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Search results 101 to 200 out of 124213 for Genome-wide association study

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Type Details Score
Gene
AT4G32940 | locus:2123782 | GAMMA-VPE | gamma vacuolar processing enzyme
Length: 3254  
Chromosome Location: Chr4: 15900270-15903523
Organism . Short Name: A. thaliana
TAIR Computational Description: gamma vacuolar processing enzyme;(source:Araport11)
TAIR Curator Summary: Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.
TAIR Short Description: gamma vacuolar processing enzyme
TAIR Aliases: AEP3, AtLEG gamma, GAMMA-VPE, GAMMAVPE, LEG gamma
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Protein Domain
IPR002852
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Genome-wide association mapping identified PHOSPHATE 1 (PHO1) and genes such as Root System Architecture 1 (RSA1) associated with differences in root allometry, a highly plastic trait capturing the distribution of lateral roots along the primary axis.
Organism: A. thaliana
Gene: PHO1
PubMed Id: 23980140
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Gene
AT5G43270 | locus:2169248 | SPL2 | squamosa promoter binding protein-like 2
Length: 3594  
Chromosome Location: Chr5: 17360287-17363880
Organism . Short Name: A. thaliana
TAIR Computational Description: squamosa promoter binding protein-like 2;(source:Araport11)
TAIR Curator Summary: Member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL2, SPL10, and SPL11, suppress root regeneration with age by inhibiting wound-induced auxin biosynthesis.
TAIR Short Description: squamosa promoter binding protein-like 2
TAIR Aliases: SPL2
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Gene
AT2G21120 | locus:2047112 | AT2G21120 | -
Length: 3097  
Chromosome Location: Chr2: 9051725-9054821
Organism . Short Name: A. thaliana
TAIR Computational Description: magnesium transporter, putative (DUF803);(source:Araport11)
TAIR Curator Summary: Encodes a putative magnesium transporter that was identified through a forward genetic screen, directly isolating antiviral RNAi-defective (avi) mutant using a Cucumber Mosaic Virus (CMV) mutant. Compared to Wildtype Col-0, avi2 mutant showed severe disease symptom after viral infection and viral accumulation was significantly increased while viral siRNAs and virus-activated endogenous siRNAs (vasiRNAs) were reduced in avi2 mutant. Detailed genetic study indicated that AVI2 modulated RNAi-mediated antiviral immunity by regulating the biogenesis of secondary viral siRNAs and vasiRNAs in Arabidopsis.
TAIR Short Description: Protein of unknown function (DUF803)
TAIR Aliases: AVI2, ENOR3
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Gene
AT5G50920 | locus:2157383 | CLPC1 | CLPC homologue 1
Length: 5229  
Chromosome Location: Chr5: 20715453-20720681
Organism . Short Name: A. thaliana
TAIR Computational Description: CLPC homologue 1;(source:Araport11)
TAIR Curator Summary: Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. Association of Hsp93 with the inner envelope membrane through its N domain is important for the functions of Hsp93 in vivo.
TAIR Short Description: CLPC homologue 1
TAIR Aliases: ATHSP93-V, CLPC, CLPC1, DCA1, HSP93-V
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Protein Domain
IPR018871
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Ontology Term Synonym
Ontology Term Synonym
Name: positive regulation of cohesin association with chromatin
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: activation of spinal cord association neuron differentiation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: up-regulation of spinal cord association neuron differentiation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: upregulation of spinal cord association neuron differentiation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: down-regulation of spinal cord association neuron differentiation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: downregulation of spinal cord association neuron differentiation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: inhibition of spinal cord association neuron differentiation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: negative regulation of cohesin association with chromatin
Type: synonym
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Gene
AT5G16510 | locus:2171362 | RGP5 | reversibly glycosylated polypeptide 5
Length: 1998  
Chromosome Location: Chr5: 5392576-5394573
Organism . Short Name: A. thaliana
TAIR Computational Description: Alpha-1,4-glucan-protein synthase family protein;(source:Araport11)
TAIR Curator Summary: RGP5 is a member of the reversably-glycosylated family of proteins. Analyses using tagged RGP5 suggest that it is present in the cytosol and in association with the Golgi apparatus. Recombinant RGP5 does not have UDP-arabinose mutase activity based on an in vitro assay even though the related RGP1, RGP2, and RGP3 proteins do have activity in the same assay. RGP5 can form complexes with RGP1 and RGP2.
TAIR Short Description: Alpha-1,4-glucan-protein synthase family protein
TAIR Aliases: RGP5
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Protein Domain
IPR026806
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Gene
AT5G50750 | locus:2163305 | RGP4 | reversibly glycosylated polypeptide 4
Length: 1796  
Chromosome Location: Chr5: 20640992-20642787
Organism . Short Name: A. thaliana
TAIR Computational Description: reversibly glycosylated polypeptide 4;(source:Araport11)
TAIR Curator Summary: RGP4 is a reversibly glycosylated polypeptide. Analyses using tagged RGP4 suggest that it is present in the cytosol and in association with the Golgi apparatus. Recombinant RGP4 does not have UDP-arabinose mutase activity based on an in vitro assay even though the related RGP1, RGP2, and RGP3 proteins do have activity in the same assay. RGP4 can form complexes with RGP1 and RGP2. RGP4 is expressed during seed development.
TAIR Short Description: reversibly glycosylated polypeptide 4
TAIR Aliases: RGP4
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Gene
AT4G33430 | locus:2119260 | BAK1 | BRI1-associated receptor kinase
Length: 4522  
Chromosome Location: Chr4: 16086311-16090832
Organism . Short Name: A. thaliana
TAIR Computational Description: BRI1-associated receptor kinase;(source:Araport11)
TAIR Curator Summary: Leu-rich receptor Serine/threonine protein kinase. Component of BR signaling that interacts with BRI1 in vitro and in vivo to form a heterodimer. Brassinolide-dependent association of BRI1 and BAK1 in vivo. Phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. Contributes to postinvasive immunity against Alternaria brassicola.
TAIR Short Description: BRI1-associated receptor kinase
TAIR Aliases: ATBAK1, ATSERK3, BAK1, ELG, RKS10, SERK3
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Gene
AT3G23700 | locus:2095203 | AT3G23700 | -
Length: 2461  
Chromosome Location: Chr3: 8531374-8533834
Organism . Short Name: A. thaliana
TAIR Computational Description: Nucleic acid-binding proteins superfamily;(source:Araport11)
TAIR Curator Summary: Encodes a chloroplast-localized S1 domain-containing protein with RNA chaperone activity that affects the splicing and processing of chloroplast transcripts and plays a role in seedling growth in the presence of ABA. Binds the chloroplast psbA RNA and some other chloroplast RNAs. Required for the stability of the chloroplast ndhC RNA. Inhibits ribosome association with psbA RNA and ycf1 RNA. Not required for the splicing of chloroplast trnL, as had been reported previously.
TAIR Short Description: Nucleic acid-binding proteins superfamily
TAIR Aliases: SRRP1
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Gene
AT1G08600 | locus:2025560 | ATRX | -
Length: 9937  
Chromosome Location: Chr1: 2723677-2733613
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: The Arabidopsis ATRX harbours a N-terminal ADD domain and a C-terminal helicase domain and is devoid of the large central region involved in DAXX interaction in mammals. Arabidopsis ATRX mutant alleles are viable, but with reduced fertility. Their combination with mutants for the H3.3 chaperone HIRA impairs plant survival. ATRX loss affects cellular histone H3.3 pools and modulates the H3.1/H3.3 balance. Notably, at a genome-wide scale, loss of ATRX leads to a reduced H3.3 level at genes characterized by elevated H3.3 occupancy and high expression, including the 45S ribosomal DNA (45S rDNA) loci. Indeed, expression of specific 45S rDNA sequence variants is altered by ATRX loss (DOI:10.1105/tpc.16.00877)
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: ATRX, CHR20
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GO Term
GO:0021519 | spinal cord association neuron specification
Description: The process in which a cell becomes capable of differentiating autonomously into an association neuron in an environment that is neutral with respect to the developmental pathway.
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GO Term
GO:0021527 | spinal cord association neuron differentiation
Description: The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of association neurons. Association neurons are cells located in the dorsal portion of the spinal cord that integrate sensory input. Differentiation includes the processes involved in commitment of a cell to a specific fate.
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mRNA
AT2G45760.1
Length: 892  
Chromosome Location: Chr2: 18846944-18847835
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mRNA
AT3G61190.2
Length: 1213  
Chromosome Location: Chr3: 22650159-22651598
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mRNA
AT3G61190.1
Length: 1183  
Chromosome Location: Chr3: 22650454-22651636
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Gene
AT2G35110 | locus:2063479 | GRL | GNARLED
Length: 8257  
Chromosome Location: Chr2: 14795715-14803971
Organism . Short Name: A. thaliana
TAIR Computational Description: transcription activator;(source:Araport11)
TAIR Curator Summary: Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs. Its ER localization is independent of upstream SPK1 activation signaling and the physical association with the WAVE/SCAR Regulatory complex binding partner SRA1. ER-localized NAP1 has little colocalization with actin and represent the inactive pool of NAP1 in these cell types.
TAIR Short Description: transcription activators
TAIR Aliases: GRL, LPL3, NAP1, NAPP
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Protein Domain
IPR002850
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The authors found that HDA9 acts in complex with a SANT domain-containing protein POWERDRESS (PWR) and transcription factor WRKY53. Genome-wide profiling of HDA9 occupancy reveals that HDA9 directly binds to the promoters of key negative regulators of senescence and this association requires PWR.
Organism: A. thaliana
Gene: HDA9
PubMed Id: 27873573
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The authors found that HDA9 acts in complex with a SANT domain-containing protein POWERDRESS (PWR) and transcription factor WRKY53. Genome-wide profiling of HDA9 occupancy reveals that HDA9 directly binds to the promoters of key negative regulators of senescence and this association requires PWR.
Organism: A. thaliana
Gene: AT3G52250
PubMed Id: 27873573
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GO Term
GO:0006605 | protein targeting
Description: The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
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Ontology Term Synonym
Ontology Term Synonym
Name: up regulation of spinal cord association neuron differentiation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: down regulation of spinal cord association neuron differentiation
Type: synonym
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Protein Domain
IPR004172
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Protein Domain
IPR036892
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Warm temperature-triggered developmental reprogramming requires VIL1-mediated, genome-wide H3K27me3 accumulation in Arabidopsis.
Organism: A. thaliana
Gene: VRN5
PubMed Id: 36762655
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: STN1 plays a genome-wide role in DNA replication and telomere stability.
Organism: A. thaliana
Gene: STN1
PubMed Id: 25299252
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Protein Domain
IPR012732
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Protein Domain
IPR014090
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study propose that SUVH2 and SUVH9 bind to the methylated DNA and facilitate the recruitment of a chromatin-remodeling complex to the target loci in association with MORC proteins.
Organism: A. thaliana
Gene: SUVH2
PubMed Id: 27216319
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study propose that SUVH2 and SUVH9 bind to the methylated DNA and facilitate the recruitment of a chromatin-remodeling complex to the target loci in association with MORC proteins.
Organism: A. thaliana
Gene: SUVH9
PubMed Id: 27216319
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GO Term
GO:0043621 | protein self-association
Description: Binding to a domain within the same polypeptide.
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Publication
50316
First Author: Reiners JJ Jr
Title: Immunological study of anthranilate synthetase.
Year: 1975
Journal: J Bacteriol
Volume: 123
Pages: 620-30
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Publication
13679979
First Author: Peters JL
Title: An AFLP-based genome-wide mapping strategy.
Year: 2004
Journal: Theor Appl Genet
Volume: 108
Pages: 321-7
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Publication
19520962
First Author: Hsieh TF
Title: Genome-wide demethylation of Arabidopsis endosperm.
Year: 2009
Journal: Science
Volume: 324
Pages: 1451-4
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Interaction Term
MI:0914 | association
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GO Term
GO:0015244 | fluconazole transmembrane transporter activity
Description: Enables the transfer of fluconazole from one side of a membrane to the other. Fluconazole is an antifungal drug used for oral candidiasis and cryptococcal meningitis; it is still under study for treatment of vaginal candidiasis and other fungal infections.
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Protein Domain
IPR047852
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Protein Domain
IPR033614
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Gene
AT1G11400 | locus:2200116 | PYM | partner of Y14-MAGO
Length: 3525  
Chromosome Location: Chr1: 3837694-3841218
Organism . Short Name: A. thaliana
TAIR Computational Description: partner of Y14-MAGO;(source:Araport11)
TAIR Curator Summary: The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.
TAIR Short Description: partner of Y14-MAGO
TAIR Aliases: PYM
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis AGAMOUS-LIKE16 and SUPPRESSOR OF CONSTANS1 regulate the genome-wide expression and flowering time.
Organism: A. thaliana
Gene: AGL20
PubMed Id: 36721922
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis AGAMOUS-LIKE16 and SUPPRESSOR OF CONSTANS1 regulate the genome-wide expression and flowering time.
Organism: A. thaliana
Gene: AGL16
PubMed Id: 36721922
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Genome-wide binding of SEPALLATA3 and AGAMOUS complexes determined by sequential DNA-affinity purification sequencing.
Organism: A. thaliana
Gene: AG
PubMed Id: 32890394
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Dna polymerase alpha plays a genome-wide role in DNA replication and telomere stability.
Organism: A. thaliana
Gene: ICU2
PubMed Id: 25299252
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Genome-wide binding of SEPALLATA3 and AGAMOUS complexes determined by sequential DNA-affinity purification sequencing.
Organism: A. thaliana
Gene: SEP3
PubMed Id: 32890394
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identifies a novel component required for sperm cell formation in plants and uncovers a direct positive regulatory role of ARID1 on DUO1 through association with histone acetylation. [ARID1]
Organism: A. thaliana
Gene: AT2G46040
PubMed Id: 25057814
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Protein Domain
IPR022391
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Publication
24348496
First Author: Feeney M
Title: Reprogramming cells to study vacuolar development.
Year: 2013
Journal: Front Plant Sci
Volume: 4
Pages: 493
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Publication
18882199
First Author: AHLQUIST RP
Title: A study of the adrenotropic receptors.
Year: 1948
Journal: Am J Physiol
Volume: 153
Pages: 586-600
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Publication
12529184
First Author: Roloff TC
Title: Comparative study of methyl-CpG-binding domain proteins.
Year: 2003
Journal: BMC Genomics
Volume: 4
Pages: 1
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Publication
16720602
First Author: Rouhier N
Title: Genome-wide analysis of plant glutaredoxin systems.
Year: 2006
Journal: J Exp Bot
Volume: 57
Pages: 1685-96
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Publication
24155946
First Author: Merelo P
Title: Genome-wide identification of KANADI1 target genes.
Year: 2013
Journal: PLoS One
Volume: 8
Pages: e77341
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Interaction Term
MI:0839 | per mole per second
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis.
Organism: A. thaliana
Gene: HSI2
PubMed Id: 33270882
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Genome-wide (ChIP-seq) identification of target genes regulated by WRKY33 during submergence stress in Arabidopsis.
Organism: A. thaliana
Gene: WRKY33
PubMed Id: 34030628
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Genome-wide binding analysis reveals that ANAC060 directly represses sugar-induced transcription of ABI5 in Arabidopsis.
Organism: A. thaliana
Gene: NAC060
PubMed Id: 32314488
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis.
Organism: A. thaliana
Gene: HSL1
PubMed Id: 33270882
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Protein Domain
IPR008034
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Protein Domain
IPR039763
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Integrative genome-wide analysis reveals the role of WIP proteins in inhibition of growth and development.
Organism: A. thaliana
Gene: WIP2
PubMed Id: 32415243
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Integrative genome-wide analysis reveals the role of WIP proteins in inhibition of growth and development.
Organism: A. thaliana
Gene: WIP1
PubMed Id: 32415243
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Publication
16310363
First Author: Wong WS
Title: Study of cis-cinnamic acid in Arabidopsis thaliana.
Year: 2005
Journal: Plant Physiol Biochem
Volume: 43
Pages: 929-37
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Publication
18487636
First Author: Leseberg CH
Title: Interaction study of MADS-domain proteins in tomato.
Year: 2008
Journal: J Exp Bot
Volume: 59
Pages: 2253-65
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Publication
2884726
First Author: Gehring WJ
Title: Homeo boxes in the study of development.
Year: 1987
Journal: Science
Volume: 236
Pages: 1245-52
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Publication
12801412
First Author: Verelst W
Title: A phylogenetic study of cytochrome b561 proteins.
Year: 2003
Journal: Genome Biol
Volume: 4
Pages: R38
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Publication
25568314
First Author: Qin Y
Title: Structural and functional study of D-glucuronyl C5-epimerase.
Year: 2015
Journal: J Biol Chem
Volume: 290
Pages: 4620-4630
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study propose that FIO1 regulates period length in the Arabidopsis circadian clock in a close association with the central oscillator and that the circadian period can be controlled separately from amplitude and robustness.
Organism: A. thaliana
Gene: FIO1
PubMed Id: 18281507
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Publication
12671079
First Author: Meyers BC
Title: Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis.
Year: 2003
Journal: Plant Cell
Volume: 15
Pages: 809-34
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Publication
15634201
First Author: Wakao S
Title: Genome-wide analysis of glucose-6-phosphate dehydrogenases in Arabidopsis.
Year: 2005
Journal: Plant J
Volume: 41
Pages: 243-56
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Publication
11641065
First Author: Potuschak T
Title: Cell cycle controls: genome-wide analysis in Arabidopsis.
Year: 2001
Journal: Curr Opin Plant Biol
Volume: 4
Pages: 501-6
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Publication
17298187
First Author: Kasschau KD
Title: Genome-wide profiling and analysis of Arabidopsis siRNAs.
Year: 2007
Journal: PLoS Biol
Volume: 5
Pages: e57
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Publication
28840447
First Author: Lai CP
Title: Genome-wide analysis of GDSL-type esterases/lipases in Arabidopsis.
Year: 2017
Journal: Plant Mol Biol
Volume: 95
Pages: 181-197
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GO Term
GO:0001551 | ovarian follicle endowment
Description: Association of oocytes with supporting epithelial granulosa cells to form primordial follicles.
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Protein Domain
IPR047738
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Interaction Experiment
Interaction Experiment
Name: Takahashi H (2012)
Description: Genome-wide biochemical analysis of Arabidopsis protein phosphatase using a wheat cell-free system.
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Protein Domain
IPR034031
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GO Term
GO:1902829 | regulation of spinal cord association neuron differentiation
Description: Any process that modulates the frequency, rate or extent of spinal cord association neuron differentiation.
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Author
Deciphering Developmental Disorders Study
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Author
International JSRD Study Group
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Author
Parkinson REGAIN Study Group
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Interaction Experiment
Interaction Experiment
Name: pasch-2005-1
Description: The yeast split-ubiquitin system to study chloroplast membrane protein interactions.
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Interaction Experiment
Interaction Experiment
Name: Pasch JC (2005)
Description: The yeast split-ubiquitin system to study chloroplast membrane protein interactions.
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GO Term
GO:0100067 | positive regulation of spinal cord association neuron differentiation by canonical Wnt signaling pathway
Description: Any canonical Wnt signaling pathway process that positively_regulates spinal cord association neuron differentiation.
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Publication
14505352
First Author: Calikowski TT
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Title: Proteomics study of COI1-regulated proteins in Arabidopsis flower.
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Title: Transgenic study of parallelism in plant morphological evolution.
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