| Type |
Details |
Score |
| Gene |
| Length: |
3318
 |
| Chromosome Location: |
Chr3: 19188844-19192161 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
inflorescence meristem receptor-like kinase 2;(source:Araport11) |
| TAIR Curator Summary: |
encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
inflorescence meristem receptor-like kinase 2 |
| TAIR Aliases: |
IMK2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2474
|
| Chromosome Location: |
Chr5: 1891880-1894353 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
AP2/B3-like transcriptional factor family protein;(source:Araport11) |
| TAIR Curator Summary: |
Transcription repressor involved in regulation of inflorescence architecture. |
| TAIR Short Description: |
AP2/B3-like transcriptional factor family protein |
| TAIR Aliases: |
DPA4, NGAL3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1168
|
| Chromosome Location: |
Chr3: 21506572-21507739 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile–adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. |
| TAIR Short Description: |
C2H2 and C2HC zinc fingers superfamily protein |
| TAIR Aliases: |
GIS |
|
•
•
•
•
•
|
| Gene |
| Length: |
5244
|
| Chromosome Location: |
Chr4: 14297044-14302287 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Enoyl-CoA hydratase/isomerase family;(source:Araport11) |
| TAIR Curator Summary: |
Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities. |
| TAIR Short Description: |
Enoyl-CoA hydratase/isomerase family |
| TAIR Aliases: |
AIM1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
769
|
| Chromosome Location: |
Chr3: 6440817-6441585 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
inflorescence deficient in abscission (IDA)-like 4;(source:Araport11) |
| TAIR Curator Summary: |
Similar to Inflorescance deficient in abscission (IDA). Involved in floral organ abscission. |
| TAIR Short Description: |
inflorescence deficient in abscission (IDA)-like 4 |
| TAIR Aliases: |
IDL4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
645
|
| Chromosome Location: |
Chr3: 9337431-9338075 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
inflorescence deficient in abscission (IDA)-like 1;(source:Araport11) |
| TAIR Curator Summary: |
Similar to Inflorescence Deficient in Abscission (IDA). Involved in floral organ abscission. |
| TAIR Short Description: |
inflorescence deficient in abscission (IDA)-like 1 |
| TAIR Aliases: |
IDL1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
743
|
| Chromosome Location: |
Chr5: 3047011-3047753 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
inflorescence deficient in abscission (IDA)-like 3;(source:Araport11) |
| TAIR Curator Summary: |
Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission. |
| TAIR Short Description: |
inflorescence deficient in abscission (IDA)-like 3 |
| TAIR Aliases: |
IDL3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
657
|
| Chromosome Location: |
Chr1: 28914446-28915102 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
inflorescence deficient in abscission (IDA)-like 5;(source:Araport11) |
| TAIR Curator Summary: |
Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission. |
| TAIR Short Description: |
inflorescence deficient in abscission (IDA)-like 5 |
| TAIR Aliases: |
IDL5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
867
|
| Chromosome Location: |
Chr5: 25850509-25851375 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
inflorescence deficient in abscission (IDA)-like 2;(source:Araport11) |
| TAIR Curator Summary: |
Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission. |
| TAIR Short Description: |
inflorescence deficient in abscission (IDA)-like 2 |
| TAIR Aliases: |
IDL2 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
102
|
|
•
•
•
•
•
|
| Gene |
| Length: |
782
|
| Chromosome Location: |
Chr5: 2043419-2044200 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Together with GIS and ZPF8 plays partially redundant and essential role in inflorescence trichome initiation and in its regulation by GA and cytokinins. |
| TAIR Short Description: |
C2H2 and C2HC zinc fingers superfamily protein |
| TAIR Aliases: |
GIS2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
865
|
| Chromosome Location: |
Chr1: 25829917-25830781 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Putative membrane lipoprotein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely. |
| TAIR Short Description: |
Putative membrane lipoprotein |
| TAIR Aliases: |
IDA |
|
•
•
•
•
•
|
| Gene |
| Length: |
1853
|
| Chromosome Location: |
Chr4: 9978703-9980555 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
NAC domain containing protein 71;(source:Araport11) |
| TAIR Curator Summary: |
Encodes ANAC071, a transcription factor involved in cell proliferation in incised inflorescence stems. |
| TAIR Short Description: |
NAC domain containing protein 71 |
| TAIR Aliases: |
