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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04945:CDS:1 | 187 | Chr1: 1399588-1399774 | Arabidopsis thaliana |
AT1G04945:CDS:2 | 576 | Chr1: 1399979-1400554 | Arabidopsis thaliana |
AT1G04945:CDS:4 | 180 | Chr1: 1400976-1401155 | Arabidopsis thaliana |
AT1G04945:CDS:5 | 205 | Chr1: 1401303-1401507 | Arabidopsis thaliana |
AT1G04945:CDS:6 | 69 | Chr1: 1401676-1401744 | Arabidopsis thaliana |
AT1G04945:CDS:7 | 133 | Chr1: 1401846-1401978 | Arabidopsis thaliana |
AT1G04945:CDS:9 | 585 | Chr1: 1402067-1402651 | Arabidopsis thaliana |
AT1G04945:CDS:3 | 187 | Chr1: 1400969-1401155 | Arabidopsis thaliana |
AT1G04945:CDS:5.1 | 205 | Chr1: 1401303-1401507 | Arabidopsis thaliana |
AT1G04945:CDS:6.1 | 69 | Chr1: 1401676-1401744 | Arabidopsis thaliana |
AT1G04945:CDS:7.1 | 133 | Chr1: 1401846-1401978 | Arabidopsis thaliana |
AT1G04945:CDS:9.1 | 585 | Chr1: 1402067-1402651 | Arabidopsis thaliana |
AT1G04945:CDS:3.1 | 187 | Chr1: 1400969-1401155 | Arabidopsis thaliana |
AT1G04945:CDS:5.2 | 205 | Chr1: 1401303-1401507 | Arabidopsis thaliana |
AT1G04945:CDS:6.2 | 69 | Chr1: 1401676-1401744 | Arabidopsis thaliana |
AT1G04945:CDS:7.2 | 133 | Chr1: 1401846-1401978 | Arabidopsis thaliana |
AT1G04945:CDS:8 | 454 | Chr1: 1402067-1402520 | Arabidopsis thaliana |
AT1G04945:CDS:11 | 29 | Chr1: 1402623-1402651 | Arabidopsis thaliana |
AT1G04945:CDS:3.2 | 187 | Chr1: 1400969-1401155 | Arabidopsis thaliana |
AT1G04945:CDS:5.3 | 205 | Chr1: 1401303-1401507 | Arabidopsis thaliana |
AT1G04945:CDS:6.3 | 69 | Chr1: 1401676-1401744 | Arabidopsis thaliana |
AT1G04945:CDS:7.3 | 133 | Chr1: 1401846-1401978 | Arabidopsis thaliana |
AT1G04945:CDS:8.1 | 454 | Chr1: 1402067-1402520 | Arabidopsis thaliana |
AT1G04945:CDS:10 | 56 | Chr1: 1402596-1402651 | Arabidopsis thaliana |
AT1G04940:CDS:1 | 187 | Chr1: 1399588-1399774 | Arabidopsis thaliana |
AT1G04940:CDS:2 | 638 | Chr1: 1399979-1400616 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04945:exon:1 | 149 | Chr1: 1399174-1399322 | Arabidopsis thaliana |
AT1G04945:exon:2 | 43 | Chr1: 1399423-1399465 | Arabidopsis thaliana |
AT1G04945:exon:3 | 205 | Chr1: 1399570-1399774 | Arabidopsis thaliana |
AT1G04945:exon:4 | 576 | Chr1: 1399979-1400554 | Arabidopsis thaliana |
AT1G04945:exon:7 | 180 | Chr1: 1400976-1401155 | Arabidopsis thaliana |
AT1G04945:exon:12 | 972 | Chr1: 1402067-1403038 | Arabidopsis thaliana |
AT1G04945:exon:13 | 1037 | Chr1: 1402067-1403103 | Arabidopsis thaliana |
AT1G04945:exon:5 | 254 | Chr1: 1400902-1401155 | Arabidopsis thaliana |
AT1G04945:exon:15 | 481 | Chr1: 1402623-1403103 | Arabidopsis thaliana |
AT1G04945:exon:6 | 248 | Chr1: 1400908-1401155 | Arabidopsis thaliana |
AT1G04945:exon:8 | 205 | Chr1: 1401303-1401507 | Arabidopsis thaliana |
AT1G04945:exon:9 | 69 | Chr1: 1401676-1401744 | Arabidopsis thaliana |
AT1G04945:exon:10 | 133 | Chr1: 1401846-1401978 | Arabidopsis thaliana |
