| Type |
Details |
Score |
| Gene |
| Length: |
395
 |
| Chromosome Location: |
Chr3: 1292359-1292753 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 21;(source:Araport11) |
| TAIR Curator Summary: |
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
| TAIR Short Description: |
RALF-like 21 |
| TAIR Aliases: |
RALFL21 |
|
•
•
•
•
•
|
| Gene |
| Length: |
289
|
| Chromosome Location: |
Chr4: 7037084-7037372 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 29;(source:Araport11) |
| TAIR Curator Summary: |
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
| TAIR Short Description: |
RALF-like 29 |
| TAIR Aliases: |
RALFL29 |
|
•
•
•
•
•
|
| Gene |
| Length: |
633
|
| Chromosome Location: |
Chr4: 7624629-7625261 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 30;(source:Araport11) |
| TAIR Curator Summary: |
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
| TAIR Short Description: |
RALF-like 30 |
| TAIR Aliases: |
RALFL30 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1209
|
| Chromosome Location: |
Chr4: 8984787-8985995 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ralf-like 33;(source:Araport11) |
| TAIR Curator Summary: |
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
ralf-like 33 |
| TAIR Aliases: |
RALF33, RALFL33 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3263
|
| Chromosome Location: |
Chr4: 13766699-13769961 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a stomatin-like protein that is present in a mitochondrial membrane-bound 3 MDa protein complex and is involved in the assembly of mitochondrial respiratory supercomplexes. There is an observed increase in abundance of respiratory complex III2 in SLP1 single and double knockout mutants. The protein is not redundant with Arabidopsis SLP2 (At5g54100). |
| TAIR Short Description: |
SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| TAIR Aliases: |
AtSLP1, SLP1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3653
|
| Chromosome Location: |
Chr5: 4925850-4929502 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
tyrosyl-DNA phosphodiesterase-like protein;(source:Araport11) |
| TAIR Curator Summary: |
Tyrosyl-DNA phosphodiesterase 1 involved in DNA repair. TDP1 is involved the repair of Topoisomerase 1 cleavage complexes (tdp1 mutants are camptotecin hypersensitive). tdp1/wss1A double mutants show a synergistic sensitivity after camptothecin treatment. tdp1/mus81 double mutants show an elevated number of dead cells in root meristems after camptothecin treatment (compared to the single mutants). |
| TAIR Short Description: |
tyrosyl-DNA phosphodiesterase-related |
| TAIR Aliases: |
TDP1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
386
|
| Chromosome Location: |
Chr1: 8203933-8204318 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 2;(source:Araport11) |
| TAIR Curator Summary: |
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
| TAIR Short Description: |
RALF-like 2 |
| TAIR Aliases: |
RALFL2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
372
|
| Chromosome Location: |
Chr1: 8205872-8206243 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 3;(source:Araport11) |
| TAIR Curator Summary: |
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
| TAIR Short Description: |
RALF-like 3 |
| TAIR Aliases: |
RALFL3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
324
|
| Chromosome Location: |
Chr1: 13049114-13049437 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 5;(source:Araport11) |
| TAIR Curator Summary: |
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
| TAIR Short Description: |
RALF-like 5 |
| TAIR Aliases: |
RALFL5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
246
|
| Chromosome Location: |
Chr1: 22333916-22334161 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 6;(source:Araport11) |
| TAIR Curator Summary: |
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
| TAIR Short Description: |
RALF-like 6 |
| TAIR Aliases: |
RALF6, RALFL6 |
|
•
•
•
•
•
|
| Gene |
| Length: |
246
|
| Chromosome Location: |
Chr1: 22392729-22392974 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 7;(source:Araport11) |
| TAIR Curator Summary: |
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
| TAIR Short Description: |
RALF-like 7 |
| TAIR Aliases: |
RALF7, RALFL7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1593
|
| Chromosome Location: |
Chr1: 842659-844251 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers. |
| TAIR Short Description: |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
|
•
•
•
•
•
|
| Gene |
| Length: |
1358
|
| Chromosome Location: |
Chr5: 26767599-26768956 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ralf-like 34;(source:Araport11) |
| TAIR Curator Summary: |
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
ralf-like 34 |
| TAIR Aliases: |
RALF34, RALFL34 |
|
•
•
•
•
•
|
| Gene |
| Length: |
650
|
| Chromosome Location: |
Chr2: 9379465-9380114 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 15;(source:Araport11) |
| TAIR Curator Summary: |
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region. |
| TAIR Short Description: |
RALF-like 15 |
| TAIR Aliases: |
RALFL15 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1316
|
| Chromosome Location: |
Chr2: 12960847-12962162 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Homeodomain-like superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
In a tandem repeat with AT2G30424 and AT2G30432. Negative regulator of trichome development. Overexpression results in the suppression of trichomes and overproduction of root hairs; single mutant shows an increase in trichome number on leaves and petiols. Double and triple mutant analysis indicates that the ETC2 gene acts redundant with TRY and CPC in trichome patterning. |
| TAIR Short Description: |
Homeodomain-like superfamily protein |
| TAIR Aliases: |
ETC2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1400
|
| Chromosome Location: |
Chr2: 13952716-13954115 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RALF-like 17;(source:Araport11) |
| TAIR Curator Summary: |
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region. |
| TAIR Short Description: |
RALF-like 17 |
| TAIR Aliases: |
RALFL17 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1869
|
| Chromosome Location: |
Chr5: 871204-873072 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
UDP-Glycosyltransferase superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a dihydroxybenzoic acid (DHBA) glycosyltransferase. The Col-0 enzyme is responsible for biosynthesis of 2,3-DHBA xyloside and 2,5-DHBA xyloside. The Col-0 enzyme is specific for UDP-xylose and the C24 enzyme uses both UDP-glucose and UDP-xylose. This difference in sugar donor specificity was shown to be largely due to a single amino acid change between the two isoforms. |
| TAIR Short Description: |
UDP-Glycosyltransferase superfamily protein |
| TAIR Aliases: |
UGT89A2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1858
|
| Chromosome Location: |
Chr5: 4980374-4982231 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
SPX domain-containing protein 4;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein with a single SYG1/Pho81/XPR1 (SPX) domain that localizes to both the cytosol and nucleus, acting as a dose-dependent modulator of PHR1-dependent and PHR1-independent phosphate-starvation responses in shoots. SPX4 prevents translocation of PHR1 (AT4G28610) to the nucleus in a dose- and Pi-dependent manner. In contrast to SPX1, SPX4 modulates rather than suppresses phosphate-starvation response (PSR) gene expression. |
| TAIR Short Description: |
SPX domain gene 4 |
| TAIR Aliases: |
ATSPX4, SPX4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3003
|
| Chromosome Location: |
Chr5: 4808091-4811093 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
cyclic nucleotide-gated channel 18;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth and pollen tube guidance to ovules. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery. Also functions as a Ca2+ permeable channel. |
| TAIR Short Description: |
cyclic nucleotide-gated channel 18 |
| TAIR Aliases: |
ATCNGC18, CNGC18 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3624
|
| Chromosome Location: |
Chr4: 7063255-7066878 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
hapless 2;(source:Araport11) |
| TAIR Curator Summary: |
Encodes HAP2 with the following predicted motifs: an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2 is expressed only in the haploid sperm and is required for pollen tube guidance and fertilization. Predominantly localized to sperm endoplasmic reticulum membranes. May also reside in other endomembranes, including the plasma membrane. Target promoter of the male germline-specific transcription factor DUO1. |
| TAIR Short Description: |
hapless 2 |
| TAIR Aliases: |
GCS1, HAP2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1239
|
| Chromosome Location: |
Chr1: 9882951-9884189 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ralf-like 4;(source:Araport11) |
| TAIR Curator Summary: |
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF4 and RALF19 act redundantly in the pollen tube to regulate pollen tube growth. |
| TAIR Short Description: |
ralf-like 4 |
| TAIR Aliases: |
AtRALF4, RALF4, RALFL4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3546
|
| Chromosome Location: |
Chr1: 3041996-3045541 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ATP-citrate lyase A-3;(source:Araport11) |
| TAIR Curator Summary: |
Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity. |
| TAIR Short Description: |
ATP-citrate lyase A-3 |
| TAIR Aliases: |
ACLA-3 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
438
|
|
•
•
•
•
•
|
| Gene |
| Length: |
3470
|
| Chromosome Location: |
Chr3: 15663000-15666469 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
calmodulin 7;(source:Araport11) |
| TAIR Curator Summary: |
EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant. Unique member of the CAM family that works as a transcription factor in light signaling pathways; works in concert with CONSTITUTIVE PHOTOMORPHOGENIC 1 and ELONGATED HYPOCOTYL 5, and plays an important role in seedling development; involved in the regulation of the activity of various Ca2+-gated channels such as cyclic nucleotide gated channel 6 (CNGC6), CNGC14 and auto-inhibited Ca2+ ATPase 8. |
| TAIR Short Description: |
calmodulin 7 |
| TAIR Aliases: |
AtCAM7, CAM7, ZBF3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2235
|
| Chromosome Location: |
Chr4: 12658433-12660667 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
hydroxyproline-rich glycoprotein family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a proline-rich protein SICKLE (SIC). Required for development and abiotic stress tolerance. Involved in microRNA biogenesis. It is involved in mRNA splicing. It is a single copy gene in Arabidopsis and likely specific to higher plants. Along with RCN1, it functions in regulating auxin transport processes in part by regulating the recycling of PIN1 and PIN2 auxin transporters. It is required for circadian clock temperature responses. |
| TAIR Short Description: |
hydroxyproline-rich glycoprotein family protein |
| TAIR Aliases: |
RON3, SIC, WARP2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2072
|
| Chromosome Location: |
Chr1: 12157054-12159125 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
D111/G-patch domain-containing protein;(source:Araport11) |
| TAIR Curator Summary: |
Has single homolog in Arabidopsis, also homologs in human, mouse and C. elegans; contains one G-patch domain (known to mediate RNA-protein interactions) and two KOW domains (may bind RNA and/or protein); localized to the nucleus; mutant suppresses high SA levels and constitutive disease resistance in snc1 npr1 background; required for basal resistance against Pseudomonas syringae maculicola ES4326 and R gene-mediated resistance specified by RPM1, PPS4 and RPP4; |
| TAIR Short Description: |
D111/G-patch domain-containing protein |
| TAIR Aliases: |
MOS2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3245
|
| Chromosome Location: |
Chr5: 23032449-23035693 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
nucleosome assembly protein 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes. Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination. |
| TAIR Short Description: |
nucleosome assembly protein 1;3 |
| TAIR Aliases: |
NAP1;3, NFA03, NFA3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4240
|
| Chromosome Location: |
Chr2: 803656-807895 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
myb domain protein 88;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype. Also regulates female reproductive development. |
| TAIR Short Description: |
myb domain protein 88 |
| TAIR Aliases: |
AtMYB88, MYB88 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1921
|
| Chromosome Location: |
Chr3: 10669725-10671645 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
CLAVATA3/ESR-RELATED 25;(source:Araport11) |
| TAIR Curator Summary: |
Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo.CLE25 participates in long distance signaling in response to dehydration. It produces a graft transmissible signal from root to shoot that induces ABA synthesis and results in stomatal closure. The BAM1 and BAM3 receptor-kinases are likely receptors for CLE25 as they are required for this signaling. |
| TAIR Short Description: |
CLAVATA3/ESR-RELATED 25 |
| TAIR Aliases: |
CLE25 |
|
•
•
•
•
•
|
| Gene |
| Length: |
8399
|
| Chromosome Location: |
Chr1: 29716350-29724748 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
histone acetyltransferase of the CBP family 1;(source:Araport11) |
| TAIR Curator Summary: |
Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity. No single prior lysine acetylation is sufficient to block HAC1 acetylation of the H3 or H4 peptides, suggesting that HAC1, HAC5, and HAC12 can acetylate any of several lysines present in the peptides. HAM2 acetylates histone H4 lysine 5. A plant line expressing an RNAi construct targeted against HAC1 has reduced rates of agrobacterium-mediated root transformation. |
| TAIR Short Description: |
histone acetyltransferase of the CBP family 1 |
| TAIR Aliases: |
ATHAC1, ATHPCAT2, HAC1, PCAT2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
854
|
| Chromosome Location: |
Chr1: 653604-654457 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
rapid alkalinization factor 1;(source:Araport11) |
| TAIR Curator Summary: |
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. Mediates Ca2+-dependent signaling. Regulates the splicing of flowering genes and exerts an opposite effect on the flowering time compared with FER. |
| TAIR Short Description: |
rapid alkalinization factor 1 |
| TAIR Aliases: |
ATRALF1, RALF1, RALFL1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2011
|
| Chromosome Location: |
Chr5: 17694680-17696690 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
plasmodesmata-located protein 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD. |
| TAIR Short Description: |
plasmodesmata-located protein 1 |
| TAIR Aliases: |
PDLP1, PDLP1A |
|
•
•
•
•
•
|
| Gene |
| Length: |
11437
|
| Chromosome Location: |
Chr3: 15233845-15245281 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
HOPM interactor 7;(source:Araport11) |
| TAIR Curator Summary: |
AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome. Critical for cuticle formation and related leaf surface defense against the bacterial pathogen Pseudomonas syringae pathovar tomato (Pto). |
| TAIR Short Description: |
HOPM interactor 7 |
| TAIR Aliases: |
ATMIN7, BEN1, BIG5, MIN7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3364
|
| Chromosome Location: |
Chr4: 13232545-13235908 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
nucleosome assembly protein1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes. The mRNA is cell-to-cell mobile. Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination. |
| TAIR Short Description: |
nucleosome assembly protein1;1 |
| TAIR Aliases: |
ATNAP1;1, NAP1;1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3053
|
| Chromosome Location: |
Chr3: 1518857-1521909 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
cyclin family;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein with moderate sequence similarity to the maize microtubule-binding protein TANGLED1. A single base-pair deletion (-A) at position Chr3:1519176 in Columbia relative to the Landsberg erecta and Achkarren-2 ecotype (see ESTs DR378436 and CB26450) introduces a frame-shift and premature termination codon. The protein encoded from the Columbia gene is truncated by 29 amino acids relative to the Landsberg erecta and Achkarren-2 encoded proteins. Involved in the identification of the division plane during mitosis amd cytokinesis |
| TAIR Short Description: |
cyclin family |
| TAIR Aliases: |
ATN, ATTAN, TAN1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2078
|
| Chromosome Location: |
Chr3: 23375584-23377661 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
nuclease;(source:Araport11) |
| TAIR Curator Summary: |
A mutation in ANTAGONIST OF LHP1 1 (ALP1) suppresses the phenotype of lhp1 mutant plants. ALP1 interacts genetically with several PcG and trxG components and antagonizes PcG silencing. The interaction has a negative effect on polycomb-mediated gene repression since double mutant combinations of clf alp1 or lhp1 alp1 show supression of the clf and lhp1 single mutant phenotypes. ALP1 domestication probably occured at the root of angiosperm diversification coincident with mutation of conserved residues important for endonuclease activity. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
ALP1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
5660
|
| Chromosome Location: |
Chr1: 3095160-3100819 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
phytochrome A;(source:Araport11) |
| TAIR Curator Summary: |
Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. |
| TAIR Short Description: |
phytochrome A |
| TAIR Aliases: |
FHY2, FRE1, HY8, PHYA |
|
•
•
•
•
•
|
| Gene |
| Length: |
2135
|
| Chromosome Location: |
Chr2: 14793567-14795701 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Exostosin family protein;(source:Araport11) |
| TAIR Curator Summary: |
Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems. |
| TAIR Short Description: |
Exostosin family protein |
| TAIR Aliases: |
ARAD1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3918
|
| Chromosome Location: |
Chr3: 17183042-17186959 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Homeodomain-like superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Homeodomain-like superfamily protein |
| TAIR Aliases: |
LUX, PCL1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
8497
|
| Chromosome Location: |
Chr3: 4146399-4154895 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
histone acetyltransferase of the CBP family 5;(source:Araport11) |
| TAIR Curator Summary: |
Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
histone acetyltransferase of the CBP family 5 |
| TAIR Aliases: |
ATHPCAT4, HAC5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4507
|
| Chromosome Location: |
Chr4: 12551552-12556058 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Chaperone protein htpG family protein;(source:Araport11) |
| TAIR Curator Summary: |
encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues. |
| TAIR Short Description: |
Chaperone protein htpG family protein |
| TAIR Aliases: |
AtHsp90-7, AtHsp90.7, HSP90, HSP90.7, SHD |
|
•
•
•
•
•
|
| Gene |
| Length: |
1222
|
| Chromosome Location: |
Chr1: 6773302-6774523 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
dehydroascorbate reductase;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.Encodes about 50-60% of extractable leaf GSH-dependent DHAR activity, but single knockout mutants show unaltered ascorbate and glutathione status in optimal and oxidative stress conditions (PMID:28381499). Acts redundantly with DHAR2 to oxidize glutathione in response to increased intracelullar hydrogen peroxide (catalase deficiency). Complementation of a cat2 dhar1 dhar2 dhar3 quadruple mutant with DHAR1 fully restores cat2 phenotype and pathogenesis-related responses(PMID:28381499). |
| TAIR Short Description: |
dehydroascorbate reductase |
| TAIR Aliases: |
ATDHAR1, DHAR1, DHAR5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1798
|
| Chromosome Location: |
Chr1: 26861657-26863454 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
WHIRLY 2;(source:Araport11) |
| TAIR Curator Summary: |
Encodes WHY2, a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus. WHY2 is a member of the Whirly family proteins present mainly in the plant kingdom performing various activities related to DNA metabolism. Crystal structure of Solanum tuberosum WHY2, a close homolog of Arabidopsis WHY2, reveal that Whirly proteins bind to single strand DNA to promote accurate repair of DNA double-strand breaks over an error-prone repair pathway. |
| TAIR Short Description: |
WHIRLY 2 |
| TAIR Aliases: |
ATWHY2, WHY2 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
372
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
341
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
240
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
224
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
480
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
228
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
480
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
224
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
243
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
242
|
|
•
•
•
•
•
|
| Gene |
| Length: |
3372
|
| Chromosome Location: |
Chr2: 16672493-16675864 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RNI-like superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation. Amino acid mutations in COI1 distinctively affect jasmonate-regulated male fertility.CFA-Ile, CFA-Leu, CFA-Val, CFA-Met and CFA-Ala could not inhibit the root length and restoration of fertility in coi1-1 mutants. |
| TAIR Short Description: |
RNI-like superfamily protein |
| TAIR Aliases: |
COI1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1965
|
| Chromosome Location: |
Chr3: 5644593-5646557 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
rapid alkalinization factor 23;(source:Araport11) |
| TAIR Curator Summary: |
Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere. |
| TAIR Short Description: |
rapid alkalinization factor 23 |
| TAIR Aliases: |
ATRALF23, RALF23 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2090
|
| Chromosome Location: |
Chr4: 17155556-17157645 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Lateral root primordium (LRP) protein-like protein;(source:Araport11) |
| TAIR Curator Summary: |
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves. |
| TAIR Short Description: |
Lateral root primordium (LRP) protein-related |
| TAIR Aliases: |
SRS2, STY2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
7249
|
| Chromosome Location: |
Chr5: 7785743-7792991 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Tudor/PWWP/MBT domain-containing protein;(source:Araport11) |
| TAIR Curator Summary: |
Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances AG function. HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Tudor/PWWP/MBT domain-containing protein |
| TAIR Aliases: |
ART1, HUA2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1526
|
| Chromosome Location: |
Chr3: 5669317-5670842 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
translationally controlled tumor protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well. |
| TAIR Short Description: |
translationally controlled tumor protein |
| TAIR Aliases: |
AtTCTP1, TCTP1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4995
|
| Chromosome Location: |
Chr5: 16544333-16549327 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
homolog of Xeroderma pigmentosum complementation group B 2;(source:Araport11) |
| TAIR Curator Summary: |
Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.XPB2 preferentially expressed in developing organs and during the cell cycle. |
| TAIR Short Description: |
homolog of Xeroderma pigmentosum complementation group B 2 |
| TAIR Aliases: |
ATXPB2, XPB2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4920
|
| Chromosome Location: |
Chr5: 16551119-16556038 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
DNA repair helicase XPB1-like protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes XPB1, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
homolog of xeroderma pigmentosum complementation group B 1 |
| TAIR Aliases: |
ATXPB1, XPB1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3657
|
| Chromosome Location: |
Chr5: 5003226-5006882 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Cyclic nucleotide-regulated ion channel family protein;(source:Araport11) |
| TAIR Curator Summary: |
'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens. CNGC2 could be the key step mediating bulk Ca2+ influx into leaf cells after unloading from the vascular and have no direct roles in the leaf development and HR. |
| TAIR Short Description: |
Cyclic nucleotide-regulated ion channel family protein |
| TAIR Aliases: |
ATCNGC2, CNGC2, DND1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
110
|
| Chromosome Location: |
Chr5: 16598796-16598905 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
SNOR108,snoRNA;(source:Araport11) |
| TAIR Curator Summary: |
predicted to encode a C/D box type of snoRNA, also known as Ath-350 (GB: AJ505636). But, the submitted sequence of 110 nucleotides is only part of the 160 nucleotide sequence predicted by Northern blotting. It is assumed that a 5' portion of the gene is missing and its 5' end has not been conclusively mapped. Sequence analysis of this snoRNA suggests that it may not function like other C/D box family members that modify rRNAs or snRNAs. Its true biological target remains unknown. The promoter of this snoRNA has hallmarks of the snRNA promoters targeted by RNA polymerase II, indicating that it might also have a TMG (2,2,7 trimethyguanosine) cap. SnoRNA108 may also play a novel role in ribosome biogenesis (Marker 2002). |
| TAIR Short Description: |
SNOR108; snoRNA |
| TAIR Aliases: |
SNOR108 |
|
•
•
•
•
•
|
| Gene |
| Length: |
107
|
| Chromosome Location: |
Chr1: 10151668-10151774 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
SNOR105 (SMALL NUCLEOLAR RNA 105),snoRNA;(source:Araport11) |
| TAIR Curator Summary: |
predicted to encode a C/D box type of snoRNA, also known as Ath-282 (GB:AJ505633). But, the submitted sequence of 106 nucleotides is only part of the 162 nucleotide sequence predicted by Northern blotting. It is assumed that a 5' portion of the gene is missing and its 5' end has not been conclusively mapped. Sequence analysis of this snoRNA suggests that it may not function like other C/D box family members that modify rRNAs or snRNAs. Its true biological target remains unknown. The promoter of this snoRNA has hallmarks of the snRNA promoters targeted by RNA polymerase II, indicating that it might also have a TMG (2,2,7 trimethyguanosine) cap. SnoRNA105 may also play a novel role in ribosome biogenesis (Marker 2002). Northern blotting reveals that snoRNA105 expression levels are higher in seedlings than in adult plants. |
| TAIR Short Description: |
SNOR105 (SMALL NUCLEOLAR RNA 105); snoRNA |
| TAIR Aliases: |
SNOR105 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2894
|
| Chromosome Location: |
Chr4: 12324758-12327651 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
calcium-dependent protein kinase 6;(source:Araport11) |
| TAIR Curator Summary: |
Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. |
| TAIR Short Description: |
calcium-dependent protein kinase 6 |
| TAIR Aliases: |
AtCDPK6, CDPK6, CPK3 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
350
|
|
•
•
•
•
•
|
| Gene |
| Length: |
3290
|
| Chromosome Location: |
Chr1: 18494029-18497318 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
telomere repeat binding factor 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a telomeric DNA binding protein and Single Myb Histone (SMH) gene family member. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.Mutations in TRB1 and TRB3 enhance the lhp1 mutant phenotype. Triple mutants are more strongly affected than the respective double mutants with lhp1. TRB1 binds non-H3K27me3 target genes predominantly at the transcription start sites and its presence increases the expression of several of these targets, enriched for functions of primary metabolism. At H3K27me3 target genes, TRB1 binding is more distributed across gene bodies and at extended promoter regions, corresponding to an enrichment of putative binding sites "RMCCTAR". At these genes, TRB1 particiaptes in the repression because several direct targets are further upregulated in trb1 lhp1 double mutants as compared to lhp1 mutants. |
| TAIR Short Description: |
telomere repeat binding factor 1 |
| TAIR Aliases: |
ATTRB1, TRB1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4258
|
| Chromosome Location: |
Chr3: 20114488-20118745 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Integrase-type DNA-binding superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. Splice form 3 is the major form expressed in seedlings.Mutations in the C terminal intrinsically disordered region increase the stability of WRI1 and lead to increased oil production. |
| TAIR Short Description: |
Integrase-type DNA-binding superfamily protein |
| TAIR Aliases: |
ASML1, ATWRI1, WRI, WRI1 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
284
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
375
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
330
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
618
|
|
•
•
•
•
•
|
| Gene |
| Length: |
3333
|
| Chromosome Location: |
Chr2: 7516330-7519662 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Calcium-dependent protein kinase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. The protein kinase CPK6 is shown in biochemical assays to be directly activated by elevations in calcium concentrations in the physiological range (Laanements et al., 2013 PlantPhys.; PMID: 23766366). These data correlate with the in vivo function of CPK6 in Ca2+ and ABA activation of S-type anion channels (Mori et al., 2006 PLoS Biol.; PMID: 17032064) and the ability of CPK6 to mediate ABA activation of SLAC1 (Brandt et al., 2012 PNAS; PMID: 22689970). The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Calcium-dependent protein kinase family protein |
| TAIR Aliases: |
ATCDPK3, ATCPK6, CPK6 |
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| Gene |
| Length: |
3608
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| Chromosome Location: |
Chr5: 745421-749028 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
C2H2-like zinc finger protein;(source:Araport11) |
| TAIR Curator Summary: |
JKD is a nuclear-localized putative transcription factor of the BIRDS/IDD C2H2 zinc finger family. JKD and its homologue BIB, restrict SHR movement to a single layer, the endodermis, and delimit tissue boundaries in the root meristem through a process that involves nuclear retention through protein complex formation. JKD mutation leads to periclinal divisions in the cortex, increased cell numbers in the circumference of the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. This effect is enhanced in jkd bib double mutants where tissue boundaries cannot be maintained due to excessive SHR movement. JKD and BIB restrict CYCIND6 expression to cortex and endodermis stem cells to prevent formative divisions in the ground tissue. JKD physically interacts with cell fate determinants SCR and SHR in a cell type specific manner. Native FRET-FLIM analysis showed higher JKD-SCR complex in the endodermis and predominant JKD-SHR in the QC and cortex/endodermis stem cells. In addition, JKD, SCR and SHR form a ternary complex whose conformation is cell type dependent, conformational changes of this complex differentially regulate SCR and WOX5 expression to specify endodermal cell fate and QC function respectively. Its mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
C2H2-like zinc finger protein |
| TAIR Aliases: |
JKD |
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| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
333
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| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
624
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| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
379
|
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•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
306
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| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
341
|
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•
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| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
381
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| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
385
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| mRNA |
| Length: |
2616
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| Chromosome Location: |
Chr1: 30191538-30194605 |
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| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
337
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| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
425
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| Pseudogene |
| Length: |
901
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| Chromosome Location: |
Chr3: 16264312-16265212 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
pseudogene of RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11) |
| TAIR Curator Summary: |
Pseudogene of AT5G03495; nucleotide binding protein |
| TAIR Short Description: |
NULL |
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| mRNA |
| Length: |
1415
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| Chromosome Location: |
Chr4: 477141-479634 |
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| mRNA |
| Length: |
2050
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| Chromosome Location: |
Chr4: 477152-479936 |
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| mRNA |
| Length: |
1756
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| Chromosome Location: |
Chr4: 477152-480028 |
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•
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| mRNA |
| Length: |
1695
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| Chromosome Location: |
Chr4: 18315545-18318226 |
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| mRNA |
| Length: |
1717
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| Chromosome Location: |
Chr4: 18315545-18318226 |
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|
| mRNA |
| Length: |
1646
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| Chromosome Location: |
Chr4: 18315605-18318142 |
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| mRNA |
| Length: |
1623
|
| Chromosome Location: |
Chr1: 26502909-26504619 |
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•
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| mRNA |
| Length: |
1498
|
| Chromosome Location: |
Chr5: 20734136-20736138 |
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| mRNA |
| Length: |
1525
|
| Chromosome Location: |
Chr2: 5687316-5690771 |
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| mRNA |
| Length: |
1852
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| Chromosome Location: |
Chr2: 5687316-5690771 |
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| mRNA |
| Length: |
1132
|
| Chromosome Location: |
Chr2: 5687378-5689900 |
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| mRNA |
| Length: |
1339
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| Chromosome Location: |
Chr2: 5687378-5690795 |
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| mRNA |
| Length: |
1395
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| Chromosome Location: |
Chr2: 5687381-5690771 |
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| mRNA |
| Length: |
1615
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| Chromosome Location: |
Chr2: 5687388-5690780 |
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| mRNA |
| Length: |
1280
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| Chromosome Location: |
Chr2: 5687815-5690771 |
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| mRNA |
| Length: |
2633
|
| Chromosome Location: |
Chr2: 19057999-19061492 |
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