anac071, NAC071 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2269
|
| Chromosome Location: |
Chr4: 504135-506403 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
phosphatidylinositol phosphate kinase 10;(source:Araport11) |
| TAIR Curator Summary: |
Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems. |
| TAIR Short Description: |
phosphatidylinositol phosphate kinase 10 |
| TAIR Aliases: |
ATPIPK10, PIP5K11, PIPK10 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1373
|
| Chromosome Location: |
Chr5: 1024500-1025872 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11) |
| TAIR Curator Summary: |
Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole. TFL1 plays an antagonistic role to FT/TSF in the determination of inflorescence meristem identity. |
| TAIR Short Description: |
PEBP (phosphatidylethanolamine-binding protein) family protein |
| TAIR Aliases: |
TFL-1, TFL1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2444
|
| Chromosome Location: |
Chr4: 12645542-12647985 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
GATA-type zinc finger protein with TIFY domain-containing protein;(source:Araport11) |
| TAIR Curator Summary: |
ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif. |
| TAIR Short Description: |
GATA-type zinc finger protein with TIFY domain |
| TAIR Aliases: |
AtTIFY1, GATA25, TIFY1, ZIM |
|
•
•
•
•
•
|
| Gene |
| Length: |
4782
|
| Chromosome Location: |
Chr5: 13936086-13940867 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Transducin/WD40 repeat-like superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development. |
| TAIR Short Description: |
Transducin/WD40 repeat-like superfamily protein |
| TAIR Aliases: |
SAP |
|
•
•
•
•
•
|
| Gene |
| Length: |
3007
|
| Chromosome Location: |
Chr3: 2229355-2232361 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
GTP-binding family protein;(source:Araport11) |
| TAIR Curator Summary: |
Arabidopsis NSN1 encodes a nucleolar GTP- binding protein and is required for maintenance of inflorescence meristem identity and floral organ development. |
| TAIR Short Description: |
GTP-binding family protein |
| TAIR Aliases: |
NSN1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1483
|
| Chromosome Location: |
Chr2: 7406911-7408393 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
NAC domain containing protein 36;(source:Araport11) |
| TAIR Curator Summary: |
Member of the NAC transcription factor family and more specifically, the ONAC022 subfamily. Involved in leaf and inflorescence stem morphogenesis. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
NAC domain containing protein 36 |
| TAIR Aliases: |
anac036, NAC036 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1578
|
| Chromosome Location: |
Chr2: 17826071-17827648 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
protodermal factor 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia. |
| TAIR Short Description: |
protodermal factor 1 |
| TAIR Aliases: |
PDF1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
14322
|
| Chromosome Location: |
Chr2: 15425321-15439642 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ARM repeat superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Specifically involved in gravity perception and/or gravity signal transduction for the shoot gravitropic response. Effects gravitropism only in inflorescence stems but normal in both hypocotyls and roots. |
| TAIR Short Description: |
ARM repeat superfamily protein |
| TAIR Aliases: |
SGR6 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2419
|
| Chromosome Location: |
Chr2: 19148662-19151080 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
NAD-dependent protein deacetylase HST1-like protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes TAC1 (Tiller Angle Control 1). Influences axillary branch growth angle. Inflorescence stems of TAC1 mutants are vertically oriented and have axillary shoots with narrow branch angles. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
TAC1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1274
|
| Chromosome Location: |
Chr2: 17507343-17508616 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
zinc finger protein 8;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a zinc finger protein containing only a single zinc finger. Together with GIS and GIS2 plays partially redundant and essential role in inflorescence trichome initiation and in its regulation by GA and cytokinins. |
| TAIR Short Description: |
zinc finger protein 8 |
| TAIR Aliases: |
ZFP8 |
|
•
•
•
•
•
|
| Gene |
| Length: |
6058
|
| Chromosome Location: |
Chr4: 2476390-2482447 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
protodermal factor 2;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. |
| TAIR Short Description: |
protodermal factor 2 |
| TAIR Aliases: |
PDF2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2825
|
| Chromosome Location: |
Chr3: 3648902-3651726 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
AP2/B3-like transcriptional factor family protein;(source:Araport11) |
| TAIR Curator Summary: |
SOD7 encodes nuclear localized B3 DNA binding domain and a transcriptional repression motif. Belongs to the RAV gene family. Functions in regulation of seed size and binds to and represses KLU. Transcription repressor involved in regulation of inflorescence architecture. |
| TAIR Short Description: |
AP2/B3-like transcriptional factor family protein |
| TAIR Aliases: |
NGAL2, SOD7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1311
|
| Chromosome Location: |
Chr1: 27516572-27517882 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
bonsai;(source:Araport11) |
| TAIR Curator Summary: |
The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development. |
| TAIR Short Description: |
bonsai |
| TAIR Aliases: |
APC13, BNS |
|
•
•
•
•
•
|
| Gene |
| Length: |
2816
|
| Chromosome Location: |
Chr4: 13984695-13987510 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Developmental regulator, ULTRAPETALA;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. Acts opposite to CLF which represses AG, but preventing deposition of CLF repressive methylation marks.ULT1 acts as an anti-repressor that counteracts EMF1 action through modulation of histone marks on target genes. Regulates developmental as well as biotic and abiotic stress response genes. |
| TAIR Short Description: |
Developmental regulator, ULTRAPETALA |
| TAIR Aliases: |
ULT, ULT1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1631
|
| Chromosome Location: |
Chr5: 19481897-19483527 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
xyloglucan endotransglucosylase/hydrolase 20;(source:Araport11) |
| TAIR Curator Summary: |
putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. Involved in cell proliferation in incised inflorescence stems. |
| TAIR Short Description: |
xyloglucan endotransglucosylase/hydrolase 20 |
| TAIR Aliases: |
ATXTH20, XTH20 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
191
|
|
•
•
•
•
•
|
| Gene |
| Length: |
4145
|
| Chromosome Location: |
Chr1: 26296540-26300684 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
nitrate transporter 1:2;(source:Araport11) |
| TAIR Curator Summary: |
Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. It also acts as an ABA importer at the site of ABA biosynthesis and is important for the regulation of stomatal aperture in inflorescence stems. |
| TAIR Short Description: |
nitrate transporter 1:2 |
| TAIR Aliases: |
AIT1, AtNPF4.6, ATNRT1:2, NPF4.6, NRT1.2, NRT1:2, NTL1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1870
|
| Chromosome Location: |
Chr1: 28013180-28015049 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
cytochrome P450, family 98, subfamily A, polypeptide 8;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a tricoumaroylspermidine / triferuloylspermidine meta-hydroxylase that participates in the formation of N1,N5-di(hydroxyferuloyol)- N10-sinapoyl spermidine, an important constituent of pollen. This gene appears to be expressed in young flower buds and inflorescence tips with notably high levels of expression in the tapetum and pollen. |
| TAIR Short Description: |
cytochrome P450, family 98, subfamily A, polypeptide 8 |
| TAIR Aliases: |
CYP98A8 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2543
|
| Chromosome Location: |
Chr5: 19386045-19388587 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
eukaryotic release factor 1-1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a eukaryotic release factor 1 homolog. Cosuppression of the gene's expression results affects cell elongation of the inflorescence stem, specifically the internodes, and radial cell division. Expression of the protein is primarily observed in the vascular system and in actively growing and elongating zones. |
| TAIR Short Description: |
eukaryotic release factor 1-1 |
| TAIR Aliases: |
AteRF1-1, ERF1-1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1787
|
| Chromosome Location: |
Chr2: 8808414-8810200 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ROP-interactive CRIB motif-containing protein 6;(source:Araport11) |
| TAIR Curator Summary: |
encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC7 and RIC8 (subfamily group II). Gene is expressed predominantly in inflorescence and flower tissue. |
| TAIR Short Description: |
ROP-interactive CRIB motif-containing protein 6 |
| TAIR Aliases: |
RIC6 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2042
|
| Chromosome Location: |
Chr3: 6091110-6093151 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
alanine-tRNA ligase, putative (DUF760);(source:Araport11) |
| TAIR Curator Summary: |
mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem. Interacts with chloroplast chaperone CLPC1, which unfolds and delivers substrates to the stromal CLPPRT protease complex for degradation. Likely involved in senescence. Forms a small module with CLPD, connecting to DUF179-3, CLPX1, and CLPB3. |
| TAIR Short Description: |
Protein of unknown function (DUF760) |
| TAIR Aliases: |
DUF760-6, DUF760?5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1724
|
| Chromosome Location: |
Chr3: 8373375-8375098 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ROP-interactive CRIB motif-containing protein 5;(source:Araport11) |
| TAIR Curator Summary: |
encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Gene is expressed predominantly in inflorescence and flower tissue. |
| TAIR Short Description: |
ROP-interactive CRIB motif-containing protein 5 |
| TAIR Aliases: |
RIC5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1667
|
| Chromosome Location: |
Chr1: 28016045-28017711 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
cytochrome P450, family 98, subfamily A, polypeptide 9;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a tricoumaroylspermidine meta-hydroxylase that participates in the formation of N1,N5-di(hydroxyferuloyol)- N10-sinapoylspermidine, an important constituent of pollen. This gene appears to be expressed in young flower buds and inflorescence tips with notably high levels of expression in the tapetum and pollen. It is also expressed in root tips. |
| TAIR Short Description: |
cytochrome P450, family 98, subfamily A, polypeptide 9 |
| TAIR Aliases: |
CYP98A9 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1353
|
| Chromosome Location: |
Chr1: 28177670-28179022 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
pathogenesis-related protein 5;(source:Araport11) |
| TAIR Curator Summary: |
Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
pathogenesis-related gene 5 |
| TAIR Aliases: |
PR-5, PR5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3727
|
| Chromosome Location: |
Chr3: 21430922-21434648 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Required for maintenance of inflorescence and shoot SAMs and normal development of the derived vascular cambium, functions in the SAM to promote continuous organogenesis, affects SAM development through STM, where it affects intracellular localization of STM in SAM cells in the peripheral region and prevents STM localization toward the cell wall of SAM cells in the peripheral region. |
| TAIR Short Description: |
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein |
| TAIR Aliases: |
FTIP3, MCTP3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3628
|
| Chromosome Location: |
Chr4: 9012552-9016179 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Cysteine proteinases superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Cysteine proteinases superfamily protein |
| TAIR Aliases: |
ATESD4, ESD4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3215
|
| Chromosome Location: |
Chr1: 19122161-19125375 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Required for maintenance of inflorescence and shoot SAMs and normal development of the derived vascular cambium, functions in the SAM to promote continuous organogenesis, affects SAM development through STM, where it affects intracellular localization of STM in SAM cells in the peripheral region and prevents STM localization toward the cell wall of SAM cells in the peripheral region. |
| TAIR Short Description: |
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein |
| TAIR Aliases: |
FTIP4, MCTP4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2622
|
| Chromosome Location: |
Chr5: 5827142-5829763 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
like heterochromatin protein (LHP1);(source:Araport11) |
| TAIR Curator Summary: |
Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state. |
| TAIR Short Description: |
like heterochromatin protein (LHP1) |
| TAIR Aliases: |
AtLHP1, LHP1, TFL2 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
253
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
77
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
244
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
836
|
|
•
•
•
•
•
|
| Gene |
| Length: |
1513
|
| Chromosome Location: |
Chr4: 14828712-14830224 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
xyloglucan endotransglucosylase/hydrolase 19;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. Involved in cell proliferation in incised inflorescence stems. |
| TAIR Short Description: |
xyloglucan endotransglucosylase/hydrolase 19 |
| TAIR Aliases: |
ATXTH19, XTH19 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3621
|
| Chromosome Location: |
Chr2: 18807505-18811125 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
AGAMOUS-like 20;(source:Araport11) |
| TAIR Curator Summary: |
Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. |
| TAIR Short Description: |
AGAMOUS-like 20 |
| TAIR Aliases: |
AGL20, ATSOC1, SOC1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2155
