External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04230:CDS:1 | 153 | Chr1: 1125576-1125728 | Arabidopsis thaliana |
AT1G04230:CDS:2 | 130 | Chr1: 1125995-1126124 | Arabidopsis thaliana |
AT1G04230:CDS:3 | 131 | Chr1: 1126233-1126363 | Arabidopsis thaliana |
AT1G04230:CDS:4 | 139 | Chr1: 1126535-1126673 | Arabidopsis thaliana |
AT1G04230:CDS:5 | 115 | Chr1: 1126848-1126962 | Arabidopsis thaliana |
AT1G04230:CDS:6 | 64 | Chr1: 1127193-1127256 | Arabidopsis thaliana |
AT1G04230:CDS:7 | 240 | Chr1: 1127434-1127673 | Arabidopsis thaliana |
AT1G04230:CDS:9 | 6 | Chr1: 1127823-1127828 | Arabidopsis thaliana |
AT1G04230:CDS:1.1 | 153 | Chr1: 1125576-1125728 | Arabidopsis thaliana |
AT1G04230:CDS:2.1 | 130 | Chr1: 1125995-1126124 | Arabidopsis thaliana |
AT1G04230:CDS:3.1 | 131 | Chr1: 1126233-1126363 | Arabidopsis thaliana |
AT1G04230:CDS:4.1 | 139 | Chr1: 1126535-1126673 | Arabidopsis thaliana |
AT1G04230:CDS:5.1 | 115 | Chr1: 1126848-1126962 | Arabidopsis thaliana |
AT1G04230:CDS:6.1 | 64 | Chr1: 1127193-1127256 | Arabidopsis thaliana |
AT1G04230:CDS:8 | 237 | Chr1: 1127437-1127673 | Arabidopsis thaliana |
AT1G04230:CDS:9.1 | 6 | Chr1: 1127823-1127828 | Arabidopsis thaliana |
AT1G04240:CDS:4 | 76 | Chr1: 1128564-1128639 | Arabidopsis thaliana |
AT1G04240:CDS:3 | 309 | Chr1: 1128744-1129052 | Arabidopsis thaliana |
AT1G04240:CDS:4.1 | 76 | Chr1: 1128564-1128639 | Arabidopsis thaliana |
AT1G04240:CDS:3.1 | 309 | Chr1: 1128744-1129052 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04230:exon:1 | 214 | Chr1: 1125515-1125728 | Arabidopsis thaliana |
AT1G04230:exon:8 | 240 | Chr1: 1127434-1127673 | Arabidopsis thaliana |
AT1G04230:exon:11 | 966 | Chr1: 1127823-1128788 | Arabidopsis thaliana |
AT1G04230:exon:2 | 211 | Chr1: 1125518-1125728 | Arabidopsis thaliana |
AT1G04230:exon:3 | 130 | Chr1: 1125995-1126124 | Arabidopsis thaliana |
AT1G04230:exon:4 | 131 | Chr1: 1126233-1126363 | Arabidopsis thaliana |
AT1G04230:exon:5 | 139 | Chr1: 1126535-1126673 | Arabidopsis thaliana |
AT1G04230:exon:6 | 115 | Chr1: 1126848-1126962 | Arabidopsis thaliana |
AT1G04230:exon:7 | 64 | Chr1: 1127193-1127256 | Arabidopsis thaliana |
AT1G04230:exon:9 | 237 | Chr1: 1127437-1127673 | Arabidopsis thaliana |
AT1G04230:exon:10 | 346 | Chr1: 1127823-1128168 | Arabidopsis thaliana |
AT1G04240:exon:5 | 491 | Chr1: 1128149-1128639 | Arabidopsis thaliana |
AT1G04240:exon:4 | 463 | Chr1: 1128177-1128639 | Arabidopsis thaliana |
AT1G04240:exon:3 | 309 | Chr1: 1128744-1129052 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04230:five_prime_UTR:1 | 61 | Chr1: 1125515-1125575 | Arabidopsis thaliana |
AT1G04230:five_prime_UTR:2 | 58 | Chr1: 1125518-1125575 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G04240 | locus:2018379 | SHY2 | SHORT HYPOCOTYL 2 | 1541 | Chr1: 1128149-1129689 | A. thaliana | AUX/IAA transcriptional regulator family protein;(source:Araport11) | SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. | AUX/IAA transcriptional regulator family protein | IAA3, SHY2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G04230.1 | 1999 | Chr1: 1125515-1128788 |
AT1G04230.2 | 1373 | Chr1: 1125518-1128168 |
AT1G04240.2 | 1355 | Chr1: 1128149-1129689 |
AT1G04240.1 | 1189 | Chr1: 1128177-1129551 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04230:three_prime_UTR:2 | 960 | Chr1: 1127829-1128788 | Arabidopsis thaliana |
AT1G04230:three_prime_UTR:1 | 340 | Chr1: 1127829-1128168 | Arabidopsis thaliana |
AT1G04240:three_prime_UTR:2 | 415 | Chr1: 1128149-1128563 | Arabidopsis thaliana |
AT1G04240:three_prime_UTR:1 | 387 | Chr1: 1128177-1128563 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A178W126_ARATH A0A1P8ANS3_ARATH | similarity | Belongs to the EFG1 family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleolus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
rRNA processing | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...