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Search results 1 to 100 out of 10402 for Single Nucleotide Polymorphism

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Type Details Score
SO Term
Description: SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater.
Ontology Term Synonym
Name: single nucleotide polymorphism
Type: synonym
GeneRIF (Gene Reference into Function)
Annotation: The causative single nucleotide polymorphism changing a splicing site in ARMADILLO REPEAT-CONTAINING KINESIN1.
Organism: A. thaliana
Gene: MRH2
PubMed Id: 25248719
Ontology Term Synonym
Name: single amino-acid polymorphism
Type: synonym
Interaction Term
SO Term
Description: A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT.
Ontology Term Synonym
Name: multiple nucleotide polymorphism
Type: synonym
Ontology Term Synonym
Name: disease single amino acid polymorphism
Type: synonym
Gene
Length: 2845  
Chromosome Location: Chr1: 4323533-4326377
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA processing FACTOR;(source:Araport11)
TAIR Curator Summary: Encodes RNA PROCESSING FACTOR 1 (RPF1), a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5’-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5′-end, contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler.
TAIR Short Description: ATP binding;nucleic acid binding;helicases
TAIR Aliases: RPF1
SO Term
Description: SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist.
Ontology Term Synonym
Name: single nucleotide variant
Type: synonym
Gene  
Length: 3206  
Chromosome Location: Chr3: 5316916-5320121
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Short Description: Single hybrid motif superfamily protein
TAIR Aliases: BADC3, BLP2
Gene  
Length: 2681  
Chromosome Location: Chr1: 19614931-19617611
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Short Description: Single hybrid motif superfamily protein
TAIR Aliases: BADC2, BLP1
Gene    
Length: 1865  
Chromosome Location: Chr1: 28522554-28524418
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Short Description: Single hybrid motif superfamily protein
Gene    
Length: 1768  
Chromosome Location: Chr2: 14805639-14807406
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Short Description: Single hybrid motif superfamily protein
Gene    
Length: 1096  
Chromosome Location: Chr1: 11739304-11740399
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Short Description: Single hybrid motif superfamily protein
Interaction Term
Publication
First Author: Racila DM
Title: Homozygous single nucleotide polymorphism of the complement C1QA gene is associated with decreased levels of C1q in patients with subacute cutaneous lupus erythematosus.
Year: 2003
Journal: Lupus
Volume: 12
Pages: 124-32
Gene
Length: 2785  
Chromosome Location: Chr2: 17474527-17477311
Organism . Short Name: A. thaliana
TAIR Computational Description: guanylate kinase 1;(source:Araport11)
TAIR Curator Summary: Guanylate kinase. Involved in nucleotide metabolism.
TAIR Short Description: guanylate kinase 1
TAIR Aliases: AGK1, GK-1
Gene  
Length: 2688  
Chromosome Location: Chr2: 158183-160870
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide binding protein;(source:Araport11)
TAIR Short Description: nucleotide binding
TAIR Aliases: AIP1-1
Gene    
Length: 560  
Chromosome Location: Chr1: 4366577-4367136
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide binding protein;(source:Araport11)
TAIR Short Description: nucleotide binding
Publication
First Author: West MA
Title: High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis.
Year: 2006
Journal: Genome Res
Volume: 16
Pages: 787-95
Gene
Length: 3528  
Chromosome Location: Chr3: 6045002-6048529
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 19;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide gated channel 19
TAIR Aliases: ATCNGC19, CNGC19
Gene
Length: 3693  
Chromosome Location: Chr2: 10456879-10460571
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-gated channel 14;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide-gated channel 14
TAIR Aliases: ATCNGC14, CNGC14
Gene
Length: 3201  
Chromosome Location: Chr2: 12049443-12052643
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-gated channel 15;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide-gated channel 15
TAIR Aliases: ATCNGC15, CNGC15
Gene
Length: 3004  
Chromosome Location: Chr3: 17721137-17724140
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-gated channel 16;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide-gated channel 16
TAIR Aliases: ATCNGC16, CNGC16
Gene
Length: 3389  
Chromosome Location: Chr4: 434217-437605
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-gated channel 13;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide-gated channel 13
TAIR Aliases: ATCNGC13, CNGC13
Gene
Length: 3655  
Chromosome Location: Chr1: 132270-135924
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 10;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide gated channel 10
TAIR Aliases: ACBK1, ATCNGC10, CNGC10
Gene
Length: 3326  
Chromosome Location: Chr4: 14854694-14858019
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-gated channel 17;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide-gated channel 17
TAIR Aliases: ATCNGC17, CNGC17
Gene
Length: 3522  
Chromosome Location: Chr4: 14926834-14930355
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 9;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide gated channel 9
TAIR Aliases: ATCNGC9, CNGC9
Gene
Length: 2682  
Chromosome Location: Chr4: 18315545-18318226
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide sugar transporter-KT 1;(source:Araport11)
TAIR Curator Summary: Encodes a golgi localized nucleotide sugar transporter.
TAIR Short Description: nucleotide sugar transporter-KT 1
TAIR Aliases: ATNST-KT1, NST-K1, URGT4
Gene
Length: 3309  
Chromosome Location: Chr5: 21537721-21541029
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 1;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide gated channel 1
TAIR Aliases: ATCNGC1, CNGC1
Publication
First Author: Du J
Title: Unique nucleotide polymorphism of ankyrin gene cluster in Arabidopsis.
Year: 2007
Journal: J Genet
Volume: 86
Pages: 27-35
GeneRIF (Gene Reference into Function)
Annotation: the RPS5 polymorphism may not be maintained through a tightly coupled interaction involving a single coevolved R gene and effector pair; more likely, the stable polymorphism is maintained through complex and diffuse community-wide interactions
Organism: A. thaliana
Gene: RPS5
PubMed Id: 25043057
Gene  
Length: 3453  
Chromosome Location: Chr2: 2352145-2355597
Organism . Short Name: A. thaliana
TAIR Computational Description: F-box/LRR protein;(source:Araport11)
TAIR Curator Summary: Contributes to UV tolerance through nucleotide excision repair.
TAIR Aliases: RAD7a
Gene
Length: 3058  
Chromosome Location: Chr4: 8845812-8848869
Organism . Short Name: A. thaliana
TAIR Computational Description: F-box/RNI-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Contributes to UV tolerance through nucleotide excision repair.
TAIR Short Description: F-box/RNI-like superfamily protein
TAIR Aliases: RAD7b
Gene
Length: 2362  
Chromosome Location: Chr5: 7238174-7240535
Organism . Short Name: A. thaliana
TAIR Computational Description: RNI-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Contributes to UV tolerance through nucleotide excision repair.
TAIR Short Description: RNI-like superfamily protein
TAIR Aliases: RAD7c
Gene
Length: 5902  
Chromosome Location: Chr1: 20932451-20938352
Organism . Short Name: A. thaliana
TAIR Computational Description: histone acetyltransferase of the CBP family 4;(source:Araport11)
TAIR Curator Summary: HAC4 is most likely to be an expressed pseudogene that lacks HAT function. there is a single nucleotide deletion in both the HAC4 genomic and cDNA sequences relative to its homologs. The resulting frameshift within the open reading frame causes a stop codon to occur within the predicted acetyltransferase catalytic domain.
TAIR Short Description: histone acetyltransferase of the CBP family 4
TAIR Aliases: HAC04, HAC4, HAC6, HAG04, HAG4
Gene
Length: 2715  
Chromosome Location: Chr1: 3750066-3752780
Organism . Short Name: A. thaliana
TAIR Computational Description: bifunctional nuclease i;(source:Araport11)
TAIR Curator Summary: Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).
TAIR Short Description: bifunctional nuclease i
TAIR Aliases: BFN1, ENDO1
Gene
Length: 2704  
Chromosome Location: Chr3: 1479339-1482042
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide repair protein;(source:Araport11)
TAIR Curator Summary: encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10.
TAIR Short Description: nucleotide repair protein, putative
TAIR Aliases: ERCC1, UVR7
Gene
Length: 3068  
Chromosome Location: Chr1: 30191538-30194605
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide transporter 1;(source:Araport11)
TAIR Curator Summary: Encodes an ATP/ADP transporter. The mRNA is cell-to-cell mobile.
TAIR Short Description: nucleotide transporter 1
TAIR Aliases: ATNTT1, NTT1
Gene  
Length: 3800  
Chromosome Location: Chr3: 19277594-19281393
Organism . Short Name: A. thaliana
TAIR Computational Description: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary: Contains single CCCH domain.
TAIR Short Description: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Gene  
Length: 3306  
Chromosome Location: Chr4: 14061403-14064708
Organism . Short Name: A. thaliana
TAIR Computational Description: WD repeat and SOF domain-containing protein 1;(source:Araport11)
TAIR Curator Summary: This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase
TAIR Short Description: nucleotide binding;protein binding
Gene
Length: 2146  
Chromosome Location: Chr2: 7180142-7182287
Organism . Short Name: A. thaliana
TAIR Computational Description: GLN phosphoribosyl pyrophosphate amidotransferase 1;(source:Araport11)
TAIR Curator Summary: Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis
TAIR Short Description: GLN phosphoribosyl pyrophosphate amidotransferase 1
TAIR Aliases: ASE1, ATASE, ATASE1
Gene
Length: 3442  
Chromosome Location: Chr4: 8244053-8247494
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Orphan kinesin with processive motility on single microtubules.
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: PAKRP2
Gene
Length: 2165  
Chromosome Location: Chr4: 15638353-15640517
Organism . Short Name: A. thaliana
TAIR Computational Description: Mitochondrial substrate carrier family protein;(source:Araport11)
TAIR Curator Summary: Encodes a plastidial nucleotide uniport carrier protein required to export newly synthesized adenylates into the cytosol.
TAIR Short Description: Mitochondrial substrate carrier family protein
TAIR Aliases: ATBT1, BR1, EMB104, EMB42, SHS1
GeneRIF (Gene Reference into Function)
Annotation: a single natural intronic polymorphism in one haplotype affects FLC expression and thus flowering by specifically changing splicing of the FLC antisense transcript COOLAIR.
Organism: A. thaliana
Gene: FLC
PubMed Id: 25805848
Gene
Length: 1711  
Chromosome Location: Chr1: 26502909-26504619
Organism . Short Name: A. thaliana
TAIR Computational Description: equilibrative nucleotide transporter 1;(source:Araport11)
TAIR Curator Summary: encodes an adenosine transporter that catalyze a proton-dependent adenosine transport. The mRNA is cell-to-cell mobile.
TAIR Short Description: equilibrative nucleotide transporter 1
TAIR Aliases: ENT1, ENT1,AT
Gene
Length: 2888  
Chromosome Location: Chr4: 477141-480028
Organism . Short Name: A. thaliana
TAIR Computational Description: adenine nucleotide transporter 1;(source:Araport11)
TAIR Curator Summary: Adenine nucleotide transporter. Located in mitochondrion. Expressed in a broad range of tissues, but predominantly in root tips. Loss of function mutants exhibit reduced root growth and respiration.
TAIR Short Description: adenine nucleotide transporter 1
TAIR Aliases: ADNT1
Gene
Length: 2003  
Chromosome Location: Chr5: 20734136-20736138
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide binding protein 35;(source:Araport11)
TAIR Curator Summary: Highly similar to Saccharomyces cerevisiae NBP35, locus YGL091C. Cytosolic protein that homodimerizes and can assemble both 4Fe-4S - type and 2Fe-2S - type clusters on its amino terminal and carboxy therminal respectively. Null mutants are embryo lethal.
TAIR Short Description: nucleotide binding protein 35
TAIR Aliases: ATNBP35, NBP35
Gene
Length: 2005  
Chromosome Location: Chr3: 1505831-1507835
Organism . Short Name: A. thaliana
TAIR Computational Description: peroxisomal adenine nucleotide carrier 1;(source:Araport11)
TAIR Curator Summary: encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.
TAIR Short Description: peroxisomal adenine nucleotide carrier 1
TAIR Aliases: AtPNC1, PNC1
Gene
Length: 2071  
Chromosome Location: Chr5: 9714348-9716418
Organism . Short Name: A. thaliana
TAIR Computational Description: peroxisomal adenine nucleotide carrier 2;(source:Araport11)
TAIR Curator Summary: encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.
TAIR Short Description: peroxisomal adenine nucleotide carrier 2
TAIR Aliases: AtPNC2, PNC2
Gene
Length: 3059  
Chromosome Location: Chr5: 25283063-25286121
Organism . Short Name: A. thaliana
TAIR Computational Description: Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
TAIR Curator Summary: Nucleotide binding leucine rich repeat protein of the C-NB-LRR (CNL) type. Involved in TOPP4 mediated immune response.
TAIR Short Description: Disease resistance protein (CC-NBS-LRR class) family
TAIR Aliases: SUT1
Publication
First Author: Kamiya T
Title: Nucleotide polymorphism at the Atmyb2 locus of the wild plant Arabidopsis thaliana.
Year: 2002
Journal: Genet Res
Volume: 80
Pages: 89-98
Gene    
Length: 2204  
Chromosome Location: Chr2: 14789245-14791448
Organism . Short Name: A. thaliana
TAIR Computational Description: ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein;(source:Araport11)
TAIR Short Description: nucleotide binding;ATP binding;aminoacyl-tRNA ligases
Gene
Length: 1481  
Chromosome Location: Chr1: 4747186-4748666
Organism . Short Name: A. thaliana
TAIR Computational Description: KTI12-like, chromatin associated protein;(source:Araport11)
TAIR Curator Summary: Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots. Mutants also have no ncm5U (5-carbamoylmethyluridine).
TAIR Short Description: calmodulin binding;purine nucleotide binding
TAIR Aliases: AtKTI12, DRL1
Gene    
Length: 3838  
Chromosome Location: Chr1: 7462327-7466164
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleic acid/nucleotide binding protein;(source:Araport11)
TAIR Short Description: nucleotide binding;nucleic acid binding
Gene
Length: 3494  
Chromosome Location: Chr2: 19057999-19061492
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 3;(source:Araport11)
TAIR Curator Summary: Encodes a cyclic nucleotide gated channel, downstream component of the signaling pathways leading to hypersensitive response (HR) resistance.
TAIR Short Description: cyclic nucleotide gated channel 3
TAIR Aliases: ATCNGC3, CNGC3, CNGC3.C
Gene  
Length: 3725  
Chromosome Location: Chr2: 19625459-19629183
Organism . Short Name: A. thaliana
TAIR Computational Description: trafficking protein particle complex subunit-like protein;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Aliases: TRAPPC13
Gene
Length: 1657  
Chromosome Location: Chr3: 1387175-1388831
Organism . Short Name: A. thaliana
TAIR Computational Description: Transport protein particle (TRAPP) component;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Transport protein particle (TRAPP) component
TAIR Aliases: TRAPPC6
Gene
Length: 3862  
Chromosome Location: Chr3: 6048814-6052675
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-binding transporter 1;(source:Araport11)
TAIR Curator Summary: cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels. The mRNA is cell-to-cell mobile.
TAIR Short Description: cyclic nucleotide-binding transporter 1
TAIR Aliases: ATCNGC20, CNBT1, CNGC20
Gene
Length: 2224  
Chromosome Location: Chr1: 30270445-30272668
Organism . Short Name: A. thaliana
TAIR Computational Description: SNARE-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: SNARE-like superfamily protein
TAIR Aliases: TRAPPC2
Gene
Length: 1388  
Chromosome Location: Chr2: 9000450-9001837
Organism . Short Name: A. thaliana
TAIR Computational Description: SNARE-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: SNARE-like superfamily protein
TAIR Aliases: tTRAPPC2(L)
Gene
Length: 2965  
Chromosome Location: Chr1: 6833669-6836633
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 8;(source:Araport11)
TAIR Curator Summary: Encodes a member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.
TAIR Short Description: cyclic nucleotide gated channel 8
TAIR Aliases: ATCNGC8, CNGC8
Gene
Length: 2115  
Chromosome Location: Chr4: 18475946-18478060
Organism . Short Name: A. thaliana
TAIR Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
TAIR Aliases: TRAPPC12
Gene
Length: 988  
Chromosome Location: Chr5: 469298-470285
Organism . Short Name: A. thaliana
TAIR Computational Description: SNARE-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: SNARE-like superfamily protein
TAIR Aliases: TRAPPC4
Gene
Length: 8562  
Chromosome Location: Chr5: 5323133-5331694
Organism . Short Name: A. thaliana
TAIR Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
TAIR Aliases: TRAPPC8, TRS85
Gene
Length: 2244  
Chromosome Location: Chr5: 22241478-22243721
Organism . Short Name: A. thaliana
TAIR Computational Description: Transport protein particle (TRAPP) component;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Transport protein particle (TRAPP) component
TAIR Aliases: TRAPPC3
Gene
Length: 1844  
Chromosome Location: Chr5: 23486777-23488620
Organism . Short Name: A. thaliana
TAIR Computational Description: Transport protein particle (TRAPP) component;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Transport protein particle (TRAPP) component
TAIR Aliases: TRAPPC5
Gene
Length: 2529  
Chromosome Location: Chr3: 5466246-5468774
Organism . Short Name: A. thaliana
TAIR Computational Description: RHO guanyl-nucleotide exchange factor 13;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
TAIR Short Description: RHO guanyl-nucleotide exchange factor 13
TAIR Aliases: ATROPGEF13, PIRF2, ROPGEF13
Gene
Length: 2504  
Chromosome Location: Chr3: 8980400-8982903
Organism . Short Name: A. thaliana
TAIR Computational Description: RHO guanyl-nucleotide exchange factor 8;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
TAIR Short Description: RHO guanyl-nucleotide exchange factor 8
TAIR Aliases: ATROPGEF8, ROPGEF8
Gene
Length: 2575  
Chromosome Location: Chr1: 19455495-19458069
Organism . Short Name: A. thaliana
TAIR Computational Description: rop guanine nucleotide exchange factor-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .
TAIR Short Description: RHO guanyl-nucleotide exchange factor 11
TAIR Aliases: ATROPGEF11, PIRF1, ROPGEF11
Gene
Length: 2691  
Chromosome Location: Chr3: 20648794-20651484
Organism . Short Name: A. thaliana
TAIR Computational Description: ROP (rho of plants) guanine nucleotide exchange factor 6;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
TAIR Short Description: ROP (rho of plants) guanine nucleotide exchange factor 6
TAIR Aliases: ATROPGEF6, ROPGEF6
Gene
Length: 2698  
Chromosome Location: Chr4: 211000-213697
Organism . Short Name: A. thaliana
TAIR Computational Description: RHO guanyl-nucleotide exchange factor 3;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
TAIR Short Description: RHO guanyl-nucleotide exchange factor 3
TAIR Aliases: ATROPGEF3, ROPGEF3
Gene
Length: 2361  
Chromosome Location: Chr1: 259307-261667
Organism . Short Name: A. thaliana
TAIR Computational Description: RHO guanyl-nucleotide exchange factor 2;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
TAIR Short Description: RHO guanyl-nucleotide exchange factor 2
TAIR Aliases: ATROPGEF2, ROPGEF2
Gene
Length: 4541  
Chromosome Location: Chr1: 11326251-11330791
Organism . Short Name: A. thaliana
TAIR Computational Description: RHO guanyl-nucleotide exchange factor 14;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
TAIR Short Description: RHO guanyl-nucleotide exchange factor 14
TAIR Aliases: ATROPGEF14, ROPGEF14
Gene
Length: 2673  
Chromosome Location: Chr4: 7679950-7682622
Organism . Short Name: A. thaliana
TAIR Computational Description: RHO guanyl-nucleotide exchange factor 9;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
TAIR Short Description: RHO guanyl-nucleotide exchange factor 9
TAIR Aliases: ATROPGEF9, ROPGEF9
Gene
Length: 2756  
Chromosome Location: Chr5: 1785845-1788600
Organism . Short Name: A. thaliana
TAIR Computational Description: ROP guanine nucleotide exchange factor 5;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
TAIR Short Description: ROP guanine nucleotide exchange factor 5
TAIR Aliases: ATROPGEF5, ROPGEF5
Gene
Length: 3597  
Chromosome Location: Chr5: 6602910-6606506
Organism . Short Name: A. thaliana
TAIR Computational Description: ROP uanine nucleotide exchange factor 10;(source:Araport11)
TAIR Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
TAIR Short Description: ROP uanine nucleotide exchange factor 10
TAIR Aliases: ATROPGEF10, GEF10, ROPGEF10
Gene
Length: 1274  
Chromosome Location: Chr2: 17507343-17508616
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger protein 8;(source:Araport11)
TAIR Curator Summary: Encodes a zinc finger protein containing only a single zinc finger.
TAIR Short Description: zinc finger protein 8
TAIR Aliases: ZFP8
Gene
Length: 2288  
Chromosome Location: Chr1: 24619830-24622117
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger protein 4;(source:Araport11)
TAIR Curator Summary: Encodes a zinc finger protein containing only a single zinc finger.
TAIR Short Description: zinc finger protein 4
TAIR Aliases: ZFP4
Gene
Length: 1424  
Chromosome Location: Chr1: 8725789-8727212
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger protein 7;(source:Araport11)
TAIR Curator Summary: Encodes a zinc finger protein containing only a single zinc finger.
TAIR Short Description: zinc finger protein 7
TAIR Aliases: ZFP7
Gene
Length: 1228  
Chromosome Location: Chr5: 8687188-8688415
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger protein 3;(source:Araport11)
TAIR Curator Summary: Encodes a zinc finger protein containing only a single zinc finger.
TAIR Short Description: zinc finger protein 3
TAIR Aliases: ZFP3
Gene
Length: 1125  
Chromosome Location: Chr5: 23295652-23296776
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger protein 2;(source:Araport11)
TAIR Curator Summary: Encodes a zinc finger protein containing only a single zinc finger.
TAIR Short Description: zinc finger protein 2
TAIR Aliases: ATZFP2, ZFP2
Gene
Length: 3250  
Chromosome Location: Chr2: 19061688-19064937
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-gated channels;(source:Araport11)
TAIR Curator Summary: Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen. The mRNA is cell-to-cell mobile.
TAIR Short Description: cyclic nucleotide-gated channels
TAIR Aliases: ATCNGC11, CNGC11
Gene
Length: 3898  
Chromosome Location: Chr5: 4460840-4464737
Organism . Short Name: A. thaliana
TAIR Computational Description: telomeric DNA binding protein 1;(source:Araport11)
TAIR Curator Summary: Encodes a protein that specifically binds plant telomeric DNA repeats. It has a single Myb telomeric DNA-binding (SANT) domain in C-terminus that prefers the sequence TTTAGGG. Single Myb Histone (SMH) gene family member.
TAIR Short Description: telomeric DNA binding protein 1
TAIR Aliases: ATBP-1, ATBP1, ATTBP1, HPPBF-1, TBP1
Gene  
Length: 2665  
Chromosome Location: Chr1: 27380260-27382924
Organism . Short Name: A. thaliana
TAIR Computational Description: Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
TAIR Curator Summary: Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.
TAIR Short Description: Homeodomain-like/winged-helix DNA-binding family protein
Gene  
Length: 2930  
Chromosome Location: Chr1: 6024636-6027565
Organism . Short Name: A. thaliana
TAIR Computational Description: Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
TAIR Curator Summary: Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.
TAIR Short Description: Homeodomain-like/winged-helix DNA-binding family protein
Gene
Length: 3060  
Chromosome Location: Chr1: 5491133-5494192
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 7;(source:Araport11)
TAIR Curator Summary: Encodes a plasma membrane localized member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.
TAIR Short Description: cyclic nucleotide gated channel 7
TAIR Aliases: ATCNGC7, CNGC7
Gene
Length: 3134  
Chromosome Location: Chr4: 15576763-15579896
Organism . Short Name: A. thaliana
TAIR Computational Description: Nucleotide/sugar transporter family protein;(source:Araport11)
TAIR Curator Summary: Golgi-localized nucleotide sugar (UDP-GlcNAc) transporter that delivers an essential substrate for the maturation of N-glycans and the GIPC class of sphingolipids.
TAIR Short Description: Nucleotide/sugar transporter family protein
TAIR Aliases: UGNT1
Gene
Length: 2207  
Chromosome Location: Chr5: 26955568-26957774
Organism . Short Name: A. thaliana
TAIR Computational Description: Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
TAIR Curator Summary: Encodes a telomeric DNA binding protein and Single Myb Histone (SMH) gene family member. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
TAIR Short Description: Homeodomain-like/winged-helix DNA-binding family protein
TAIR Aliases: ATTBP3, ATTRB2, TBP3, TRB2
Ontology Term Synonym
Name: copy number polymorphism
Type: synonym
Gene  
Length: 1274  
Chromosome Location: Chr1: 18232407-18233680
Organism . Short Name: A. thaliana
TAIR Computational Description: Rho guanine nucleotide exchange factor;(source:Araport11)
TAIR Curator Summary: Paternally expressed gene that is localized around the sperm nuclei of pollen. PEG2 acts as a sponge for siRNA854 during endosperm development, this action is necessary to induce triploid seed abortion.
TAIR Aliases: PEG2
Gene
Length: 2088  
Chromosome Location: Chr1: 28634881-28636968
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 3;(source:Araport11)
TAIR Curator Summary: Encodes a nucleotide-sugar transporter. It is is likely the primary Golgi GDP-L-galactose transporter, and provides GDP-L-galactose for RG-II biosynthesis. Knockout lines are lethal. RNAi suppressor lines were used for analysis. GDP-L-Galactose transport was affected. This process was required for pectic RG-II biosynthesis.
TAIR Short Description: golgi nucleotide sugar transporter 3
TAIR Aliases: GGLT1, GONST3
Gene
Length: 3480  
Chromosome Location: Chr2: 5687316-5690795
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 1;(source:Araport11)
TAIR Curator Summary: Encodes a Golgi-localized GDP-mannose transporter. It can transport ADP-glucose in vitro.
TAIR Short Description: golgi nucleotide sugar transporter 1
TAIR Aliases: GONST1
Gene      
Length: 1701  
Chromosome Location: Chr3: 21748228-21749928
Organism . Short Name: A. thaliana
TAIR Computational Description: secretion-regulating guanine nucleotide exchange factor;(source:Araport11)
Gene
Length: 2981  
Chromosome Location: Chr1: 2242012-2244992
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 2;(source:Araport11)
TAIR Curator Summary: Encodes a GDP-mannose transporter.
TAIR Short Description: golgi nucleotide sugar transporter 2
TAIR Aliases: GONST2
Gene
Length: 1636  
Chromosome Location: Chr1: 7678208-7679843
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 5;(source:Araport11)
TAIR Curator Summary: Encodes a Golgi-localized nucleotide-sugar transporter.
TAIR Short Description: golgi nucleotide sugar transporter 5
TAIR Aliases: GONST5
Gene
Length: 1642  
Chromosome Location: Chr5: 5728789-5730430
Organism . Short Name: A. thaliana
TAIR Computational Description: endoplasmic reticulum-adenine nucleotide transporter 1;(source:Araport11)
TAIR Curator Summary: This gene is predicted to encode an ER-localized adenine nucleotide transporter with six putative transmembrane helices. It appears to act as a ATP:ADP antiporter when expressed in E.coli plasma membranes. Transcript levels for several ER-localized chaperones (e.g. BIP1/2) and other ATP-requiring ER proteins (e.g. CPK2) are reduced in er-ant1 knock-out lines, suggesting a lack of adequate ATP transport into the ER in these mutants. They also have reduced seed oil and seed protein levels.
TAIR Short Description: endoplasmic reticulum-adenine nucleotide transporter 1
TAIR Aliases: ER-ANT1
Gene
Length: 1540  
Chromosome Location: Chr5: 6749613-6751152
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 4;(source:Araport11)
TAIR Curator Summary: Encodes a Golgi-localized nucleotide-sugar transporter.
TAIR Short Description: golgi nucleotide sugar transporter 4
TAIR Aliases: GFT1, GONST4