help  | faq  | software  | BAR

Search our database by keyword

- or -

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, pathways, authors, ontology terms, etc. (e.g. eve, embryo, zen, allele)
  • Use OR to search for either of two terms (e.g. fly OR drosophila) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. dros* for partial matches or fly AND NOT embryo to exclude a term

Search results 401 to 500 out of 815 for Genome-wide association study

Category restricted to Generif (x)

<< First    < Previous  |  Next >    Last >>
0.142s

Categories

Category: Generif
« show all
Type Details Score
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study demonstrated that expression derived from the thi1 promoter is detected early on during development and continues throughout the plant's life cycle.
Organism: A. thaliana
Gene: TH1
PubMed Id: 15897230
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study concludes that CENH3 function in A. thaliana, an organism with large tandem repeat centromeres, has stringent requirements for functional complementation in mitosis
Organism: A. thaliana
Gene: HTR12
PubMed Id: 20628040
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study suggests that CIPK9 differentially phosphorylates interacting CBLs, and furthermore, the kinase activity of CIPK9 is also differentially regulated by specific interacting CBLs.
Organism: A. thaliana
Gene: CIPK9
PubMed Id: 30054434
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reveals that MYC2 and GBF1 colocalize and physically interact in the nucleus. This interaction requires the N-terminal domain of each protein.
Organism: A. thaliana
Gene: MYC2
PubMed Id: 26047210
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: In order to understand the characteristics of plant CBS domain-containing proteins, structural study of the cystathionine beta-synthase domain-containing protein CDCP2 has been initiated.
Organism: A. thaliana
Gene: AT1G69800
PubMed Id: 18765915
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reports a crystal structure of the extracellular LRR domain of PEPR1 (PEPR1LRR) in complex with AtPep1, a 23-amino acid endogenous peptide.
Organism: A. thaliana
Gene: PEPR1
PubMed Id: 25475059
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: In order to understand the characteristics of plant CBS domain-containing proteins, structural study of the cystathionine beta-synthase domain-containing protein CDCP2 has been initiated.
Organism: A. thaliana
Gene: CBSX4
PubMed Id: 18765915
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study has identified three genes (At1g10747, At1g10745, and At1g10717) that were exclusively expressed in ovule embryo sacs and in early developing endosperms.
Organism: A. thaliana
Gene: AT1G10717
PubMed Id: 24723605
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study has identified three genes (At1g10747, At1g10745, and At1g10717) that were exclusively expressed in ovule embryo sacs and in early developing endosperms.
Organism: A. thaliana
Gene: AT1G10745
PubMed Id: 24723605
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study has identified three genes (At1g10747, At1g10745, and At1g10717) that were exclusively expressed in ovule embryo sacs and in early developing endosperms.
Organism: A. thaliana
Gene: AT1G10747
PubMed Id: 24723605
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggested that a balanced PGR5 level is required for efficient regulation of the rate of antimycin A-sensitive photosystem I cyclic electron transport.
Organism: A. thaliana
Gene: PGR5
PubMed Id: 17913767
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study suggests that ABI4 is a key factor that regulates primary seed dormancy by mediating the balance between abscisic acid and gibberellins biogenesis.
Organism: A. thaliana
Gene: ABI4
PubMed Id: 23818868
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows that the overexpression of ATG8 genes provides beneficial effects on N management at the whole-plant level without affecting yield or plant biomass.
Organism: A. thaliana
Gene: ATG8E
PubMed Id: 30407574
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study revealed the molecular function of LBD18 as a specific DNA-binding transcription factor that activates EXP14 expression by directly binding to its promoter.
Organism: A. thaliana
Gene: LBD18
PubMed Id: 22974309
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study demonstrated a light-entrained circadian clock regulates ethylene release from unstressed, wild-type Arabidopsis (Arabidopsis thaliana) seedlings, with a peak in the mid-subjective day.
Organism: A. thaliana
Gene: CCA1
PubMed Id: 15516515
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study demonstrates an important role of FHY3 and FAR1 in regulating plant immunity, through integrating chlorophyll biosynthesis and the salicylic acid signaling pathway.
