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Gene : AT1G04880 A. thaliana

DB identifier  ? AT1G04880 Secondary Identifier  ? locus:2010587
Brief Description  HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein
TAIR Computational Description  HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
TAIR Curator Summary  Encodes a ARID-HMG DNA-binding protein that functions in pollen tube growth through the regulation of gene expression by interacting with the transcription factors AGL66 and AGL104.
TAIR Short Description  HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
TAIR Aliases  AtHMGB15, HMGBD15

2 Gene Rifs

1 Organism

14 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3405  
Location: Chr1:1375824-1379228 reverse strand

Gene models - AT1G04880 AT1G04880

? Gene models

Transcripts: 1  Exons: 7  Introns: 6 

Overlapping Features

? Genome features that overlap coordinates of this Gene

8 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
HMG15_ARATH function Binds preferentially DNA with A/T-rich content.
HMG15_ARATH similarity Belongs to the HMGB family.

1 Proteins

Function

Gene Ontology

cellular component
pollen tube  ? ECO  
nucleus  ? ECO  
molecular function
DNA-binding transcription factor activity  ? ECO  
transcription cis-regulatory region binding  ? ECO  
four-way junction DNA binding  ? ECO  
biological process
regulation of DNA-templated transcription  ? ECO  
pollen germination  ? ECO  
glucosinolate metabolic process  ? ECO  
pollen tube growth  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets