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Search results 501 to 600 out of 815 for Genome-wide association study

Category restricted to Generif (x)

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Category: Generif
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Type Details Score
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that HY5 directly binds to the MYBD promoter and that although MYBD and MYBH are homologs, they act in opposite ways during plant photomorphogenesis.
Organism: A. thaliana
Gene: MYBL2
PubMed Id: 26576746
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study shows that the microtubule-severing protein katanin is required to orchestrate growth between neighboring cells by providing cells with the ability to respond efficiently to mechanical stress.
Organism: A. thaliana
Gene: ERH3
PubMed Id: 22500806
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that Arabidopsis (Arabidopsis thaliana) branching is modified by both varying photosynthetic photon flux density and phyB status and that significant interactions occur between these variables.
Organism: A. thaliana
Gene: PHYB
PubMed Id: 21726239
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The findings of the present study revealed the structure-function relationship of AtNRAMP3 and metal transport activity and selectivity, which may possibly be applied to other plant NRAMP proteins
Organism: A. thaliana
Gene: NRAMP3
PubMed Id: 29748478
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggested that, Since TZF1 can bind both DNA and RNA in vitro, it raises the possibility that TZF1 might be involved in DNA and/or RNA regulation.
Organism: A. thaliana
Gene: ATCTH
PubMed Id: 19897605
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study pinpoints the specificity of MAPK regulation by the different MAPK phosphatases AP2C1 and MKP1, which control the same MAPK substrates, nevertheless leading to different downstream events.
Organism: A. thaliana
Gene: AT2G30020
PubMed Id: 28062592
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports that At3g10550, encodes a phosphoinositide 3'-phosphatase related to the animal myotubularins (AtMTM1); identifed an overlapping set of genes co-regulated by ATX1 and AtMTM under drought conditions
Organism: A. thaliana
Gene: MTM1
PubMed Id: 19901554
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study provides evidence that UGT71B6, an ABA uridine diphosphate glucosyltransferase (UGT), and its two closely related homologs, UGT71B7 and UGT71B8, play crucial roles in abscissic acid homeostasis.
Organism: A. thaliana
Gene: UGT71B6
PubMed Id: 24676855
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study provides evidence that UGT71B6, an ABA uridine diphosphate glucosyltransferase (UGT), and its two closely related homologs, UGT71B7 and UGT71B8, play crucial roles in abscissic acid homeostasis.[UGT71B7]
Organism: A. thaliana
Gene: AT3G21790
PubMed Id: 24676855
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study provides evidence that UGT71B6, an ABA uridine diphosphate glucosyltransferase (UGT), and its two closely related homologs, UGT71B7 and UGT71B8, play crucial roles in abscissic acid homeostasis.
Organism: A. thaliana
Gene: UGT71B8
PubMed Id: 24676855
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study pinpoints the specificity of MAPK regulation by the different MAPK phosphatases AP2C1 and MKP1, which control the same MAPK substrates, nevertheless leading to different downstream events.
Organism: A. thaliana
Gene: MKP1
PubMed Id: 28062592
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study uncovers BAM3 as the CLE45 receptor in the root and biochemically map its peptide binding surface; CRN stabilizes BAM3 expression and is required for BAM3-mediated CLE45 signaling
Organism: A. thaliana
Gene: BAM3
PubMed Id: 28607033
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study also provides new insights that CaMBP may play a critical role in the cross talk of multiple signaling pathways in the context of plant defense processes.
Organism: A. thaliana
Gene: EDA39
PubMed Id: 31548265
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study also provides new insights that CaMBP may play a critical role in the cross talk of multiple signaling pathways in the context of plant defense processes.
Organism: A. thaliana
Gene: CAT2
PubMed Id: 31548265
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggested that the CLV3 signal is perceived by a tetrameric CLV2/CRN complex and a CLV1 homodimer that localize to the PM and can interact via CRN.
Organism: A. thaliana
Gene: CRN
PubMed Id: 19933383
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study demonstrates a new function for pectin methylesterase, i.e., ribosome-inactivating protein activity, and discusses the possible role of a protein's conformational changes corresponding to its dual enzymatic activity.
Organism: A. thaliana
Gene: PMEPCRA
PubMed Id: 18222123
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reveals that NRT1.5 plays a crucial role in K(+) translocation from root to shoot and is also involved in the coordination of potassium/nitrates distribution in plants.
Organism: A. thaliana
Gene: NRT1.5
PubMed Id: 28739644
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study supports ABA2 as a late expression gene that might have a fine-tuning function in mediating abscisic acid biosynthesis through primary metabolic changes in response to stress.
Organism: A. thaliana
Gene: ABA2
PubMed Id: 17189333
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study shows that NHX5 and NHX6 are necessary for processing of the predominant seed storage proteins, and also influence the processing and activity of a vacuolar processing enzyme.
Organism: A. thaliana
Gene: NHX5
PubMed Id: 26416852
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggested that the CLV3 signal is perceived by a tetrameric CLV2/CRN complex and a CLV1 homodimer that localize to the PM and can interact via CRN.
Organism: A. thaliana
Gene: CLV2
PubMed Id: 19933383
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study represents a thorough investigation showing that retroposition can play an important role in the evolution of a plant gene family whose members do not encode mobile elements
Organism: A. thaliana
Gene: SKP1
PubMed Id: 17470057
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study shows that NHX5 and NHX6 are necessary for processing of the predominant seed storage proteins, and also influence the processing and activity of a vacuolar processing enzyme.
Organism: A. thaliana
Gene: NHX6
PubMed Id: 26416852
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study demonstrates that the dimeric form of the C-terminal module plays important signaling roles by targeting PHYB to subnuclear photobodies and interacting with PIF3 to trigger its degradation.
Organism: A. thaliana
Gene: PHYB
PubMed Id: 29199270
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study has revealed a unique regulatory circuit of direct ubiquitination and turnover of FLS2 by BAK1-mediated phosphorylation and recruitment of specific E3 ligases (PUB12,PUB13) for attenuation of immune signaling
Organism: A. thaliana
Gene: PUB12
PubMed Id: 21680842
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A crystallization and preliminary X-ray diffraction study of the Arabidopsis thaliana proliferating cell nuclear antigen (PCNA2) alone and in a complex with a PIP-box peptide from Flap endonuclease 1.
Organism: A. thaliana
Gene: PCNA2
PubMed Id: 32188236
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identifies TAX1 as the first plant signalling peptide influencing lateral organ separation and implicates the existence of a peptide signal cascade regulating this process in Arabidopsis. [TAX1]
Organism: A. thaliana
Gene: AT2G31090
PubMed Id: 26071531
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study has revealed a unique regulatory circuit of direct ubiquitination and turnover of FLS2 by BAK1-mediated phosphorylation and recruitment of specific E3 ligases (PUB12,PUB13) for attenuation of immune signaling
Organism: A. thaliana
Gene: PUB13
PubMed Id: 21680842
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study finds that hundreds of genes are upregulated in response to gamma-irradiation, and that the induction of virtually all of these genes is dependent on ATM, but not ATR.
Organism: A. thaliana
Gene: ATM
PubMed Id: 17227549
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study uncovered AtNAP1 proteins as positive regulators and AtNAP1;3T as a negative regulator in ABA signaling pathways, providing a novel link of chromatin remodeling to hormonal and stress responses.
Organism: A. thaliana
Gene: ABCI8
PubMed Id: 19825649
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reveals the essential functions of C-repeat binding factors (CBF) in chilling stress response and cold acclimation, as well as defines a set of genes as CBF regulon.
Organism: A. thaliana
Gene: CBF2
PubMed Id: 27353960
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reveals the essential functions of C-repeat binding factors (CBF) in chilling stress response and cold acclimation, as well as defines a set of genes as CBF regulon.
Organism: A. thaliana
Gene: DREB1A
PubMed Id: 27353960
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reveals the essential functions of C-repeat binding factors (CBF) in chilling stress response and cold acclimation, as well as defines a set of genes as CBF regulon.
Organism: A. thaliana
Gene: CBF1
PubMed Id: 27353960
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study has revealed a unique regulatory circuit of direct ubiquitination and turnover of FLS2 by BAK1-mediated phosphorylation and recruitment of specific E3 ligases (PUB12,PUB13) for attenuation of immune signaling
Organism: A. thaliana
Gene: BAK1
PubMed Id: 21680842
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identifies a link between plant perception of biotic threats by BAK1, cellular calcium entry mediated by GLRs, and intracellular calcium release by TPC1 during a biologically relevant interaction.
Organism: A. thaliana
Gene: BAK1
PubMed Id: 28559475
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study has revealed a unique regulatory circuit of direct ubiquitination and turnover of FLS2 by BAK1-mediated phosphorylation and recruitment of specific E3 ligases (PUB12,PUB13) for attenuation of immune signaling
Organism: A. thaliana
Gene: FLS2
PubMed Id: 21680842
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study presents data and analyses of sequence diversity of MEA in self-fertilizing and outcrossing Arabidopsis and its relatives, to help clarify the form of selection acting on this gene.
Organism: A. thaliana
Gene: MEA
PubMed Id: 19126870
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study identified the highly conserved FANCM helicase, as a major factor limiting meiotic crossover(CO)formation; FANCM is a key factor imposing an upper limit on the number of meiotic COs
Organism: A. thaliana
Gene: FANCM
PubMed Id: 22723424
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study show that transcripts of both genes are present throughout the life cycle of Arabidopsis thaliana plants with NIA1 being predominantly active in leaves and NIA2 in meristematic tissues.
Organism: A. thaliana
Gene: NIA2
PubMed Id: 31438763
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study demonstrates the complexity and functional significance of post-translational DNA damage signalling responses in plants and establish the requirement of H2AX phosphorylation for plant survival under genotoxic stress.
Organism: A. thaliana
Gene: GAMMA-H2AX
PubMed Id: 31410901
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that Hsp101 expression is evolvable in natural populations.Hsp101 is primarily an emergency high-temperature tolerance mechanism, since expression levels are lower in low-latitude populations from warmer climates.
Organism: A. thaliana
Gene: HSP101
PubMed Id: 18321256
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study show that transcripts of both genes are present throughout the life cycle of Arabidopsis thaliana plants with NIA1 being predominantly active in leaves and NIA2 in meristematic tissues.
Organism: A. thaliana
Gene: NIA1
PubMed Id: 31438763
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study uncovers BAM3 as the CLE45 receptor in the root and biochemically map its peptide binding surface; CRN stabilizes BAM3 expression and thus is required for BAM3-mediated CLE45 signaling
Organism: A. thaliana
Gene: CLE45
PubMed Id: 28607033
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study demonstrates tightly preserved role of homeologs and natural variants of MIR172 family in mediating flowering in Brassicas and suggests their deployment for introgression of early flowering trait.
Organism: A. thaliana
Gene: MIR172A
PubMed Id: 29752548
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The purpose of the present study was to determine the subcellular localization of this novel plant enzyme. Immunogold electron-microscopic analysis showed the gold labels nearly exclusively in the peroxisomes. T
Organism: A. thaliana
Gene: SOX
PubMed Id: 15653809
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study collectively suggest that the presence of Pgb2 in the cytoplasm, but not in the nucleus, phenocopies the effects of Pgb2 mutation in inducing somatic embryogenesis.[Pgb2]
Organism: A. thaliana
Gene: HB2
PubMed Id: 28199692
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study provides the molecular evidence showing that the BRCA2-RAD51 complex, known for its function in HR, also plays a direct and specific role in transcription regulation during plant immune responses.