Organism: A. thaliana
Gene: FHY3
PubMed Id: 25989254
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study examined the role of ABSCISIC ACID INSENSITIVE3 (ABI3), FUSCA3 (FUS3) and LEAFY COTYLEDON2 (LEC2), in the production of seed reserves in Arabidopsis.
Organism: A. thaliana
Gene: ABI3
PubMed Id: 25840088
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study examined the role of ABSCISIC ACID INSENSITIVE3 (ABI3), FUSCA3 (FUS3) and LEAFY COTYLEDON2 (LEC2), in the production of seed reserves in Arabidopsis.
Organism: A. thaliana
Gene: FUS3
PubMed Id: 25840088
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study provides evidence for a mechanism whereby the transcriptional regulators SAC51 and TCP20 antagonistically regulate the expression of four subgroup Ib bHLH genes.
Organism: A. thaliana
Gene: TCP20
PubMed Id: 24549883
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows that the overexpression of ATG8 genes provides beneficial effects on N management at the whole-plant level without affecting yield or plant biomass.
Organism: A. thaliana
Gene: ATG8G
PubMed Id: 30407574
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The first (to our knowledge) femtosecond transient absorption study on the light-harvesting pigment-protein complexes CP26 (Lhcb5) and CP24 (Lhcb6) of photosystem II, is reported.
Organism: A. thaliana
Gene: LHCB5
PubMed Id: 21156149
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study demonstrates an important role of FHY3 and FAR1 in regulating plant immunity, through integrating chlorophyll biosynthesis and the salicylic acid signaling pathway.
Organism: A. thaliana
Gene: FAR1
PubMed Id: 25989254
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study suggest that GASSHO1 and GASSHO2 genes are essential for the formation of a normal epidermal surface during embryogenesis.[GASSHO1] [GSO1]
Organism: A. thaliana
Gene: GSO1
PubMed Id: 18088309
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study suggested that motor impairments in DYT1 KI animals only exhibit when the sensory stimuli are strongly altered during performance.
Organism: A. thaliana
Gene: DYT1
PubMed Id: 27769743
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows that the overexpression of ATG8 genes provides beneficial effects on N management at the whole-plant level without affecting yield or plant biomass.
Organism: A. thaliana
Gene: APG8A
PubMed Id: 30407574
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study demonstrated that the MKK1 signalling pathway modulates the expression of genes responding to elicitors and plays an important role in pathogen defence.
Organism: A. thaliana
Gene: MEK1
PubMed Id: 17059410
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study demonstrates that auxin promotes interdigitated leaf epidermal pavement cell expansion by coordinately activating the antagonistic ROP2 and ROP6 pathways in an ABP1-dependent manner.
Organism: A. thaliana
Gene: RAC3
PubMed Id: 20887895
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study identified a novel bona fide SUMO protease, ASP1, which positively regulates transition to flowering at least partly by repressing FLC protein stability.
Organism: A. thaliana
Gene: FLC
PubMed Id: 27925396
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that overexpression of Myb113 or Myb114 results in substantial increases in pigment production, and that pigment production remains TTG1- and bHLH-dependent.
Organism: A. thaliana
Gene: TTG1
PubMed Id: 18036197
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study suggest that GASSHO1 and GASSHO2 genes are essential for the formation of a normal epidermal surface during embryogenesis.[GASSHO2] [GSO2]
Organism: A. thaliana
Gene: GSO2
PubMed Id: 18088309
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study revealed the molecular function of LBD18 as a specific DNA-binding transcription factor that activates EXP14 expression by directly binding to its promoter.
Organism: A. thaliana
Gene: EXPA14
PubMed Id: 22974309
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study demonstrated a light-entrained circadian clock regulates ethylene release from unstressed, wild-type Arabidopsis (Arabidopsis thaliana) seedlings, with a peak in the mid-subjective day.
Organism: A. thaliana
Gene: TOC1
PubMed Id: 15516515
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study delineates a TDIF-TDR-BIN2 signalling cascade that controls regulation of ARF and AUX/IAA interaction independent of auxin perception during lateral root development. [TDR]
Organism: A. thaliana
Gene: PXY
PubMed Id: 24362628
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: conclude from this study that posttranscriptional regulation of NRT2.1 and/or NAR2.1 plays a predominant role in the control of the NO(3)(-) HATS in Arabidopsis
Organism: A. thaliana
Gene: NRT2:1
PubMed Id: 22158677
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study identified a novel bona fide SUMO protease, ASP1, which positively regulates transition to flowering at least partly by repressing FLC protein stability.[ASP1]
Organism: A. thaliana
Gene: AT1G09730
PubMed Id: 27925396
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The first (to our knowledge) femtosecond transient absorption study on the light-harvesting pigment-protein complexes CP26 (Lhcb5) and CP24 (Lhcb6) of photosystem II, is reported.
Organism: A. thaliana
Gene: LHCB6
PubMed Id: 21156149
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study demonstrates that auxin promotes interdigitated leaf epidermal pavement cell expansion by coordinately activating the antagonistic ROP2 and ROP6 pathways in an ABP1-dependent manner.
Organism: A. thaliana
Gene: ROP2
PubMed Id: 20887895
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggests that the host proteasome pathway is, at least partially, responsible for the degradation of CAT3, which is manifested in CMV-infected tissues.
Organism: A. thaliana
Gene: CAT3
PubMed Id: 27659495
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study examined the role of ABSCISIC ACID INSENSITIVE3 (ABI3), FUSCA3 (FUS3) and LEAFY COTYLEDON2 (LEC2), in the production of seed reserves in Arabidopsis.
Organism: A. thaliana
Gene: LEC2
PubMed Id: 25840088
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study shows that 4E02 removes RD21A from its defense-inducing pathway and repurposes this enzyme by targeting the active protease to different cell compartments.
Organism: A. thaliana
Gene: RD21A
PubMed Id: 30801789
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that overexpression of Myb113 or Myb114 results in substantial increases in pigment production, and that pigment production remains TTG1- and bHLH-dependent.
Organism: A. thaliana
Gene: MYB113
PubMed Id: 18036197
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that overexpression of Myb113 or Myb114 results in substantial increases in pigment production, and that pigment production remains TTG1- and bHLH-dependent.
Organism: A. thaliana
Gene: MYB114
PubMed Id: 18036197
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study characterized and cloned an Arabidopsis gene, AS1/2 ENHANCER7 (AE7), which is required for both leaf adaxial-abaxial polarity formation and normal cell proliferation. [AE7]
Organism: A. thaliana
Gene: AE7
PubMed Id: 21070412
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study reveals a daytime PHYB-mediated thermosensing mechanism, in which HEMERA acts as a necessary activator for PIF4-dependent induction of temperature-responsive genes and PIF4 accumulation.
Organism: A. thaliana
Gene: PHYB
PubMed Id: 30635559
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identified Arabidopsis miR778, a Pi-responsive miRNA, and its target gene Su(var) 3-9 homologs 6 (SUVH6) encoding a histone H3 lysine 9 (H3K9) methyltransferase.
Organism: A. thaliana
Gene: SUVH6
PubMed Id: 26259194
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study indicate that HsfA2 is a key regulator in the induction of the defence system under several types of environmental stress.
Organism: A. thaliana
Gene: HSFA2
PubMed Id: 17059409
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Our study provided genetic evidence for the first time that, copper ions necessary for ethylene receptor biogenesis and signaling are transported from ATX1 to RAN1.
Organism: A. thaliana
Gene: ATX1
PubMed Id: 28388654
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study reveals a daytime PHYB-mediated thermosensing mechanism, in which HEMERA acts as a necessary activator for PIF4-dependent induction of temperature-responsive genes and PIF4 accumulation.
Organism: A. thaliana
Gene: PTAC12
PubMed Id: 30635559
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study reveals a daytime PHYB-mediated thermosensing mechanism, in which HEMERA acts as a necessary activator for PIF4-dependent induction of temperature-responsive genes and PIF4 accumulation.
Organism: A. thaliana
Gene: PIF4
PubMed Id: 30635559
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study illustrates dynamics of PEP alpha-subunit (RNA polymerase alpha-subunit) and its associated protein plastid transcriptionally active chromosome 3 (pTAC3, At3g04260) during light-dependent transcription in chloroplasts.
Organism: A. thaliana
Gene: PTAC3
PubMed Id: 22529394
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reveals a mechanism in which light and ethylene signaling coordinate MDP60 expression to modulate hypocotyl cell elongation by altering cortical microtubules in Arabidopsis.[Mdp60]
Organism: A. thaliana
Gene: AT3G01015
PubMed Id: 29167353
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study suggest that MRP6 is part of a cluster involved in metal tolerance, although additional functions in planta cannot be discarded.
Organism: A. thaliana
Gene: ABCC8
PubMed Id: 18307782
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows FHY3 & FAR1, which encode proteins related to Mutator-like transposases, act together to modulate phyA signaling by activating transcription of FHY1 & FHL
Organism: A. thaliana
Gene: FHY3
PubMed Id: 18033885
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study suggest an additive contribution of AMT1;1 and AMT1;3 to the overall ammonium uptake capacity in Arabidopsis roots under nitrogen-deficiency conditions.
Organism: A. thaliana
Gene: AMT1;3
PubMed Id: 17026539
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study demonstrated that unphosphorylated ACS6 protein is rapidly degraded by the 26S proteasome pathway; the impact of this system on ethylene biosynthesis is discussed.
Organism: A. thaliana
Gene: ACS6
PubMed Id: 18182027
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study suggest an additive contribution of AMT1;1 and AMT1;3 to the overall ammonium uptake capacity in Arabidopsis roots under nitrogen-deficiency conditions.
Organism: A. thaliana
Gene: AMT1;1
PubMed Id: 17026539
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows FHY3 & FAR1, which encode proteins related to Mutator-like transposases, act together to modulate phyA signaling by activating transcription of FHY1 & FHL
Organism: A. thaliana
Gene: FAR1
PubMed Id: 18033885
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows that the overexpression of ATG8 genes provides beneficial effects on N management at the whole-plant level without affecting yield or plant biomass. [ATG8]
Organism: A. thaliana
Gene: ATG8F
PubMed Id: 30407574
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study imply that plasma membrane-localized CBL1- and CBL9-CIPK23 complexes simultaneously regulate potassium transport processes in roots and in stomatal guard cells.
Organism: A. thaliana
Gene: CBL1
PubMed Id: 17922773
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Taken together, findings of this study identify IPGA1 as a novel microtubule-associated protein and provide significant insights into IPGA1-mediated microtubule organization and petal growth anisotropy.
Organism: A. thaliana
Gene: AT4G18570
PubMed Id: 31198941
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Our study provided genetic evidence for the first time that, copper ions necessary for ethylene receptor biogenesis and signaling are transported from ATX1 to RAN1.
Organism: A. thaliana
Gene: RAN1
PubMed Id: 28388654
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study demonstrates that the G proteins are directly coupled to the FLS2 receptor complex and regulate immune signaling through both pre-activation and post-activation mechanisms.
Organism: A. thaliana
Gene: FLS2
PubMed Id: 27043937
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study imply that plasma membrane-localized CBL1- and CBL9-CIPK23 complexes simultaneously regulate potassium transport processes in roots and in stomatal guard cells.
Organism: A. thaliana
Gene: CBL9
PubMed Id: 17922773
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study on a mutant of eIFiso4G1 uncovered multifaceted interactions between the cytosolic and plastidic compartments in seed lipid biosynthesis that impact major seed oil traits.
Organism: A. thaliana
Gene: eIFiso4G1
PubMed Id: 28244172
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study describes a direct connection between the brassinosteroid-regulated BIN2 kinase and ARF2; phosphorylation by BIN2 results in loss of ARF2 DNA binding and repression activities
Organism: A. thaliana
Gene: ARF2
PubMed Id: 18599455
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results of this study imply that plasma membrane-localized CBL1- and CBL9-CIPK23 complexes simultaneously regulate potassium transport processes in roots and in stomatal guard cells.
Organism: A. thaliana
Gene: CIPK23
PubMed Id: 17922773
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study reveals a chloroplast ribosome assembly factor and outlines the transcriptomic and proteomic responses of the compensatory mechanism activated during decreased chloroplast function. [AtRsgA]
Organism: A. thaliana
Gene: emb1688
PubMed Id: 30044525
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: our study identifies RBD1 as a regulator of 23S rRNA processing and reveals the importance of chloroplast function especially protein translation in chilling tolerance. [RBD1]
Organism: A. thaliana
Gene: AT1G70200
PubMed Id: 27138552
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
 
Annotation: Study illustrates dynamics of PEP alpha-subunit (RNA polymerase alpha-subunit) and its associated protein plastid transcriptionally active chromosome 3 (pTAC3, At3g04260) during light-dependent transcription in chloroplasts.
Organism: A. thaliana
PubMed Id: 22529394
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Results from this study revealed that the stress-inducible miR163 and its targets act in concert to modulate defense responses against bacterial pathogen in A. thaliana.
Organism: A. thaliana
Gene: MIR163
PubMed Id: 28401908
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AGB1 inhibition of photomorphogenesis is mediated, through the repression of the DNA-binding activity of HY5 by the physical AGB1-HY5 interaction, and the mechanism of CRY1 control of photomorphogenesis involves positive regulation of the DNA-binding activity of HY5 by the CRY1--AGB1 interaction, which prevents the association of AGB1 with HY5
Organism: A. thaliana
Gene: CRY1
PubMed Id: 30176372
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AGB1 inhibition of photomorphogenesis is mediated, through the repression of the DNA-binding activity of HY5 by the physical AGB1-HY5 interaction, and the mechanism of CRY1 control of photomorphogenesis involves positive regulation of the DNA-binding activity of HY5 by the CRY1--AGB1 interaction, which prevents the association of AGB1 with HY5
Organism: A. thaliana
Gene: AGB1
PubMed Id: 30176372
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AGB1 inhibition of photomorphogenesis is mediated, through the repression of the DNA-binding activity of HY5 by the physical AGB1-HY5 interaction, and the mechanism of CRY1 control of photomorphogenesis involves positive regulation of the DNA-binding activity of HY5 by the CRY1--AGB1 interaction, which prevents the association of AGB1 with HY5
Organism: A. thaliana
Gene: HY5
PubMed Id: 30176372
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study demonstrates that BAK1 and BKK1 (AtSERK4) have dual physiological roles: positively regulating a brassinosteroid (BR)-dependent plant growth pathway, and negatively regulating a BR-independent cell-death pathway
Organism: A. thaliana
Gene: SERK4
PubMed Id: 17600708
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reveals that both ADC proteins are located in the same cell compartments, and they are able to form protein interaction complexes with each other.
Organism: A. thaliana
Gene: ADC1
PubMed Id: 28109885
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study reviewed ERECTA functions and indicated ERECTA as a pleiotropic regulator of developmental and physiological processes, as well as a modulator of responses to environmental stimuli.
Organism: A. thaliana
Gene: ER
PubMed Id: 19303350
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study shows that a set of three WRKY-specific cis-acting DNA elements (W boxes) within the AtWRKY33 promoter is required for efficient pathogen- or PAMP-triggered gene activation.
Organism: A. thaliana
Gene: WRKY33
PubMed Id: 17427812
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study used a quantitative genetics approach in Arabidopsis to clone Hydraulic Conductivity of Root 1 (HCR1), a Raf-like MAPKKK that negatively controls hydraulic conductivity. [HCR1]
Organism: A. thaliana
Gene: AT3G24715
PubMed Id: 27641502
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identifies the PPR protein MEF14 of the DYW subclass as a specific trans-factor required for C to U editing of site matR-1895 in mitochondria. [MEF14]
Organism: A. thaliana
Gene: MEF14
PubMed Id: 21281638
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study demonstrates that BAK1 and BKK1 (AtSERK4) have dual physiological roles: positively regulating a brassinosteroid (BR)-dependent plant growth pathway, and negatively regulating a BR-independent cell-death pathway
Organism: A. thaliana
Gene: BAK1
PubMed Id: 17600708
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reveals that both ADC proteins are located in the same cell compartments, and they are able to form protein interaction complexes with each other.
Organism: A. thaliana
Gene: ADC2
PubMed Id: 28109885
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: our study demonstrates the feasibility of using an unbiased chemical genetic approach to identify new pharmacological tools for manipulating FAAH- and NAE-mediated physiological processes in plants.
Organism: A. thaliana
Gene: FAAH
PubMed Id: 28112243
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study show that PAPP2C interacts in the nucleus with phyA and phyB, and functions as a regulator of PIF3 by dephosphorylating phytochromes in the nucleus. [PAPP2C]
Organism: A. thaliana
Gene: PAPP2C
PubMed Id: 18564962
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Our study demonstrates that CIBs function redundantly in regulating CRY2-dependent flowering, and that different CIBs form heterodimers to interact with the non-canonical E-box DNA in vivo.
Organism: A. thaliana
Gene: CRY2
PubMed Id: 24130508
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study not only provides a convenient and efficient transient expression system, but also reveals that NPR1-dependent SA signaling is a major barrier to efficient transient expression
Organism: A. thaliana
Gene: NPR1
PubMed Id: 28025761
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study shows that PHERES1 is regulated by genomic imprinting, which is likely caused by the presence of repeat sequences in the proximity of the PHERES1 locus.
Organism: A. thaliana
Gene: PHE1
PubMed Id: 19825646
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study discovered that microtubule severing by the protein katanin plays a crucial and unexpected role in the reorientation of cortical arrays, as triggered by blue light
Organism: A. thaliana
Gene: ERH3
PubMed Id: 24200811
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: COL3 targets FT in the presence of BBX32 to regulate the flowering pathway. This study identifies COL3 as a critical protein-binding partner for BBX32 action in Arabidopsis.
Organism: A. thaliana
Gene: COL3
PubMed Id: 27999181
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggests a role for TRIP-1 in the molecular mechanisms of brassinosteroid-regulated plant growth and development, possibly as a cytoplasmic substrate of the BRI1 receptor kinase.
Organism: A. thaliana
Gene: TRIP-1
PubMed Id: 15998311
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study shows that unidirectional (3-->5') transitivity requires the hierarchical and redundant functions of DCL4 and DCL2 acting downstream from RDR6 to produce 21- and 22-nt-long siRNAs, respectively.
Organism: A. thaliana
Gene: DCL2
PubMed Id: 17592042
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study shows that unidirectional (3-->5') transitivity requires the hierarchical and redundant functions of DCL4 and DCL2 acting downstream from RDR6 to produce 21- and 22-nt-long siRNAs, respectively.
Organism: A. thaliana
Gene: RDR6
PubMed Id: 17592042
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study describes a voltage-dependent Cl- channel located in Arabidopsis thylakoids (AtVCCN1), where it functions to fine-tune PMF and allows the plant to adjust photosynthesis to variable light.
Organism: A. thaliana
Gene: AT3G61320
PubMed Id: 27216227
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Our systematic study of the three GWDs of A. thaliana demonstrates that cytosolic GWD2, and in part also plastidic PWD, play unexpected roles in proper seed development.
Organism: A. thaliana
Gene: PWD
PubMed Id: 28303594
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study revealed a CBL-interacting protein kinase-independent regulatory mechanism of calcineurin B-like proteins in which CBL10 directly regulates AKT1 activity and affects ion homeostasis in plant cells.
Organism: A. thaliana
Gene: CBL10
PubMed Id: 23331977
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggests a role for TRIP-1 in the molecular mechanisms of brassinosteroid-regulated plant growth and development, possibly as a cytoplasmic substrate of the BRI1 receptor kinase.
Organism: A. thaliana
Gene: BRI1
PubMed Id: 15998311
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that HY5 directly binds to the MYBD promoter and that although MYBD and MYBH are homologs, they act in opposite ways during plant photomorphogenesis.
Organism: A. thaliana
Gene: HY5
PubMed Id: 26576746
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study shows that unidirectional (3-->5') transitivity requires the hierarchical and redundant functions of DCL4 and DCL2 acting downstream from RDR6 to produce 21- and 22-nt-long siRNAs, respectively.
Organism: A. thaliana
Gene: DCL4
PubMed Id: 17592042
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Our systematic study of the three GWDs of A. thaliana demonstrates that cytosolic GWD2, and in part also plastidic PWD, play unexpected roles in proper seed development.
Organism: A. thaliana
Gene: PWD
PubMed Id: 28303594
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: These study results suggested that OZS1 helps to close stomata, being not involved in the responses to light, abscisic acid, high concentrations of carbon dioxide and ozone.
Organism: A. thaliana
Gene: OZS1
PubMed Id: 18084014
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that HY5 directly binds to the MYBD promoter and that although MYBD and MYBH are homologs, they act in opposite ways during plant photomorphogenesis.
Organism: A. thaliana
Gene: AT1G70000
PubMed Id: 26576746
•
•
•
•
•





BAR logo CAGEF logo CAGEF logo Araport logo JCVI logo TACC logo

InterMine is funded by the and interoperation is funded by

© 2002 - 2021 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom