabidopsis thaliana |
AT1G05380:five_prime_UTR:4 | 9 | Chr1: 1577222-1577230 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G05385 | locus:505006101 | LPA19 | LOW PSII ACCUMULATION 19 | 1090 | Chr1: 1582671-1583760 | A. thaliana | photosystem II 11 kDa protein-like protein;(source:Araport11) | Encodes a Psb27 homolog involved in photosystem II biogenesis. | photosystem II 11 kDa protein-related | LPA19, Psb27-H1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G05380.2 | 4229 | Chr1: 1576822-1582666 |
AT1G05380.3 | 4244 | Chr1: 1576837-1582623 |
AT1G05380.1 | 4173 | Chr1: 1576863-1582672 |
AT1G05385.2 | 696 | Chr1: 1582671-1583446 |
AT1G05385.1 | 788 | Chr1: 1582671-1583760 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G05380:three_prime_UTR:2 | 476 | Chr1: 1582191-1582666 | Arabidopsis thaliana |
AT1G05380:three_prime_UTR:1 | 433 | Chr1: 1582191-1582623 | Arabidopsis thaliana |
AT1G05380:three_prime_UTR:3 | 482 | Chr1: 1582191-1582672 | Arabidopsis thaliana |
AT1G05385:three_prime_UTR:1 | 76 | Chr1: 1582671-1582746 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
transcription cis-regulatory region binding | ECO |
metal ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...