Organism: A. thaliana
Gene: BRCA2(IV)
PubMed Id: 21149701
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study provides an insight into the molecular mechanism for understanding how the CHD3-like chromatin remodeling protein MOM1 cooperates with the SUMO E3 ligase-like proteins to regulate transcriptional silencing. [SUMO1]
Organism: A. thaliana
Gene: SUMO1
PubMed Id: 30092097
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identifies gamma-glutamyltransferase 3 as catalyzing the obligate initial step in glutathione conjugate metabolism, and suggests that it has an important role in protecting plants from some xenobiotic chemicals.
Organism: A. thaliana
Gene: GGT4
PubMed Id: 17316176
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study has identified a unique bidirectional promoter capable of driving gene expression in Arabidopsis thaliana, and showed for the first time, that SERAT3;2 promoter is nested in the IDH-III promoter.
Organism: A. thaliana
Gene: SERAT3;2
PubMed Id: 28585118
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study has identified a unique bidirectional promoter capable of driving gene expression in Arabidopsis thaliana, and showed for the first time, that SERAT3;2 promoter is nested in the IDH-III promoter.
Organism: A. thaliana
Gene: IDH-III
PubMed Id: 28585118
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study provides the molecular evidence showing that the BRCA2-RAD51 complex, known for its function in HR, also plays a direct and specific role in transcription regulation during plant immune responses.
Organism: A. thaliana
Gene: BRCA2B
PubMed Id: 21149701
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study reports the structure of the DUF283 domain from the Arabidopsis thaliana DCL4; the DUF283 domain adopts an alpha-beta-beta-beta-alpha topology and resembles the structural similarity to the double-stranded RNA-binding domain.
Organism: A. thaliana
Gene: DCL4
PubMed Id: 20106953
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study provides the molecular evidence showing that the BRCA2-RAD51 complex, known for its function in HR, also plays a direct and specific role in transcription regulation during plant immune responses.
Organism: A. thaliana
Gene: RAD51
PubMed Id: 21149701
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study indicated that a chloroplast Clp protease is involved in regulating chlorophyll b biosynthesis through the destabilization of chlorophyllide a oxygenase protein in response to the accumulation of chlorophyll b.
Organism: A. thaliana
Gene: CLPC1
PubMed Id: 17291312
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study found that a unique domain in basic helix-loop-helix (bHLH) stomatal initiating factor, SPEECHLESS, renders it a mitogen-activated protein kinase phosphorylation target in vitro and modulates its function in vivo
Organism: A. thaliana
Gene: SPCH
PubMed Id: 19008449
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study provides an insight into the molecular mechanism for understanding how the CHD3-like chromatin remodeling protein MOM1 cooperates with the SUMO E3 ligase-like proteins to regulate transcriptional silencing. [SUMO2]
Organism: A. thaliana
Gene: SUMO2
PubMed Id: 30092097
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study identifed CYP81F2 as the gene underlying Indole Glucosinolate Modifier1 (IGM1), a metabolic QTL for accumulation of 2 modified indole glucosinolates; also CYP81F2 contributes to defense against green peach aphid
Organism: A. thaliana
Gene: CYP81F2
PubMed Id: 19293369
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The hda15 mutation resulted in upregulation of many warm temperature-responsive as well as metabolic genes at 20 and 27 degrees C. HDA15 is associated with thermosensory mark genes at 20 degrees C and that the association is decreased after shifting to 27 degrees C, indicating that HDA15 is a direct repressor of plant thermal-responsive genes at normal temperature.
Organism: A. thaliana
Gene: HDA15
PubMed Id: 31400169
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: the association of D6PK with the basal plasma membrane and PIN-FORMED auxin efflux carriers is dependent on the phospholipid composition of the plasma membrane as well as on the phosphatidylinositol phosphate 5-kinases PIP5K1 and PIP5K2 in epidermis cells of the primary root. D6PK directly binds polyacidic phospholipids through a polybasic lysine-rich motif in the middle domain of the kinase.
Organism: A. thaliana
Gene: D6PK
PubMed Id: 27836964
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study describes initial functional characterization of XLG1, XLG2 & XZLG3 genes & reveals a role for XLG proteins in the regulation of root growth and seed germination by sugars and phytohormones
Organism: A. thaliana
Gene: XLG1
PubMed Id: 17999646
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: our study indicates that BBX21 coordinates with HY5 and ABI5 on the ABI5 promoter and that these transcriptional regulators work in concert to integrate light and ABA signaling in Arabidopsis thaliana.
Organism: A. thaliana
Gene: ABI5
PubMed Id: 24586210
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that the spatial and temporal expression patterns of PDX1.1 and PDX1.3, investigated at the transcript and protein level, largely overlap, but PDX1.3 is more abundant than PDX1.1. [PDX1.1]
Organism: A. thaliana
Gene: PDX1.1
PubMed Id: 17227548
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study conclude that the ATFER4 ferritin role in counteracting the environmental or developmental oxidative conditions in Arabidopsis plants is ancillary to that of the other isoforms, regardless of its mitochondrial localization.
Organism: A. thaliana
Gene: FER4
PubMed Id: 19959254
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: KN1 trafficking requires chaperonin complex; study shows chaperonins are essential for cell-to-cell trafficking of subset of mobile transcription factors and demonstrates importance of chaperonin-dependent protein trafficking for plant stem cell function
Organism: A. thaliana
Gene: AT3G03960
PubMed Id: 21868675
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study presents a genetic characterization of the role of clathrin in endocytosis and auxin-mediated plant development; data demonstrate a fundamental role for clathrin function in cell polarity, growth, patterning, and organogenesis
Organism: A. thaliana
Gene: AT3G08530
PubMed Id: 21551390
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study defines a switch in the regulatory activity of RVE8-LNK interaction, from a synergic coactivating role of evening-expressed clock genes to a repressive antagonistic function modulating anthocyanin biosynthesis around midday.
Organism: A. thaliana
Gene: RVE8
PubMed Id: 25848001
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study presents a genetic characterization of the role of clathrin in endocytosis and auxin-mediated plant development; data demonstrate a fundamental role for clathrin function in cell polarity, growth, patterning, and organogenesis
Organism: A. thaliana
Gene: AT3G11130
PubMed Id: 21551390
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: and function. RHD3 was initially identified as a gene involved in root hair development. This study uncovered a new physiological function of RHD3 in nitrogen starvation-induced anthocyanin accumulation and ethylene homeostasis.
Organism: A. thaliana
Gene: RHD3
PubMed Id: 25494721
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identified a host factor, RAD54, in a screen for replication initiator protein (Rep)-interacting partners and observed its role in DNA replication of the geminivirus mungbean yellow mosaic India virus (MYMIV).
Organism: A. thaliana
Gene: RAD54
PubMed Id: 22171001
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study highlights distinct functions for different families of histone chaperones in the maintenance of genome stability and establishes a crucial function for NAP1 family histone chaperones in somatic homologous recombination.
Organism: A. thaliana
Gene: NAP1;1
PubMed Id: 22534127
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study indicates that ACA10/8 and BON1 physically interact on plasma membrane and function in the generation of cytosol calcium signatures that are critical for stomatal movement and impact plant immunity.
Organism: A. thaliana
Gene: ACA10
PubMed Id: 28701352
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study describes initial functional characterization of XLG1, XLG2 & XZLG3 genes & reveals a role for XLG proteins in the regulation of root growth and seed germination by sugars and phytohormones
Organism: A. thaliana
Gene: XLG2
PubMed Id: 17999646
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports the physical interaction of an Arabidopsis POT1 protein, POT1A (At5g05210), with an N-terminal peptide of the catalytic subunit of the telomerase TERT encoded by a 5' mRNA splicing variant
Organism: A. thaliana
Gene: AT5G05210
PubMed Id: 17911168
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identified and characterized a mutant gene named erecta mRNA under-expressed (emu)at At5g09860 that leads to the defective mRNA accumulation of ERECTA, a developmental regulator in the model plant Arabidopsis thaliana.
Organism: A. thaliana
Gene: THO1
PubMed Id: 20668032
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study has aided in the understanding of Flowering Locus C's role in the clock, as it reveals that the network affecting circadian timing is partially overlapping with the floral-regulatory network.
Organism: A. thaliana
Gene: FLC
PubMed Id: 16737527
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports the physical interaction of an Arabidopsis POT1 protein, POT1A (At5g05210), with an N-terminal peptide of the catalytic subunit of the telomerase TERT encoded by a 5' mRNA splicing variant
Organism: A. thaliana
Gene: TERT
PubMed Id: 17911168
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that the spatial and temporal expression patterns of PDX1.1 and PDX1.3, investigated at the transcript and protein level, largely overlap, but PDX1.3 is more abundant than PDX1.1. [PDX1.3]
Organism: A. thaliana
Gene: RSR4
PubMed Id: 17227548
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study indicates that ACA10/8 and BON1 physically interact on plasma membrane and function in the generation of cytosol calcium signatures that are critical for stomatal movement and impact plant immunity.
Organism: A. thaliana
Gene: ACA8
PubMed Id: 28701352
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study indicates that ACA10/8 and BON1 physically interact on plasma membrane and function in the generation of cytosol calcium signatures that are critical for stomatal movement and impact plant immunity.
Organism: A. thaliana
Gene: BON1
PubMed Id: 28701352
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study defines a switch in the regulatory activity of RVE8-LNK interaction, from a synergic coactivating role of evening-expressed clock genes to a repressive antagonistic function modulating anthocyanin biosynthesis around midday.[LNK1]
Organism: A. thaliana
Gene: AT5G64170
PubMed Id: 25848001
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Our study points to a key role for the cytosol in protecting the chloroplast during light stress and provides evidence for cross-compartment protection of thylakoid and stromal/mitochondrial APXs by cytosolic APX1.
Organism: A. thaliana
Gene: APX1
PubMed Id: 15608336
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: TPL can interact with IAA12/BODENLOS through an ETHYLENE RESPONSE FACTOR-associated amphiphilic repression motif; study shows TPL is a transcriptional co-repressor & furthers understanding of how auxin regulates transcription during plant development
Organism: A. thaliana
Gene: TPL
PubMed Id: 18258861
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: TOPLESS (TPL) can interact with IAA12/BODENLOS through an ETHYLENE RESPONSE FACTOR-associated amphiphilic repression motif; study shows TPL is a transcriptional co-repressor & furthers understanding of how auxin regulates transcription during development
Organism: A. thaliana
Gene: IAA12
PubMed Id: 18258861
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports the discovery of a basic helix-loop-helix (bHLH) transcription factor called RSL4 (ROOT HAIR DEFECTIVE 6-LIKE 4) that is sufficient to promote postmitotic cell growth in Arabidopsis thaliana root-hair cells
Organism: A. thaliana
Gene: RSL4
PubMed Id: 20139979
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggests that UFO and LFY are jointly required in the inflorescence meristem to both promote floral meristem development and inhibit, in a non-cell autonomous manner, growth of the bract.
Organism: A. thaliana
Gene: UFO
PubMed Id: 16244866
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study describes initial functional characterization of XLG1, XLG2 & XZLG3 genes & reveals a role for XLG proteins in the regulation of root growth and seed germination by sugars and phytohormones
Organism: A. thaliana
Gene: XLG3
PubMed Id: 17999646
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identifies BDG as an important component of the cutin biosynthesis machinery in Arabidopsis. Using BDG, cutin can be greatly modified without altering the cuticular water barrier properties and transpiration.[BDG]
Organism: A. thaliana
Gene: BDG1
PubMed Id: 26990896
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study conclude that thermoperiodic control of floral transition is associated with modulation of the diurnal expression patterns of FT, with timing of temperature alteration being important rather than average daily temperature.
Organism: A. thaliana
Gene: FT
PubMed Id: 28028164
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study identified a nuclear gene (OTP43) absolutely required for trans-splicing of intron 1 (and only intron 1) of Arabidopsis thaliana nad1 transcripts; this gene encodes a previously uncharacterized pentatricopeptide repeat protein
Organism: A. thaliana
Gene: OTP43
PubMed Id: 17965268
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: our study indicates that BBX21 coordinates with HY5 and ABI5 on the ABI5 promoter and that these transcriptional regulators work in concert to integrate light and ABA signaling in Arabidopsis thaliana.
Organism: A. thaliana
Gene: BBX21
PubMed Id: 24586210
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identified a novel mutant gene in Arabidopsis, ALE2, which is associated with various epidermal defects, including disorganization of epidermis-related tissues, defects in the leaf cuticle and the fusion of organs. [ALE2]
Organism: A. thaliana
Gene: ALE2
PubMed Id: 17376810
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study provides evidence that CLV3 signaling in meristems mediates both cell fate specification and growth control through inhibition of cell division rate, as well as that the processes can be temporally uncoupled
Organism: A. thaliana
Gene: CLV3
PubMed Id: 16210497
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study suggests that CSU4 acts as a negative regulator of CCA1 via physically associating with CCA1, which in turn, likely serves to repress expression of CCA1 and PIF4 to promote photomorphogenesis.
Organism: A. thaliana
Gene: PIF4
PubMed Id: 30352855
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggests that the combination of light regulation of CCA1 transcription and CCA1 messenger RNA degradation is important for ensuring that the Arabidopsis circadian oscillator is accurately entrained by environmental changes.
Organism: A. thaliana
Gene: CCA1
PubMed Id: 17873091
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study suggests that CSU4 acts as a negative regulator of CCA1 via physically associating with CCA1, which in turn, likely serves to repress expression of CCA1 and PIF4 to promote photomorphogenesis.
Organism: A. thaliana
Gene: CCA1
PubMed Id: 30352855
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The present study of BOR1 and NIP5;1 demonstrates the importance of selective endocytic trafficking in polar localization and degradation of plant nutrient transporters for radial transport and homeostasis of plant mineral nutrients.
Organism: A. thaliana
Gene: BOR1
PubMed Id: 20194745
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports that pollen tubes of anx1/anx2 mutants ruptured before arriving at the egg apparatus, suggesting that ANX1(At3g04690) and ANX2(At5g28680)are male factors controlling pollen tube behavior by directing rupture at proper timing
Organism: A. thaliana
Gene: ANX1
PubMed Id: 19646876
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The ced1 (for 9-cis epoxycarotenoid dioxygenase defective 1) mutant isolated in this study showed markedly reduced expression of NCED3 in response to osmotic stress (polyethylene glycol) treatments compared with the wild type.
Organism: A. thaliana
Gene: NCED3
PubMed Id: 21610183
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study demonstrates a specific role for QUA1 in the development of vascular tissue in rapidly elongating inflorescence stems and supports a role of QUA1 in pectin and hemicellulose cell wall synthesis.
Organism: A. thaliana
Gene: QUA1
PubMed Id: 16059719
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that a defect in the ABC subfamily B auxin transporter ABCB19 suppresses the inhibitory effects of N-1-naphthylphthalamic acid on hypocotyl phototropism and gravitropism, but not on hypocotyl elongation. [AtABCB19]
Organism: A. thaliana
Gene: ABCB19
PubMed Id: 18556728
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