AT1G04945:exon:11 | 454 | Chr1: 1402067-1402520 | Arabidopsis thaliana |
AT1G04945:exon:14 | 517 | Chr1: 1402596-1403112 | Arabidopsis thaliana |
AT1G04940:exon:1 | 141 | Chr1: 1399182-1399322 | Arabidopsis thaliana |
AT1G04940:exon:2 | 205 | Chr1: 1399570-1399774 | Arabidopsis thaliana |
AT1G04940:exon:3 | 852 | Chr1: 1399979-1400830 | Arabidopsis thaliana |
AT1G04950:exon:15 | 356 | Chr1: 1403085-1403440 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04945:five_prime_UTR:1 | 149 | Chr1: 1399174-1399322 | Arabidopsis thaliana |
AT1G04945:five_prime_UTR:2 | 43 | Chr1: 1399423-1399465 | Arabidopsis thaliana |
AT1G04945:five_prime_UTR:3 | 18 | Chr1: 1399570-1399587 | Arabidopsis thaliana |
AT1G04945:five_prime_UTR:4 | 67 | Chr1: 1400902-1400968 | Arabidopsis thaliana |
AT1G04945:five_prime_UTR:5 | 61 | Chr1: 1400908-1400968 | Arabidopsis thaliana |
AT1G04940:five_prime_UTR:1 | 141 | Chr1: 1399182-1399322 | Arabidopsis thaliana |
AT1G04940:five_prime_UTR:2 | 18 | Chr1: 1399570-1399587 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G04940 | locus:2010617 | Tic20-I | translocon at the inner envelope membrane of chloroplasts 20-I | 1649 | Chr1: 1399182-1400830 | A. thaliana | translocon at the inner envelope membrane of chloroplasts 20;(source:Araport11) | Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation. The Arabidopsis genome encodes four Tic20 homologous proteins, AT1G04940(Tic20-I), AT2G47840(Tic20-II), AT4G03320(Tic20-IV) and AT5G55710(Tic20-V). | translocon at the inner envelope membrane of chloroplasts 20 | atTIC20, AtTic20-I, TIC20, Tic20-I |
AT1G04950 | locus:2010667 | TAFII59 | TATA BOX ASSOCIATED FACTOR II 59 | 4447 | Chr1: 1403085-1407531 | A. thaliana | TATA BOX ASSOCIATED FACTOR II 59;(source:Araport11) | Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. | TATA BOX ASSOCIATED FACTOR II 59 | ATTAF6, EMB2781, TAF6, TAFII59 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G04945.3 | 2532 | Chr1: 1399174-1403038 |
AT1G04945.2 | 1698 | Chr1: 1400902-1403103 |
AT1G04945.4 | 1596 | Chr1: 1400902-1403103 |
AT1G04945.1 | 1626 | Chr1: 1400908-1403112 |
AT1G04940.1 | 1198 | Chr1: 1399182-1400830 |
AT1G04950.1 | 2254 | Chr1: 1403085-1407530 |
AT1G04950.3 | 2362 | Chr1: 1403085-1407530 |
AT1G04950.2 | 2140 | Chr1: 1403085-1407531 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04945:three_prime_UTR:1 | 387 | Chr1: 1402652-1403038 | Arabidopsis thaliana |
AT1G04945:three_prime_UTR:2 | 452 | Chr1: 1402652-1403103 | Arabidopsis thaliana |
AT1G04945:three_prime_UTR:3 | 461 | Chr1: 1402652-1403112 | Arabidopsis thaliana |
AT1G04940:three_prime_UTR:1 | 214 | Chr1: 1400617-1400830 | Arabidopsis thaliana |
AT1G04950:three_prime_UTR:2 | 356 | Chr1: 1403085-1403440 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4I765_ARATH | similarity | Belongs to the Tic20 family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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