help  | faq  | software  | BAR

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, pathways, authors, ontology terms, etc. (e.g. eve, embryo, zen, allele)
  • Use OR to search for either of two terms (e.g. fly OR drosophila) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. dros* for partial matches or fly AND NOT embryo to exclude a term

Search results 1 to 100 out of 5885 for cells

<< First    < Previous  |  Next >    Last >>
0.039s

Categories

Hits by Category

Hits by Organism

Type Details Score
Gene
Length: 2498  
Chromosome Location: Chr3: 20714946-20717443
Organism . Short Name: A. thaliana
TAIR Computational Description: Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
TAIR Curator Summary: A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant.Loss of function specifically affects glycosylinositolphosphorylceramide (GIPC) mannosylation.
TAIR Short Description: Nucleotide-diphospho-sugar transferases superfamily protein
TAIR Aliases: EPC1, GMT1
Gene
Length: 826  
Chromosome Location: Chr3: 3281306-3282131
Organism . Short Name: A. thaliana
TAIR Computational Description: LOSS OF GIANT CELLS FROM ORGANS;(source:Araport11)
TAIR Curator Summary: Encodes LGO (loss of giant cells from organs) required for endoreduplication in sepal giant cell formation. Giant cells in both leaves and sepals are absent in lgo mutants. LGO is a member of a plant specific cell cycle inhibitor family SIAMESE and was originally named as SMR1(SIAMESE RELATED 1).
TAIR Short Description: LOSS OF GIANT CELLS FROM ORGANS
TAIR Aliases: LGO, SMR1
Gene
Length: 6890  
Chromosome Location: Chr1: 12485318-12492207
Organism . Short Name: A. thaliana
TAIR Computational Description: FORMS APLOID AND BINUCLEATE CELLS 1A;(source:Araport11)
TAIR Curator Summary: Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the porposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown. The mRNA is cell-to-cell mobile.
TAIR Short Description: FORMS APLOID AND BINUCLEATE CELLS 1A
TAIR Aliases: FAB1D
Gene
Length: 6926  
Chromosome Location: Chr1: 26782048-26788973
Organism . Short Name: A. thaliana
TAIR Computational Description: FORMS APLOID AND BINUCLEATE CELLS 1C;(source:Araport11)
TAIR Curator Summary: Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the proposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown. The mRNA is cell-to-cell mobile.
TAIR Short Description: FORMS APLOID AND BINUCLEATE CELLS 1C
TAIR Aliases: FAB1C
Gene
Length: 7752  
Chromosome Location: Chr3: 4753705-4761456
Organism . Short Name: A. thaliana
TAIR Computational Description: phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.
TAIR Short Description: phosphatidylinositol-4-phosphate 5-kinase family protein
TAIR Aliases: FAB1B
Gene
Length: 9116  
Chromosome Location: Chr4: 16029209-16038324
Organism . Short Name: A. thaliana
TAIR Computational Description: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A;(source:Araport11)
TAIR Curator Summary: Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.
TAIR Short Description: 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases
TAIR Aliases: FAB1A
Gene
Length: 3255  
Chromosome Location: Chr3: 8097678-8100932
Organism . Short Name: A. thaliana
TAIR Computational Description: DNA repair (Rad51) family protein;(source:Araport11)
TAIR Curator Summary: Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.
TAIR Short Description: DNA repair (Rad51) family protein
TAIR Aliases: ARLIM15, ATDMC1, DMC1
Gene
Length: 3165  
Chromosome Location: Chr3: 7210310-7213474
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Governs the competence of pericycle cells to initiate lateral root primordium formation.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: PFA6
Gene
Length: 2843  
Chromosome Location: Chr1: 703847-706689
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Governs the competence of pericycle cells to initiate lateral root primordium formation.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: bHLH007, PFB2
Gene
Length: 2830  
Chromosome Location: Chr3: 17783331-17786160
Organism . Short Name: A. thaliana
TAIR Computational Description: DP-E2F-like 1;(source:Araport11)
TAIR Curator Summary: E2F-like protein, an inhibitor of the endocycle, preserves the mitotic state of proliferating cells by suppressing transcription of genes that are required for cells to enter the DNA endoreduplication cycle.
TAIR Short Description: DP-E2F-like 1
TAIR Aliases: DEL1, E2FE, E2L3
Gene
Length: 1653  
Chromosome Location: Chr1: 21064223-21065875
Organism . Short Name: A. thaliana
TAIR Computational Description: telomere-capping, CST complex subunit;(source:Araport11)
TAIR Curator Summary: Required for the maintenance of stem cells through a reduction in DNA damage.
TAIR Short Description: NULL
TAIR Aliases: MDO1, TEN1
Gene
Length: 2554  
Chromosome Location: Chr5: 19940462-19943015
Organism . Short Name: A. thaliana
TAIR Computational Description: Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
TAIR Curator Summary: Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds and more specifically in mucilage secretory cells of seeds. Mutants have smaller mucilage cells and abnormal mucilage profiles.
TAIR Short Description: Plant invertase/pectin methylesterase inhibitor superfamily
TAIR Aliases: PME58, PMEI-PME58
Gene
Length: 2653  
Chromosome Location: Chr2: 12958116-12960768
Organism . Short Name: A. thaliana
TAIR Computational Description: tubulin folding cofactor A (KIESEL);(source:Araport11)
TAIR Curator Summary: mutant has embryo defect; enlarged embryo cells and endosperm nuclei; Tubulin Folding Cofactor A
TAIR Short Description: tubulin folding cofactor A (KIESEL)
TAIR Aliases: KIS, TFCA
Gene
Length: 2925  
Chromosome Location: Chr3: 4884563-4887487
Organism . Short Name: A. thaliana
TAIR Computational Description: geranylgeranyl pyrophosphate synthase 3;(source:Araport11)
TAIR Curator Summary: Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.
TAIR Short Description: geranylgeranyl pyrophosphate synthase 3
TAIR Aliases: AtGFPPS2, GFPPS2, GGPPS7, GGPS3
Gene
Length: 2648  
Chromosome Location: Chr1: 6520721-6523368
Organism . Short Name: A. thaliana
TAIR Computational Description: Major facilitator superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a low-affinity plasma membrane nitrate transporter expressed in the companion cells of root phloem.
TAIR Short Description: Major facilitator superfamily protein
TAIR Aliases: AtNPF2.9, NPF2.9, NRT1.9
Gene
Length: 2081  
Chromosome Location: Chr5: 22276343-22278423
Organism . Short Name: A. thaliana
TAIR Computational Description: Ras-related small GTP-binding family protein;(source:Araport11)
TAIR Curator Summary: Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes.
TAIR Short Description: Ras-related small GTP-binding family protein
TAIR Aliases: ATSGP1, SGP1
Gene
Length: 4216  
Chromosome Location: Chr2: 8677960-8682175
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Together with PFA1 and PFA3 governs the competence of pericycle cells to initiate lateral root primordium formation.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: PFA2, UKTF1
Gene
Length: 5661  
Chromosome Location: Chr4: 17989067-17994727
Organism . Short Name: A. thaliana
TAIR Computational Description: RPAP1-like, carboxy-terminal protein;(source:Araport11)
TAIR Curator Summary: Encodes MINIYO (IYO), a positive regulator of transcriptional elongation that is essential for cells to initiate differentiation.
TAIR Short Description: NULL
TAIR Aliases: IYO
Gene
Length: 3545  
Chromosome Location: Chr1: 7146636-7150180
Organism . Short Name: A. thaliana
TAIR Computational Description: catalase 1;(source:Araport11)
TAIR Curator Summary: Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2.
TAIR Short Description: catalase 1
TAIR Aliases: CAT1
Gene
Length: 3892  
Chromosome Location: Chr1: 11075398-11079289
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Together with PFA2 and PFA3 governs the competence of pericycle cells to initiate lateral root primordium formation.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: PFA1
Gene
Length: 4404  
Chromosome Location: Chr4: 2122507-2126910
Organism . Short Name: A. thaliana
TAIR Computational Description: ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
TAIR Curator Summary: Encodes a plasma membrane localized hyperosmolality gated calcium channel that is expressed in guard cells and roots.
TAIR Short Description: ERD (early-responsive to dehydration stress) family protein
TAIR Aliases: osca1, OSCA1.1
Gene
Length: 1798  
Chromosome Location: Chr4: 17343374-17345171
Organism . Short Name: A. thaliana
TAIR Computational Description: geranylgeranyl pyrophosphate synthase 1;(source:Araport11)
TAIR Curator Summary: Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. The mRNA is cell-to-cell mobile.
TAIR Short Description: geranylgeranyl pyrophosphate synthase 1
TAIR Aliases: AtGGPPS11, AtGGPS11, AtLSU, GGPPS11, GGPS1, IDS11, LSU
Gene
Length: 8790  
Chromosome Location: Chr3: 16011547-16020336
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein;(source:Araport11)
TAIR Curator Summary: homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.
TAIR Short Description: clone eighty-four
TAIR Aliases: CEF
Gene
Length: 4063  
Chromosome Location: Chr4: 14340951-14345013
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Member of basic helix loop helix protein family. Expressed primarily in vascular system. Overexpression causes ABA sensitivity. Together with PFA1 and PFA2 governs the competence of pericycle cells to initiate lateral root primordium formation. Governs the competence of pericycle cells to initiate lateral root primordium formation.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: BHLH68, PFA3
Gene
Length: 2467  
Chromosome Location: Chr4: 10366044-10368510
Organism . Short Name: A. thaliana
TAIR Computational Description: NOD26-like intrinsic protein 1;(source:Araport11)
TAIR Curator Summary: Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.When expressed in yeast cells can conduct hydrogen peroxide into those cells.
TAIR Short Description: NOD26-like intrinsic protein 1;2
TAIR Aliases: ATNLM2, NIP1;2, NLM2
Gene
Length: 2506  
Chromosome Location: Chr1: 6395769-6398274
Organism . Short Name: A. thaliana
TAIR Computational Description: galacturonosyltransferase 11;(source:Araport11)
TAIR Curator Summary: Encodes a protein with putative galacturonosyltransferase activity.GAUT11 is required for pectin synthesis in seed coat epidermal cells and normal mucilage release.
TAIR Short Description: galacturonosyltransferase 11
TAIR Aliases: GAUT11
Gene
Length: 1907  
Chromosome Location: Chr5: 25229938-25231844
Organism . Short Name: A. thaliana
TAIR Computational Description: Nodulin MtN3 family protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein that is expressed in vegetative cells of pollen. A member of the SWEET sucrose efflux transporter family proteins.
TAIR Short Description: Nodulin MtN3 family protein
TAIR Aliases: AtSWEET5, AtVEX1, SWEET5
Gene
Length: 3017  
Chromosome Location: Chr4: 16530346-16533362
Organism . Short Name: A. thaliana
TAIR Computational Description: BEL1-like homeodomain 6;(source:Araport11)
TAIR Curator Summary: Acts as a negative regulator of xylem vessel cells as a protein complex together with OVATE FAMILY PROTEIN1 (OFP1), OFP4, and MYB75.
TAIR Short Description: BEL1-like homeodomain 6
TAIR Aliases: BLH6
Gene
Length: 1087  
Chromosome Location: Chr1: 4260783-4261869
Organism . Short Name: A. thaliana
TAIR Computational Description: F-box associated ubiquitination effector family protein;(source:Araport11)
TAIR Curator Summary: F-box associated ubiquitination effector family protein;(source:Araport11). Expressed in guard cells and induced by ABA. Mutants are insensitive to ABA and osmotic stressors.
TAIR Short Description: F-box associated ubiquitination effector family protein
TAIR Aliases: AFBA1
Gene
Length: 1247  
Chromosome Location: Chr5: 24274876-24276122
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a nuclear adenylate kinase that interacts with a putative homolog of Rps14, AtRPS14-1 and affects the elongation of cells in the stem.
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: AAK6, AK6
Gene  
Length: 1709  
Chromosome Location: Chr3: 18524084-18525792
Organism . Short Name: A. thaliana
TAIR Computational Description: Peroxidase superfamily protein;(source:Araport11)
TAIR Curator Summary: Its expression is enriched in root hair cells (compared to non-root hair cells) and this enrichment is associated with increase in the transcription-associated mark trimethylation of H3 lysine 4 (H3K4me3) and decrease in the Polycomb silencing-associated mark trimethylation of H3 lysine 27 (H3K27me3) in root hair cells relative to non-root hair cells.
TAIR Short Description: Peroxidase superfamily protein
Gene  
Length: 1984  
Chromosome Location: Chr1: 26552576-26554559
Organism . Short Name: A. thaliana
TAIR Computational Description: Protein kinase superfamily protein;(source:Araport11)
TAIR Curator Summary: Its expression is enriched in root hair cells (compared to non-root hair cells) and this enrichment is associated with increase in the transcription-associated mark trimethylation of H3 lysine 4 (H3K4me3) and decrease in the Polycomb silencing-associated mark trimethylation of H3 lysine 27 (H3K27me3) in root hair cells relative to non-root hair cells.
TAIR Short Description: Protein kinase superfamily protein
Gene
Length: 5120  
Chromosome Location: Chr5: 5504242-5509361
Organism . Short Name: A. thaliana
TAIR Computational Description: Transducin family protein / WD-40 repeat family protein;(source:Araport11)
TAIR Curator Summary: Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.
TAIR Short Description: Transducin family protein / WD-40 repeat family protein
TAIR Aliases: TOZ
Gene
Length: 4296  
Chromosome Location: Chr3: 6174239-6178534
Organism . Short Name: A. thaliana
TAIR Computational Description: MAP kinase 9;(source:Araport11)
TAIR Curator Summary: Encodes a protein with similarity to MAP kinases (MAPK9).Expressed preferentially in guard cells and appears to be involved in reactive oxygen species mediated ABA signaling.
TAIR Short Description: MAP kinase 9
TAIR Aliases: MPK9
Gene
Length: 2376  
Chromosome Location: Chr3: 7644265-7646640
Organism . Short Name: A. thaliana
TAIR Computational Description: Ras-related small GTP-binding family protein;(source:Araport11)
TAIR Curator Summary: Monomeric G protein. Expressed in root epidermal cells that are destined to become atrichoblasts. Also expressed during pollen development and in the pollen tube tip.
TAIR Short Description: Ras-related small GTP-binding family protein
TAIR Aliases: ATSGP2, SGP2
Gene
Length: 3727  
Chromosome Location: Chr3: 21430922-21434648
Organism . Short Name: A. thaliana
TAIR Computational Description: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
TAIR Curator Summary: Required for maintenance of inflorescence and shoot SAMs and normal development of the derived vascular cambium, functions in the SAM to promote continuous organogenesis, affects SAM development through STM, where it affects intracellular localization of STM in SAM cells in the peripheral region and prevents STM localization toward the cell wall of SAM cells in the peripheral region.
TAIR Short Description: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
TAIR Aliases: FTIP3, MCTP3
Gene
Length: 3215  
Chromosome Location: Chr1: 19122161-19125375
Organism . Short Name: A. thaliana
TAIR Computational Description: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
TAIR Curator Summary: Required for maintenance of inflorescence and shoot SAMs and normal development of the derived vascular cambium, functions in the SAM to promote continuous organogenesis, affects SAM development through STM, where it affects intracellular localization of STM in SAM cells in the peripheral region and prevents STM localization toward the cell wall of SAM cells in the peripheral region.
TAIR Short Description: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
TAIR Aliases: FTIP4, MCTP4
Gene
Length: 4086  
Chromosome Location: Chr1: 20293151-20297236
Organism . Short Name: A. thaliana
TAIR Computational Description: sodium hydrogen exchanger 5;(source:Araport11)
TAIR Curator Summary: Encodes an endosomal Na(+)/H(+) antiporter: AT1G54370 (NHX5), AT1G79610 (NHX6). Double knockout nhx5 nhx6 showed reduced growth, with smaller and fewer cells and increased sensitivity to salinity.
TAIR Short Description: sodium hydrogen exchanger 5
TAIR Aliases: ATNHX5, NHX5
Gene
Length: 4329  
Chromosome Location: Chr1: 29952873-29957201
Organism . Short Name: A. thaliana
TAIR Computational Description: Na+/H+ antiporter 6;(source:Araport11)
TAIR Curator Summary: Encodes an endosomal Na(+)/H(+) antiporter: AT1G54370 (NHX5), AT1G79610 (NHX6). Double knockout nhx5 nhx6 showed reduced growth, with smaller and fewer cells and increased sensitivity to salinity.
TAIR Short Description: Na+/H+ antiporter 6
TAIR Aliases: ATNHX6, NHX6
Gene
Length: 2082  
Chromosome Location: Chr5: 8042853-8044934
Organism . Short Name: A. thaliana
TAIR Computational Description: tubulin beta 8;(source:Araport11)
TAIR Curator Summary: beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. The mRNA is cell-to-cell mobile.
TAIR Short Description: tubulin beta 8
TAIR Aliases: TUB8
Gene
Length: 2649  
Chromosome Location: Chr5: 24367142-24369790
Organism . Short Name: A. thaliana
TAIR Computational Description: glycerol-3-phosphate acyltransferase 9;(source:Araport11)
TAIR Curator Summary: Glycerol-3-phosphate acyltransferase localized to the ER. Similar to mammalian cells involved in storage oil formation. ER-localized GPAT enzyme responsible for plant membrane lipid and oil biosynthesis.
TAIR Short Description: glycerol-3-phosphate acyltransferase 9
TAIR Aliases: ATGPAT9, GPAT9
Gene
Length: 1839  
Chromosome Location: Chr5: 24375368-24377206
Organism . Short Name: A. thaliana
TAIR Computational Description: plasma membrane intrinsic protein 2;(source:Araport11)
TAIR Curator Summary: A member of the plasma membrane intrinsic protein subfamily PIP2.When expressed in yeast cells can conduct hydrogen peroxide into those cells. Mutants exhibit longer root hairs.
TAIR Short Description: plasma membrane intrinsic protein 2;4
TAIR Aliases: PIP2;4, PIP2F
Gene
Length: 4305  
Chromosome Location: Chr2: 15972876-15977180
Organism . Short Name: A. thaliana
TAIR Computational Description: Transmembrane amino acid transporter family protein;(source:Araport11)
TAIR Curator Summary: Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning. Shoot supplied ammonium targets AUX1 and inhibits lateral root emergence. The mRNA is cell-to-cell mobile.
TAIR Short Description: Transmembrane amino acid transporter family protein
TAIR Aliases: AtAUX1, AUX1, MAP1, PIR1, WAV5
Gene
Length: 3037  
Chromosome Location: Chr5: 21586219-21589255
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6. Its transcript levels change after inducing MUTE expression in a mute background.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: SPCH
Gene
Length: 2917  
Chromosome Location: Chr1: 20569573-20572489
Organism . Short Name: A. thaliana
TAIR Computational Description: Endomembrane protein 70 protein family;(source:Araport11)
TAIR Curator Summary: Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
TAIR Short Description: Endomembrane protein 70 protein family
TAIR Aliases: AtTMN6, TMN6
Gene
Length: 1661  
Chromosome Location: Chr1: 3118155-3119815
Organism . Short Name: A. thaliana
TAIR Computational Description: RAB GTPase 11C;(source:Araport11)
TAIR Curator Summary: Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.
TAIR Short Description: RAB GTPase 11C
TAIR Aliases: ATRAB-A2A, ATRAB11C, ATRABA2A, RAB-A2A, RAB11c
Gene
Length: 3931  
Chromosome Location: Chr5: 2029793-2033723
Organism . Short Name: A. thaliana
TAIR Computational Description: lipase (DUF620);(source:Araport11)
TAIR Curator Summary: DUF620 domain protein. In xylem cells BRD1 is expressed in the secondary wall pit boundaries. BRD1 interacts with and appears to be necessary to recruit WALLIN to the plasma membrane.
TAIR Short Description: Protein of unknown function (DUF620)
TAIR Aliases: BDR1
Gene
Length: 2790  
Chromosome Location: Chr3: 6328027-6330816
Organism . Short Name: A. thaliana
TAIR Computational Description: aluminum-activated malate transporter 9;(source:Araport11)
TAIR Curator Summary: Belongs to the aluminum-activated malate transporter family. Encodes a vacuolar malate channel. Expressed in all parts of plants. Almost exclusively expressed in mesophyll cells of leaves. The mRNA is cell-to-cell mobile.
TAIR Short Description: aluminum-activated malate transporter 9
TAIR Aliases: ALMT9, AtALMT9
Gene
Length: 3566  
Chromosome Location: Chr5: 2126944-2130509
Organism . Short Name: A. thaliana
TAIR Computational Description: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
TAIR Curator Summary: Encodes an endoplasmic reticulum protein that is involved in the transport of the florigen FT from companion cells to sieve elements, thus affecting FT transport through the phloem to the SAM.
TAIR Short Description: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
TAIR Aliases: FTIP1, MCTP1
Gene
Length: 3054  
Chromosome Location: Chr4: 1137487-1140540
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Basic helix loop helix class transcriptional regulator. Shows ecotype specific effects on temperature dependent salicylic acid accumulation and immunity. Governs the competence of pericycle cells to initiate lateral root primordium formation.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: bHLH059, PFB1, UNE12
Gene
Length: 2659  
Chromosome Location: Chr2: 16591117-16593775
Organism . Short Name: A. thaliana
TAIR Computational Description: ribonuclease 2;(source:Araport11)
TAIR Curator Summary: Encodes the main endoribonuclease activity in plant cells and localizes to the endoplasmic reticulum (ER), ER-derived structures, and vacuoles. It is essential for normal ribosomal RNA recycling. The mRNA is cell-to-cell mobile.
TAIR Short Description: ribonuclease 2
TAIR Aliases: RNS2
Gene
Length: 9082  
Chromosome Location: Chr1: 22011305-22020386
Organism . Short Name: A. thaliana
TAIR Computational Description: aminophospholipid ATPase 3;(source:Araport11)
TAIR Curator Summary: Encodes a phospholipid translocase. Involved in secretory vesicle formation from trans-Golgi in peripheral columella cells at the root tip. Mutants have short primary roots and grow slower. The mRNA is cell-to-cell mobile.
TAIR Short Description: aminophospholipid ATPase 3
TAIR Aliases: ALA3
Gene
Length: 1903  
Chromosome Location: Chr5: 25050152-25052054
Organism . Short Name: A. thaliana
TAIR Computational Description: NAC-domain protein 101;(source:Araport11)
TAIR Curator Summary: Encodes a NAC-domain transcription factor involved in xylem formation. Induces transdifferentiation of various cells into metaxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.
TAIR Short Description: NAC-domain protein 101
TAIR Aliases: ANAC101, NAC101, VND6
Gene
Length: 3696  
Chromosome Location: Chr3: 18417568-18421263
Organism . Short Name: A. thaliana
TAIR Computational Description: Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. The mRNA is cell-to-cell mobile.
TAIR Short Description: Leucine-rich receptor-like protein kinase family protein
TAIR Aliases: BAM2
Gene
Length: 3772  
Chromosome Location: Chr5: 26281642-26285413
Organism . Short Name: A. thaliana
TAIR Computational Description: Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. The mRNA is cell-to-cell mobile.
TAIR Short Description: Leucine-rich receptor-like protein kinase family protein
TAIR Aliases: BAM1
Gene
Length: 2327  
Chromosome Location: Chr3: 11728024-11730350
Organism . Short Name: A. thaliana
TAIR Computational Description: COBRA-like protein 2 precursor;(source:Araport11)
TAIR Curator Summary: During the course of seed coat epidermal cell differentiation, COBRA-LIKE 2 plays a role in cellulose deposition into mucilage secretory cells of Arabidopsis seeds. COBRA-LIKE 2 affects mucilage solubility and cellulosic ray formation.
TAIR Short Description: COBRA-like protein 2 precursor
TAIR Aliases: COBL2
Gene
Length: 6149  
Chromosome Location: Chr5: 2227439-2233587
Organism . Short Name: A. thaliana
TAIR Computational Description: ERECTA-like 2;(source:Araport11)
TAIR Curator Summary: Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.
TAIR Short Description: ERECTA-like 2
TAIR Aliases: ERL2
Gene
Length: 2345  
Chromosome Location: Chr3: 19326035-19328379
Organism . Short Name: A. thaliana
TAIR Computational Description: protein gamma response 1;(source:Araport11)
TAIR Curator Summary: Induced in response to ionizing radiation, shows basal expression in mitotically active cells and high expression in endoreduplicating cells. May be involved in DNA damage-induced growth arrest. Protein sequence contains a PEST destruction box.
TAIR Short Description: gamma response gene 1
TAIR Aliases: ATCOM1, ATGR1, COM1, GR1
Gene
Length: 1588  
Chromosome Location: Chr2: 12640800-12642387
Organism . Short Name: A. thaliana
TAIR Computational Description: Tim10/DDP family zinc finger protein;(source:Araport11)
TAIR Curator Summary: Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Together with AtTIM9, AtTIM10 is non-redundantly essential for maintaining mitochondrial function of early embryo proper cells and endosperm free-nuclei.
TAIR Short Description: Tim10/DDP family zinc finger protein
TAIR Aliases: AtTIM10, TIM10
Gene
Length: 1107  
Chromosome Location: Chr3: 17138476-17139582
Organism . Short Name: A. thaliana
TAIR Computational Description: Tim10/DDP family zinc finger protein;(source:Araport11)
TAIR Curator Summary: Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Together with AtTIM10, AtTIM9 is non-redundantly essential for maintaining mitochondrial function of early embryo proper cells and endosperm free-nuclei.
TAIR Short Description: Tim10/DDP family zinc finger protein
TAIR Aliases: AtTIM9, emb2474, TIM9
Gene  
Length: 1639  
Chromosome Location: Chr1: 24924774-24926412
Organism . Short Name: A. thaliana
TAIR Computational Description: NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
TAIR Curator Summary: Its expression is enriched in non-root hair cells (compared to root hair cells) and this enrichment is associated with increase in the transcription-associated mark trimethylation of H3 lysine 4 (H3K4me3) and decrease in the Polycomb silencing-associated mark trimethylation of H3 lysine 27 (H3K27me3) in non-root hair cells relative to root-hair cells. Protein sequence is similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase. The mRNA is cell-to-cell mobile.
TAIR Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Gene
Length: 6311  
Chromosome Location: Chr5: 24996129-25002439
Organism . Short Name: A. thaliana
TAIR Computational Description: ERECTA-like 1;(source:Araport11)
TAIR Curator Summary: Encodes a receptor-like kinase that, together with ER and ERL2 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. Along with erl2 functionally compensates for loss of erecta during integument development. Its transcript levels change after inducing MUTE expression in a mute background.
TAIR Short Description: ERECTA-like 1
TAIR Aliases: ERL1
Gene
Length: 1784  
Chromosome Location: Chr1: 26343275-26345058
Organism . Short Name: A. thaliana
TAIR Computational Description: Pectin lyase-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers.
TAIR Short Description: Pectin lyase-like superfamily protein
TAIR Aliases: ATPPME1, PPME1
Gene
Length: 3813  
Chromosome Location: Chr5: 22779614-22783426
Organism . Short Name: A. thaliana
TAIR Computational Description: WRKY DNA-binding protein 2;(source:Araport11)
TAIR Curator Summary: Encodes WRKY transcription factor 2, a zinc-finger protein. In wrky2 mutants, egg cells polarize normally but zygotes fail to reestablish polar organelle positioning from a transient symmetric state, resulting in equal cell division and distorted embryo development.
TAIR Short Description: WRKY DNA-binding protein 2
TAIR Aliases: ATWRKY2, WRKY2
Gene
Length: 3462  
Chromosome Location: Chr1: 8180189-8183650
Organism . Short Name: A. thaliana
TAIR Computational Description: Auxin efflux carrier family protein;(source:Araport11)
TAIR Curator Summary: Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.
TAIR Short Description: Auxin efflux carrier family protein
TAIR Aliases: ATPIN7, PIN7
Gene
Length: 2878  
Chromosome Location: Chr4: 12837353-12840230
Organism . Short Name: A. thaliana
TAIR Computational Description: tapetum determinant 1;(source:Araport11)
TAIR Curator Summary: Encodes a novel small protein which is similar to proteins of unknown function from other plant species. TPD1 is involved in cell specification during anther and pollen development. Identified in a screen for male steriles. Mutants lack tapetal cells and have an increased number of microsporocytes. Expressed in flower buds, leaves and young seedlings. In anthers, TPD1 is expressed throughout pollen development in parietal cells and sporocytes. Physically interacts with the LRR kinase EMS1 and that interaction results in phosphorylation of TPD1.
TAIR Short Description: tapetum determinant 1
TAIR Aliases: TPD1
Gene
Length: 1677  
Chromosome Location: Chr3: 18943135-18944811
Organism . Short Name: A. thaliana
TAIR Computational Description: Peroxidase superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a class III peroxidase family protein that functions as a mucilage extrusion factor. Its polarized and developmental stage-dependent secretion plays a role in cell wall modification of the cells in the second layer of the outer integument.
TAIR Short Description: Peroxidase superfamily protein
TAIR Aliases: PER36, PRX36
Gene
Length: 4112  
Chromosome Location: Chr1: 7734661-7738772
Organism . Short Name: A. thaliana
TAIR Computational Description: phosphatidylinositol-4-phosphate 5-kinase 1;(source:Araport11)
TAIR Curator Summary: Type I phosphatidylinositol-4-phosphate 5-kinase. Preferentially phosphorylates PtdIns4P. Induced by water stress and abscisic acid in Arabidopsis thaliana. Expressed in procambial cells of leaves, flowers and roots. A N-terminal Membrane Occupation and Recognition Nexus (MORN)affects enzyme activity and distribution.
TAIR Short Description: phosphatidylinositol-4-phosphate 5-kinase 1
TAIR Aliases: ATPIP5K1, ATPIPK1, PIP5K1
Gene
Length: 3290  
Chromosome Location: Chr1: 27074702-27077991
Organism . Short Name: A. thaliana
TAIR Computational Description: vascular related NAC-domain protein 7;(source:Araport11)
TAIR Curator Summary: Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.
TAIR Short Description: vascular related NAC-domain protein 7
TAIR Aliases: ANAC030, VND7
Gene
Length: 3143  
Chromosome Location: Chr3: 4521532-4524674
Organism . Short Name: A. thaliana
TAIR Computational Description: transmembrane nine 7;(source:Araport11)
TAIR Curator Summary: Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. Overexpression of this protein in yeast alters copper and zinc homeostasis.
TAIR Short Description: transmembrane nine 7
TAIR Aliases: AtTMN7, TMN7
Gene
Length: 2236  
Chromosome Location: Chr4: 12566631-12568866
Organism . Short Name: A. thaliana
TAIR Computational Description: acyl-CoA-binding domain 3;(source:Araport11)
TAIR Curator Summary: acyl-CoA-binding protein ACBP3. Localized extracellularly in transiently expressed tobacco BY-2 cells and onion epidermal cells. Binds arachidonyl-CoA with high affinity. Microarray data shows up-regulation of many biotic- and abiotic-stress-related genes in an ACBP3 OE-1 in comparison to wild type.
TAIR Short Description: acyl-CoA-binding domain 3
TAIR Aliases: ACBP3
Gene
Length: 3043  
Chromosome Location: Chr4: 16171681-16174723
Organism . Short Name: A. thaliana
TAIR Computational Description: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes an L,L-diaminopimelate aminotransferase. Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.
TAIR Short Description: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
TAIR Aliases: AGD2
Gene
Length: 2305  
Chromosome Location: Chr4: 1321758-1324062
Organism . Short Name: A. thaliana
TAIR Computational Description: Mitochondrial transcription termination factor family protein;(source:Araport11)
TAIR Curator Summary: Encodes BELAYA SMERT (BSM), a plastid-localized protein homologous to mitochondrial transcription termination factors (mTERF) found in animal. Mutant bsm cells are albino, are compromised in growth, and suffer defects in global plastidic gene expression. The mRNA is cell-to-cell mobile.
TAIR Short Description: Mitochondrial transcription termination factor family protein
TAIR Aliases: BSM, RUG2
Gene
Length: 657  
Chromosome Location: Chr5: 26848-27504
Organism . Short Name: A. thaliana
TAIR Computational Description: Glycosyl hydrolase family 35 protein;(source:Araport11)
TAIR Curator Summary: Encodes a small ER-localized protein that is strongly expressed in seeds and regulates both embryo development and accumulation of storage compounds. At the cellular level, TWS1 is responsible for cuticle deposition on epidermal cells and organization of the endomembrane system.
TAIR Short Description: Glycosyl hydrolase family 35 protein
TAIR Aliases: TWS1
Gene
Length: 5061  
Chromosome Location: Chr1: 3659204-3664264
Organism . Short Name: A. thaliana
TAIR Computational Description: transmembrane nine 1;(source:Araport11)
TAIR Curator Summary: Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. Functions in the deposition of rhamnogalacturonan II and I for cell growth.
TAIR Short Description: transmembrane nine 1
TAIR Aliases: AtTMN1, EMP12, TMN1
Gene
Length: 3786  
Chromosome Location: Chr2: 11650358-11654143
Organism . Short Name: A. thaliana
TAIR Computational Description: transcription factor-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.
TAIR Short Description: transcription factor-related
TAIR Aliases: LHW
Gene
Length: 1583  
Chromosome Location: Chr2: 12262013-12263595
Organism . Short Name: A. thaliana
TAIR Computational Description: Homeodomain-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a homeodomain containing protein that regulates lateral axis-dependent development of Arabidopsis flowers and is required for cell proliferation. It is expressed in a restricted number of L1 cells at the lateral regions of flower primordia, floral organ primordia, and young leaf primordia.
TAIR Short Description: Homeodomain-like superfamily protein
TAIR Aliases: PRS, PRS1, WOX3
Gene
Length: 1834  
Chromosome Location: Chr2: 17601872-17603705
Organism . Short Name: A. thaliana
TAIR Computational Description: uv-b-insensitive 4;(source:Araport11)
TAIR Curator Summary: Encodes a novel plant-specific protein of unknown function. The UVI4 gene is expressed mainly in actively dividing cells. The hypocotyl cells in mutant seedlings undergo one extra round of endoreduplication. The uvi4 mutation also promoted the progression of endo-reduplication during leaf development.
TAIR Short Description: uv-b-insensitive 4
TAIR Aliases: PYM, UVI4
Gene
Length: 1518  
Chromosome Location: Chr3: 1225919-1227436
Organism . Short Name: A. thaliana
TAIR Computational Description: rubisco accumulation factor-like protein;(source:Araport11)
TAIR Curator Summary: Encodes an ancillary chaperone protein that functions in Rubisco biogenesis. RAF1 dimers function in the assembly of the large subunit of Rubisco. Co-expression of RAF1 and rbcL in tobacco cells results in increased photosynthesis and plant growth. The mRNA is cell-to-cell mobile.
TAIR Short Description: NULL
TAIR Aliases: RAF1
Gene
Length: 2911  
Chromosome Location: Chr1: 29940803-29943713
Organism . Short Name: A. thaliana
TAIR Computational Description: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
TAIR Curator Summary: NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.
TAIR Short Description: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TAIR Aliases: ANAC033, SMB, URP7
Gene
Length: 3240  
Chromosome Location: Chr5: 17618740-17621979
Organism . Short Name: A. thaliana
TAIR Computational Description: Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes an essential protein of unknown function.OPNR is expressed in rapidly dividing cells and may function in cell cycle progression. It is expressed in mitochondria and the nuclear envelope. Loss of function results in embryo lethality and reduced transmission through the female.
TAIR Short Description: Pentatricopeptide repeat (PPR) superfamily protein
TAIR Aliases: OPNR
Gene
Length: 11313  
Chromosome Location: Chr3: 4411688-4423000
Organism . Short Name: A. thaliana
TAIR Computational Description: mitogen-activated protein kinase kinase kinase 7;(source:Araport11)
TAIR Curator Summary: MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules.
TAIR Short Description: mitogen-activated protein kinase kinase kinase 7
TAIR Aliases: MAP3KE1, MAPKKK7
Gene
Length: 5276  
Chromosome Location: Chr3: 20624020-20629295
Organism . Short Name: A. thaliana
TAIR Computational Description: delta 1-pyrroline-5-carboxylate synthase 2;(source:Araport11)
TAIR Curator Summary: encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Knock-out mutations in P5CS2 are embryo-lethal. P5CS2 appears to be present in different cells and/or different subcellular locations from P5CS1 in a tissue-dependent manner. Mutants are defective in pollen development.
TAIR Short Description: delta 1-pyrroline-5-carboxylate synthase 2
TAIR Aliases: P5CS2
Gene
Length: 6277  
Chromosome Location: Chr3: 22447245-22453521
Organism . Short Name: A. thaliana
TAIR Computational Description: ARM repeat superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.
TAIR Short Description: ARM repeat superfamily protein
TAIR Aliases: CHO, EMB133, TFC D, TTN1
Gene
Length: 1502  
Chromosome Location: Chr1: 4773434-4774935
Organism . Short Name: A. thaliana
TAIR Computational Description: eukaryotic elongation factor 5A-1;(source:Araport11)
TAIR Curator Summary: Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.
TAIR Short Description: eukaryotic elongation factor 5A-1
TAIR Aliases: ATELF5A-1, EIF-5A, EIF5A, ELF5A-1
Gene
Length: 2777  
Chromosome Location: Chr1: 22753611-22756387
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a transcriptional activator that regulates the expression of genes by binding to their GCG- or E-boxes to mediate physiological responses, including proline biosynthesis and ROS scavenging pathways, to enhance stress tolerance. Governs the competence of pericycle cells to initiate lateral root primordium formation.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: AtbHLH112, PFA4
Gene
Length: 4215  
Chromosome Location: Chr4: 9876172-9880386
Organism . Short Name: A. thaliana
TAIR Computational Description: trehalose phosphatase/synthase 5;(source:Araport11)
TAIR Curator Summary: Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. Phosphorylated TPS5 extracted from Arabidopsis cells binds directly to 14-3-3 isoforms. The mRNA is cell-to-cell mobile.
TAIR Short Description: trehalose phosphatase/synthase 5
TAIR Aliases: ATTPS5, TPS5
Gene
Length: 2478  
Chromosome Location: Chr5: 7070491-7072968
Organism . Short Name: A. thaliana
TAIR Computational Description: RAS associated with diabetes protein 51;(source:Araport11)
TAIR Curator Summary: Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation. Also involved in defense gene transcription during plant immune responses.
TAIR Short Description: RAS associated with diabetes protein 51
TAIR Aliases: ATRAD51, RAD51
Ontology Term Synonym
Name: killing of inflammatory cells
Type: synonym
Ontology Term Synonym
Name: apoptosis of inflammatory cells
Type: synonym
Ontology Term Synonym
Name: apoptosis of neuronal cells
Type: synonym
Ontology Term Synonym
Name: apoptosis of B cells
Type: synonym
Ontology Term Synonym
Name: killing of endothelial cells
Type: synonym
Ontology Term Synonym
Name: apoptosis of endothelial cells
Type: synonym
Ontology Term Synonym
Name: apoptosis of mast cells
Type: synonym
Ontology Term Synonym
Name: apoptosis of myeloid cells
Type: synonym
Ontology Term Synonym
Name: apoptosis of nurse cells
Type: synonym
Ontology Term Synonym
Name: apoptosis of glial cells
Type: synonym
Gene
Length: 3297  
Chromosome Location: Chr2: 17304130-17307426
Organism . Short Name: A. thaliana
TAIR Computational Description: WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein;(source:Araport11)
TAIR Curator Summary: Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.
TAIR Short Description: WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
TAIR Aliases: AtPRP4, AtSAP60, EMB2776, LIS, PRP4
Gene
Length: 2258  
Chromosome Location: Chr3: 19803473-19805730
Organism . Short Name: A. thaliana
TAIR Computational Description: plasma membrane intrinsic protein 2A;(source:Araport11)
TAIR Curator Summary: a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev. When expressed in yeast cells can conduct hydrogen peroxide into those cells.
TAIR Short Description: plasma membrane intrinsic protein 2A
TAIR Aliases: AtPIP2;1, PIP2, PIP2;1, PIP2A