|
| Chromosome Location: |
Chr3: 10087106-10089260 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
plant UBX domain-containing protein 1;(source:Araport11) |
| TAIR Curator Summary: |
encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo. |
| TAIR Short Description: |
plant UBX domain-containing protein 1 |
| TAIR Aliases: |
PUX1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3581
|
| Chromosome Location: |
Chr1: 27659673-27663253 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Auxin efflux carrier family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins. |
| TAIR Short Description: |
Auxin efflux carrier family protein |
| TAIR Aliases: |
ATPIN1, PIN1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2647
|
| Chromosome Location: |
Chr4: 14382819-14385465 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Mnd1 family protein;(source:Araport11) |
| TAIR Curator Summary: |
A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis. |
| TAIR Short Description: |
Mnd1 family protein |
| TAIR Aliases: |
ATMND1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
14047
|
| Chromosome Location: |
Chr1: 29818970-29833016 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
nuclear pore anchor;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments. It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants. Mutations affect flowering time regulation and other developmental processes. Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development. |
| TAIR Short Description: |
nuclear pore anchor |
| TAIR Aliases: |
AtTPR, NUA |
|
•
•
•
•
•
|
| Gene |
| Length: |
2460
|
| Chromosome Location: |
Chr2: 16531527-16533986 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
botrytis-induced kinase1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. Together with ER plays opposing roles in leaf morphogenesis and inflorescence architecture. Required to maintain appropriate auxin response during leaf margin morphogenesis. Interacts with ER-family proteins and directly phosphorylates ER. |
| TAIR Short Description: |
botrytis-induced kinase1 |
| TAIR Aliases: |
BIK1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
6394
|
| Chromosome Location: |
Chr1: 26576486-26582879 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
homeobox knotted-like protein;(source:Araport11) |
| TAIR Curator Summary: |
A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems. |
| TAIR Short Description: |
KNOTTED-like from Arabidopsis thaliana 2 |
| TAIR Aliases: |
ATK1, KNAT2 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
721
|
|
•
•
•
•
•
|
| Gene |
| Length: |
1506
|
| Chromosome Location: |
Chr1: 1208521-1210026 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ROP-interactive CRIB motif-containing protein 3;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. The protein most similar to RIC1 (family subgroup III). Gene is expressed predominantly in inflorescence and flower tissue. Interacts with ROP1 to modulate calcium ion influxes required to generate tip-focused calcium gradients.It |
| TAIR Short Description: |
ROP-interactive CRIB motif-containing protein 3 |
| TAIR Aliases: |
RIC3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1072
|
| Chromosome Location: |
Chr5: 14641442-14642513 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
HIT-type Zinc finger family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes SERRATED LEAVES AND EARLY FLOWERING (SEF), an Arabidopsis homolog of the yeast SWC6 protein, a conserved subunit of the SWR1/SRCAP complex. SEF loss-of-function mutants have a pleiotropic phenotype characterized by serrated leaves, frequent absence of inflorescence internodes, bushy aspect, and flowers with altered number and size of organs. sef plants flower earlier than wild-type plants both under inductive and non-inductive photoperiods. SEF, ARP6 and PIE1 might form a molecular complex in Arabidopsis related to the SWR1/SRCAP complex identified in other eukaryotes. |
| TAIR Short Description: |
HIT-type Zinc finger family protein |
| TAIR Aliases: |
ATSWC6, SEF |
|
•
•
•
•
•
|
| Gene |
| Length: |
2627
|
| Chromosome Location: |
Chr1: 24331373-24333999 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11) |
| TAIR Curator Summary: |
FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). Together with TSF, it plays an antagonistic role to TFL1 in the determination of inflorescence meristem identity. FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1. |
| TAIR Short Description: |
PEBP (phosphatidylethanolamine-binding protein) family protein |
| TAIR Aliases: |
FT, RSB8 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
1168
|
| Chromosome Location: |
Chr3: 21506572-21507739 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
2705
|
| Chromosome Location: |
Chr4: 14297044-14302287 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2240
|
| Chromosome Location: |
Chr4: 11000771-11003010 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a floral inducer that is a homolog of FT. Plants overexpressing this gene flower earlier than Col. Loss-of-function mutations flower later in short days. TSF and FT play overlapping roles in the promotion of flowering, with FT playing the dominant role and together playing an antagonistic role to TFL1 in the determination of inflorescence meristem identity. .TSF sequences show extensive variation in different accessions and may contribute to quantitative variation in flowering time in these accessions. TSF has a complex pattern of spatial expression; it is expressed mainly in phloem and expression is regulated by daylength and vernalization. |
| TAIR Short Description: |
PEBP (phosphatidylethanolamine-binding protein) family protein |
| TAIR Aliases: |
TSF |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
964
|
|
•
•
•
•
•
|
| Gene |
| Length: |
170
|
| Chromosome Location: |
Chr2: 19176108-19176277 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
microRNA ath-MIR166a precursor;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. This particular miRNA is involved in the regulation of vascular development in inflorescence stems, primarily through the regulation of mRNA cleavage of the class III homeodomain-leucine zipper transcription factor ATHB15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC. Pri-mRNA coordinates for MIR166a (converted to TAIR10 based on PMID19304749): Chr2: 19175959-19177071 (forward), length: 1113 bp; exon coordinates: exon 1: 19175959 to 19176341, exon 2: 19176820 to 19177071; mature miRNA and miRNA* are located on exon 1. |
| TAIR Short Description: |
MIR166/MIR166A; miRNA |
| TAIR Aliases: |
MIR166, MIR166A |
|
•
•
•
•
•
|
| Gene |
| Length: |
1933
|
| Chromosome Location: |
Chr3: 14093656-14095588 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
actin-related protein 6;(source:Araport11) |
| TAIR Curator Summary: |
Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). Incorporation of this variant histone into chromatin mediates the ambient temperature response. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times. ARP6 also is involved in globally controlling developmental responses to ambient temperature through incorporation of variant histone H2A.Z into chromatin. |
| TAIR Short Description: |
actin-related protein 6 |
| TAIR Aliases: |
ARP6, ATARP6, ESD1, SUF3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
17067
|
| Chromosome Location: |
Chr2: 12056213-12073279 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| TAIR Aliases: |
CHR3, SYD |
|
•
•
•
•
•
|
| Gene |
| Length: |
3217
|
| Chromosome Location: |
Chr1: 27452748-27455964 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. |
| TAIR Short Description: |
Glucose-methanol-choline (GMC) oxidoreductase family protein |
| TAIR Aliases: |
EDA17, HTH |
|
•
•
•
•
•
|
| mRNA |
| Length: |
782
|
| Chromosome Location: |
Chr5: 2043419-2044200 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
865
|
| Chromosome Location: |
Chr1: 25829917-25830781 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2405
|
| Chromosome Location: |
Chr2: 14589736-14592140 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Protein kinase superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID. |
| TAIR Short Description: |
Protein kinase superfamily protein |
| TAIR Aliases: |
ABR, PID |
|
•
•
•
•
•
|
| mRNA |
| Length: |
3234
|
| Chromosome Location: |
Chr3: 19188844-19192161 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
720
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
784
|
|
•
•
•
•
•
|
| mRNA |
| Length: |
769
|
| Chromosome Location: |
Chr3: 6440817-6441585 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
645
|
| Chromosome Location: |
Chr3: 9337431-9338075 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
1304
|
| Chromosome Location: |
Chr4: 12645542-12647985 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
1422
|
| Chromosome Location: |
Chr4: 12645544-12647985 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
1305
|
| Chromosome Location: |
Chr4: 12645564-12647864 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
743
|
| Chromosome Location: |
Chr5: 3047011-3047753 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
460
|
| Chromosome Location: |
Chr1: 28914446-28915102 |
|
•
•
•
•
•
|
| mRNA |
| Length: |
867
|
| Chromosome Location: |
Chr5: 25850509-25851375 |
|
•
•
•
•
•
|
| Pseudogene |
| Length: |
405
|
| Chromosome Location: |
Chr5: 2038817-2039221 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
pseudogene of C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Pseudogene of AT5G06650; GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding / transcription factor/ zinc ion binding |
| TAIR Short Description: |
NULL |
|
|
•
•
•
•
•
|
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