help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT1G05120 A. thaliana

DB identifier  ? AT1G05120 Secondary Identifier  ? locus:2207175
Brief Description  Helicase protein with RING/U-box domain-containing protein
TAIR Computational Description  Helicase protein with RING/U-box domain-containing protein;(source:Araport11)
TAIR Curator Summary  One of two paralogs of yeast RAD1, the other being At1g02670. Both are expressed throughout plant growth with RAD16 as the dominant transcript. Mutants show increased sensitivity to UV.
TAIR Short Description  Helicase protein with RING/U-box domain
TAIR Aliases  AtRAD16

0 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4967  
Location: Chr1:1471323-1476289 reverse strand

Gene models - AT1G05120 AT1G05120

? Gene models

Transcripts: 2  Exons: 32  Introns: 30 

Overlapping Features

? Genome features that overlap coordinates of this Gene

20 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
A0A178W5J4_ARATH A0A1P8AWF9_ARATH similarity Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.

2 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
ATP binding  ? ECO  
ATP-dependent chromatin remodeler activity  ? ECO  
helicase activity  ? ECO  
hydrolase activity  ? ECO  
metal ion binding  ? ECO  
biological process
No terms in this category.

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets