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Search results 601 to 700 out of 815 for Genome-wide association study

Category restricted to Generif (x)

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Category: Generif
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Type Details Score
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study demonstrates that the number of RPW8/HR repeats and the short C-terminal tail correlate, in an allele-specific manner, with the severity of hybrid necrosis when these alleles are combined with RPP7 variants.
Organism: A. thaliana
Gene: HR1
PubMed Id: 31344025
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study find that AHA2 drives root cell expansion during growth but that, unexpectedly, restriction of root hair elongation is dependent on AHA2 and AHA7, with each having different roles in this process.
Organism: A. thaliana
Gene: HA7
PubMed Id: 30238999
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study found loss of TPC1 did not change membrane hyperpolarization-activated Ca(2+)-permeable channel activity; we conclude TPC1, under physiological conditions, functions as a vacuolar cation channel without major impact on cytosolic Ca(2+) homeostasis
Organism: A. thaliana
Gene: TPC1
PubMed Id: 18028262
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study discovered that a key Abscisic acid (ABA) signaling component calcium-dependent protein kinase 4 (CPK4) can interact with AtIpk2 beta under ABA treated conditions through affinity purification and mass spectrometry detection.
Organism: A. thaliana
Gene: CPK4
PubMed Id: 28623136
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The present study of BOR1 and NIP5;1 demonstrates the importance of selective endocytic trafficking in polar localization and degradation of plant nutrient transporters for radial transport and homeostasis of plant mineral nutrients.
Organism: A. thaliana
Gene: NIP5;1
PubMed Id: 20194745
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study investigated and revealed a role for MOS1 in transcriptional regulation through TCP15 and its homologues. This finding suggests the coordination of cell-cycle progression and plant immune responses at multiple levels.
Organism: A. thaliana
Gene: MOS1
PubMed Id: 29086441
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study demonstrates ABI1 can interact with several PYR/PYL/RCAR family members, that PYR1-ABI1 interaction is rapidly stimulated by ABA & indicate new SnRK2 kinase-PYR/PYL/RCAR interactions in an emerging model for PYR/PYL/RCAR-mediated ABA signalling
Organism: A. thaliana
Gene: ABI1
PubMed Id: 19874541
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study find that AHA2 drives root cell expansion during growth but that, unexpectedly, restriction of root hair elongation is dependent on AHA2 and AHA7, with each having different roles in this process.
Organism: A. thaliana
Gene: HA2
PubMed Id: 30238999
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that OFP1 and OFP4 enhance the repression activity of BLH6, supporting a role for these OFPs as components of a putative multi-protein transcription regulatory complex containing BLH6 and KNAT7.
Organism: A. thaliana
Gene: BLH6
PubMed Id: 26107719
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that reductases play significant roles in changing Green leaf volatiles (GLVs) composition and, thus, are important in avoiding toxicity from volatile carbonyls and in the attraction of herbivore predators.
Organism: A. thaliana
Gene: ELI3-1
PubMed Id: 30126866
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that OFP1 and OFP4 enhance the repression activity of BLH6, supporting a role for these OFPs as components of a putative multi-protein transcription regulatory complex containing BLH6 and KNAT7.
Organism: A. thaliana
Gene: OFP1
PubMed Id: 26107719
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports that pollen tubes of anx1/anx2 mutants ruptured before arriving at the egg apparatus, suggesting that ANX1(At3g04690) and ANX2(At5g28680)are male factors controlling pollen tube behavior by directing rupture at proper timing
Organism: A. thaliana
Gene: ANX2
PubMed Id: 19646876
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The ARC6 intermembrane space region bears a structurally uncharacterized domain of unknown function, DUF4101, that is highly conserved among ARC6 and Ftn2 proteins. This study reports the crystal structure of this domain.
Organism: A. thaliana
Gene: ARC6
PubMed Id: 26452626
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identifies critical residues of a key Arabidopsis methylerythritol phosphate pathway enzyme, hydroxymethylbutenyl diphosphate synthase (HDS), valuable for synthetic engineering of isoprenoids, and as potential targets for rational design of antiinfective drugs.
Organism: A. thaliana
Gene: HDS
PubMed Id: 31879352
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study discovered that a key Abscisic acid (ABA) signaling component calcium-dependent protein kinase 4 (CPK4) can interact with AtIpk2 beta under ABA treated conditions through affinity purification and mass spectrometry detection.
Organism: A. thaliana
Gene: IPK2BETA
PubMed Id: 28623136
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study isolated an Arabidopsis mutant, stomatal carpenter 1 (scap1), that develops irregularly shaped guard cells and lacks the ability to control stomatal aperture, including CO2-induced stomatal closing and light-induced stomatal opening.
Organism: A. thaliana
Gene: AT5G65590
PubMed Id: 23453954
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that OFP1 and OFP4 enhance the repression activity of BLH6, supporting a role for these OFPs as components of a putative multi-protein transcription regulatory complex containing BLH6 and KNAT7.
Organism: A. thaliana
Gene: OFP4
PubMed Id: 26107719
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study provides the genetic evidence for the requirement of transcriptional regulation in the repression of ploidy-dependent plant cell growth as well as for an involvement of GTL trihelix proteins in this regulation.
Organism: A. thaliana
Gene: GTL1
PubMed Id: 19717615
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study illustrates that protein stability controlled by dynamic post-transcriptional modification is a critical regulatory mechanism for receptor for activated c kinase 1B which functions as scaffold protein for RAP2.6 in ABA signaling.
Organism: A. thaliana
Gene: RAP2.6
PubMed Id: 28272518
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study illustrates that protein stability controlled by dynamic post-transcriptional modification is a critical regulatory mechanism for receptor for activated c kinase 1B which functions as scaffold protein for RAP2.6 in ABA signaling.
Organism: A. thaliana
Gene: RACK1B_AT
PubMed Id: 28272518
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that OFP1 and OFP4 enhance the repression activity of BLH6, supporting a role for these OFPs as components of a putative multi-protein transcription regulatory complex containing BLH6 and KNAT7.
Organism: A. thaliana
Gene: KNAT7
PubMed Id: 26107719
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study investigated and revealed a role for MOS1 in transcriptional regulation through TCP15 and its homologues. This finding suggests the coordination of cell-cycle progression and plant immune responses at multiple levels.
Organism: A. thaliana
Gene: TCP15
PubMed Id: 29086441
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identified one of the Arabidopsis thaliana DEAD-box RNA helicases, AtRH7, as an interactor of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 (AtCSP3), which is an RNA chaperone involved in cold adaptation. [AtCSP3]
Organism: A. thaliana
Gene: CSP3
PubMed Id: 27116354
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study find that WUSCHEL, a key gene required for apical meristem maintenance, is a cytokinin-dependent type-B ARABIDOPSIS RESPONSE REGULATORS target gene, demonstrating the importance of the cytokinin transcription factor network in shoot development.
Organism: A. thaliana
Gene: WUS
PubMed Id: 29686312
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports a SnRK2-PP2C complex structure, which reveals marked similarity in PP2C recognition by SnRK2 and ABA receptors; structural results provide a simple mechanism that directly couples ABA binding to SnRK2 kinase activation
Organism: A. thaliana
Gene: PYL2
PubMed Id: 22116026
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identified At2g31840 protein as a NUCLEAR CONTROL OF PEP ACTIVITY (NCP) which is a necessary component of phytochrome signaling for photosynthesis-associated plastid-encoded genes activation. NCP is dual-targeted to plastids and the nucleus.
Organism: A. thaliana
Gene: MRL7-L
PubMed Id: 31201314
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study shows that PHYTOCHROME INTERACTING FACTOR 4 (PIF4)-mediated thermosensory growth and architecture adaptations are directly linked to suppression of immunity at elevated temperature. PIF4 positively regulates growth and development and negatively regulates immunity.
Organism: A. thaliana
Gene: PIF4
PubMed Id: 28041792
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: cpSRP43 chromodomain 3 interacts with a linear motif in the Alb3 C-terminal tail. Study describes the structural basis for selectivity of CPSRP43 chromodomains 2 and 3 for their respective ligands cpSRP54 and Alb3.
Organism: A. thaliana
Gene: CAO
PubMed Id: 26568381
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This work describes a detailed quantitative interaction study between the novel plastidial chaperone receptor OEP61 and isoforms of the chaperone types Hsp70 and Hsp90 using the optical method of total internal reflection ellipsometry.
Organism: A. thaliana
Gene: HSP70
PubMed Id: 21767504
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: isolation and characterization of the her1 mutant (encoding GABA-TP) altered in a specific response to E-2-hexenal; study shows that, as a consequence of the mutation in GABA-TP, her1 plants accumulate high GABA levels
Organism: A. thaliana
Gene: POP2
PubMed Id: 17971036
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that overexpression of SYP73 causes a striking rearrangement of the ER over actin and that loss of SYP73 reduces ER streaming and affects overall ER network morphology and plant growth.
Organism: A. thaliana
Gene: SYP73
PubMed Id: 27866894
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports a SnRK2-PP2C complex structure, which reveals marked similarity in PP2C recognition by SnRK2 and ABA receptors; structural results provide a simple mechanism that directly couples ABA binding to SnRK2 kinase activation
Organism: A. thaliana
Gene: OST1
PubMed Id: 22116026
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study reports that the hormone abscisic acid, which controls ion transport and transpiration in plants under water stress, triggers the selective endocytosis of the KAT1 K+ channel protein in epidermal and guard cells.
Organism: A. thaliana
Gene: KAT1
PubMed Id: 17683934
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This work describes a detailed quantitative interaction study between the novel plastidial chaperone receptor OEP61 and isoforms of the chaperone types Hsp70 and Hsp90 using the optical method of total internal reflection ellipsometry.
Organism: A. thaliana
Gene: HSP90.1
PubMed Id: 21767504
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports a SnRK2-PP2C complex structure, which reveals marked similarity in PP2C recognition by SnRK2 and ABA receptors; structural results provide a simple mechanism that directly couples ABA binding to SnRK2 kinase activation
Organism: A. thaliana
Gene: ABI2
PubMed Id: 22116026
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identified one of the Arabidopsis thaliana DEAD-box RNA helicases, AtRH7, as an interactor of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 (AtCSP3), which is an RNA chaperone involved in cold adaptation. [AtRH7]
Organism: A. thaliana
Gene: PRH75
PubMed Id: 27116354
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study suggests that CSU4 acts as a negative regulator of CCA1 via physically associating with CCA1, which in turn, likely serves to repress expression of CCA1 and PIF4 to promote photomorphogenesis. [CSU4]
Organism: A. thaliana
Gene: AT5G63440
PubMed Id: 30352855
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This data from this study indicate the importance of UDP-D-galactose synthesis by UGE4 for the organization and function of endomembranes, especially TGN/EEs, which are a sorting station of the secretory and vacuolar pathways.
Organism: A. thaliana
Gene: RHD1
PubMed Id: 26013532
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports a SnRK2-PP2C complex structure, which reveals marked similarity in PP2C recognition by SnRK2 and ABA receptors; structural results provide a simple mechanism that directly couples ABA binding to SnRK2 kinase activation
Organism: A. thaliana
Gene: HAB1
PubMed Id: 22116026
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study identified STH2 (SALT TOLERANCE HOMOLOG2), a B-box protein in Arabidopsis thaliana, as a positive regulator of photomorphogenesis and report that the B-box domain plays a direct role in activating transcription in plants
Organism: A. thaliana
Gene: BBX21
PubMed Id: 17965270
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SPT6L plays its conserved role in facilitating RNAPII occupancy across transcribed genes. Its enrichment is unexpectedly shifted, from gene body to transcription start site (TSS), when its association with RNAPII is disrupted. The HtH and YqgF domains are required for the TSS association. Recruitment of SPT6L at TSS is indispensable for its spreading along the gene body during transcription. [SPT6L]
Organism: A. thaliana
Gene: GTB1
PubMed Id: 31127286
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study reports the results of a functional genomics research effort that identified ATHB17, a transcription factor from the homeodomain-leucine zipper class II family, as a novel target for the enhancement of photosynthetic capacity.
Organism: A. thaliana
Gene: HB17
PubMed Id: 24006420
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identifies the first two regulatory genes, WRI1 and DGAT1, that control the synthesis of all tocochromanol forms in seeds, and shows the existence of a metabolic trade-off between lipid and tocochromanol metabolisms.
Organism: A. thaliana
Gene: TAG1
PubMed Id: 29105089
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study examined ABI4 protein accumulation indirectly, using transgenic lines expressing fusions to beta-glucuronidase. Inclusion of ABI4 coding sequence reduced the ratio of activity to transcript by ~150-fold when controlled by the ABI4 promoter.
Organism: A. thaliana
Gene: ABI4
PubMed Id: 21504878
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: RICEs act to degrade uridylated 5' products of AGO cleavage to maintain functional RISC(RNA-induced silencing complex). Study also suggests a possible link between decay of cleaved target mRNAs and miRNA stability in RISC. [RICE1]
Organism: A. thaliana
Gene: AT3G11770
PubMed Id: 28463111
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study tissue-generating asymmetric divisions in a stem cell daughter within the Arabidopsis root finds spatial restriction of these divisions requires physical binding of the stem cell regulator SCARECROW (SCR) by the RETINOBLASTOMA-RELATED (RBR) protein.
Organism: A. thaliana
Gene: RBR1
PubMed Id: 22921914
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows VIP1 is a direct target of Agrobacterium-induced MPK3; on phosphorylation by MPK3, VIP1 relocalizes to nucleus & regulates expression of PR1; MAPK-dependent phosphorylation of VIP1 is necessary for VIP1-mediated Agrobacterium T-DNA transfer
Organism: A. thaliana
Gene: MPK3
PubMed Id: 17947581
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study identified BIC1 (blue-light inhibitor of cryptochromes 1) as an inhibitor of plant cryptochromes that binds to CRY2 to suppress the blue light-dependent dimerization, photobody formation, phosphorylation, degradation, and physiological activities of CRY2.
Organism: A. thaliana
Gene: AT3G52740
PubMed Id: 27846570
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study tissue-generating asymmetric divisions in a stem cell daughter within the Arabidopsis root finds spatial restriction of these divisions requires physical binding of the stem cell regulator SCARECROW (SCR) by the RETINOBLASTOMA-RELATED (RBR) protein.
Organism: A. thaliana
Gene: SCR
PubMed Id: 22921914
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The present study describes a novel metabolic engineering ploy involving the constitutive down-regulation of endogenous ADP-glucose pyrophosphorylase (BjAGPase) enzyme and the seed-specific expression of WRINKLED1 transcription factor (AtWRI1) from Arabidopsis thaliana in Indian mustard.
Organism: A. thaliana
Gene: WRI1
PubMed Id: 27314514
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identifies the first two regulatory genes, WRI1 and DGAT1, that control the synthesis of all tocochromanol forms in seeds, and shows the existence of a metabolic trade-off between lipid and tocochromanol metabolisms.
Organism: A. thaliana
Gene: WRI1
PubMed Id: 29105089
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study results in mesophyll vacuoles from Arabidopsis show that the vacuolar K+-conducting TPC1 and TPK1/TPK3 channels act in concert to provide for Ca2+- and voltage-induced electrical excitability to the central organelle of plant cells.
Organism: A. thaliana
Gene: TPC1
PubMed Id: 31201323
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that increased temperature promotes rapid accumulation of the TIR1 auxin co-receptor, an effect that is dependent on the molecular chaperone HSP90, and that HSP90 and SGT1 integrate temperature and auxin signaling.[SGT1]
Organism: A. thaliana
Gene: SGT1B
PubMed Id: 26728313
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study demonstrates a link between putative N-acetylornithine deacetylase (AtNAOD) activity and the cellular levels of ornithine and PAs; it also provides evidence of a role for AtNAOD in flowering and in fruit setting. [AtNAOD]
Organism: A. thaliana
Gene: AT4G17830
PubMed Id: 25713174
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study demonstrates that ABP1 mediates a nontranscriptional auxin signaling that regulates process of clathrin-mediated endocytosis and suggests that this signaling may be essential for the developmentally important feedback of auxin on its own transport.
Organism: A. thaliana
Gene: ABP1
PubMed Id: 20887896
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows type I metacaspases, AtMC1 and AtMC2, antagonistically control programmed cell death; AtMC1 is a positive regulator of cell death; requires conserved caspase-like putative catalytic residues for function; AtMC2 negatively regulates cell death
Organism: A. thaliana
Gene: MC2
PubMed Id: 21097903
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identifies 2 proteins homologous to orphan vertebrate GPCR (GPR89) and interact with the Arabidopsis G protein alpha subunit, GPA1, have intrinsic GTP-binding and GTPase activity; these proteins are named GTG1 and GTG2 (At4g27630).
Organism: A. thaliana
Gene: GTG2
PubMed Id: 19135895
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that apoplastic GGT silencing induces a decrease in the number of organs with a high GSH demand (seeds and trichomes) as a result of resource reallocation to preserve integrity and composition.
Organism: A. thaliana
Gene: GGT2
PubMed Id: 28319794
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: RICEs act to degrade uridylated 5' products of AGO cleavage to maintain functional RISC(RNA-induced silencing complex). Study also suggests a possible link between decay of cleaved target mRNAs and miRNA stability in RISC. [RICE2]
Organism: A. thaliana
Gene: AT5G06450
PubMed Id: 28463111
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports that the receptor-like protein CLAVATA 2 (CLV2) and the pseudokinase CORYNE (CRN) are necessary to fully sense root-active CLE peptides; CRN stabilizes BAM3 expression and thus is required for BAM3-mediated CLE45 signaling.
Organism: A. thaliana
Gene: CRN
PubMed Id: 28607033
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This work describes a detailed quantitative interaction study between the novel plastidial chaperone receptor OEP61 and isoforms of the chaperone types Hsp70 and Hsp90 using the optical method of total internal reflection ellipsometry. [OEP61]
Organism: A. thaliana
Gene: TPR7
PubMed Id: 21767504
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study found that the expression of YSL3 was induced by salicylic acid in an NONEXPRESSOR OF PR1 (NPR1)-dependent pathway and a biological role of YSL3 in the innate immunity of plants was illuminated.
Organism: A. thaliana
Gene: YSL3
PubMed Id: 24845074
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study identifies ACA8 as a prominent in vivo regulator of cellular Ca2+ dynamics and reveal the existence of a Ca2+-dependent CBL-CIPK-mediated regulatory feedback mechanism, which crucially functions in the termination of Ca2+ signals.
Organism: A. thaliana
Gene: ACA8
PubMed Id: 28531251
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study found that the expression of AtBOR4, an Arabidopsis paralog of BOR1 generates plants that are tolerant of high boron levels; BOR4 is a polarly localized borate exporter that enhances boron efflux from roots
Organism: A. thaliana
Gene: BOR4
PubMed Id: 18048682
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that apoplastic GGT silencing induces a decrease in the number of organs with a high GSH demand (seeds and trichomes) as a result of resource reallocation to preserve integrity and composition.
Organism: A. thaliana
Gene: GGT1
PubMed Id: 28319794
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this study identified BIC1 (blue-light inhibitor of cryptochromes 1) as an inhibitor of plant cryptochromes that binds to CRY2 to suppress the blue light-dependent dimerization, photobody formation, phosphorylation, degradation, and physiological activities of CRY2.
Organism: A. thaliana
Gene: CRY2
PubMed Id: 27846570
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows type I metacaspases, AtMC1 and AtMC2, antagonistically control programmed cell death; AtMC1 is a positive regulator of cell death; requires conserved caspase-like putative catalytic residues for function; AtMC2 negatively regulates cell death
Organism: A. thaliana
Gene: MC1
PubMed Id: 21097903
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows VIP1 is a direct target of Agrobacterium-induced MPK3; on phosphorylation by MPK3, VIP1 relocalizes to nucleus & regulates expression of PR1; MAPK-dependent phosphorylation of VIP1 is necessary for VIP1-mediated Agrobacterium T-DNA transfer
Organism: A. thaliana
Gene: VIP1
PubMed Id: 17947581
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that ELF3 and PIF4 proteins interact in an EC-independent manner, and that this interaction prevents PIF4 from activating its transcriptional targets. It also shows that PIF4 overexpression leads to ELF3 protein destabilization.
Organism: A. thaliana
Gene: ELF3
PubMed Id: 25557667
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows that AP2C1 and CIPK9 interact to regulate K+-deficiency responses in Arabidopsis. CIPK9 functions as positive regulator whereas AP2C1 acts as a negative regulator of Arabidopsis root growth and seedling development under low-K+ conditions
Organism: A. thaliana
Gene: AT2G30020
PubMed Id: 29767755
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: our study suggests that PHB can dynamically regulate TA cell activities in a QC-independent manner, and that the SHR-PHB pathway enables a robust root growth system by coordinating the stem cell niche and TA domain.
Organism: A. thaliana
Gene: PHB
PubMed Id: 25730098
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study shows that ELF3 and PIF4 proteins interact in an EC-independent manner, and that this interaction prevents PIF4 from activating its transcriptional targets. It also shows that PIF4 overexpression leads to ELF3 protein destabilization.
Organism: A. thaliana
Gene: PIF4
PubMed Id: 25557667
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study presents 1.5 angstrom crystal structure of cpSRP43 characterized by a unique arrangement of chromodomains & ankyrin repeats; complex with the internal signal sequence of LHCPs reveals that cpSRP43 specifically recognizes a DPLG peptide motif
Organism: A. thaliana
Gene: CAO
PubMed Id: 18621669
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study reveals that the interplay between light-responsive factors PIFs and the developmental regulator TCP4 determines the cotyledon-specific light regulation of SAUR16 and SAUR50, which contributes to cotyledon closure and opening before and after de-etiolation.
Organism: A. thaliana
Gene: TCP4
PubMed Id: 30914467
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study indicated that CERK1 physically interacts with ANNEXIN 1 (ANN1), which was reported to form a calcium-permeable channel that contributes to the NaCl-induced [Ca(2+) ]cyt signal. In turn, ann1 mutants showed elevated chitin-induced rapid responses
Organism: A. thaliana
Gene: CERK1
PubMed Id: 27888535
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reveals that C-terminal phosphorylation of a water channel subunit, PIP2;1, is upregulated by an EIN3EIL1-independent ethylene signaling pathway and its water transport activity is enhanced by phosphorylation at the C-terminal S280 and S283 sites
Organism: A. thaliana
Gene: PIP2A
PubMed Id: 26476206
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed show that increased temperature promotes rapid accumulation of the TIR1 auxin co-receptor, an effect that is dependent on the molecular chaperone HSP90, and that HSP90 and SGT1 integrate temperature and auxin signaling.
Organism: A. thaliana
Gene: TIR1
PubMed Id: 26728313
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study identified a triplet repeat-associated genetic defect; Bur-0 strain has a dramatically expanded TTC/GAA repeat in the intron of the IIL1 (At4g13430) gene; repeat expansion causes an environment-dependent reduction in IIL1 activity & impairs growth
Organism: A. thaliana
Gene: IIL1
PubMed Id: 19150812
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: our study suggests that PHB can dynamically regulate TA cell activities in a QC-independent manner, and that the SHR-PHB pathway enables a robust root growth system by coordinating the stem cell niche and TA domain.
Organism: A. thaliana
Gene: SHR
PubMed Id: 25730098
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The vernalization insensitivity caused by mutant COLDAIR was rescued by the ectopic expression of the wild-type COLDAIR. Our study reveals the molecular framework in which COLDAIR lncRNA mediates the PRC2-mediated repression of FLC during vernalization.
Organism: A. thaliana
Gene: FLC
PubMed Id: 28759577
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed show that increased temperature promotes rapid accumulation of the TIR1 auxin co-receptor, an effect that is dependent on the molecular chaperone HSP90, and that HSP90 and SGT1 integrate temperature and auxin signaling.
Organism: A. thaliana
Gene: HSP90.1
PubMed Id: 26728313
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study unravels the mechanism underlying this shift of the phyA action peak from red to far-red light and show that it relies on specific molecular interactions rather than on intrinsic changes to phyA's spectral properties.
Organism: A. thaliana
Gene: PHYA
PubMed Id: 21884939
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows that AP2C1 and CIPK9 interact to regulate K+-deficiency responses in Arabidopsis. CIPK9 functions as positive regulator whereas AP2C1 acts as a negative regulator of Arabidopsis root growth and seedling development under low-K+ conditions
Organism: A. thaliana
Gene: CIPK9
PubMed Id: 29767755
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study indicated that CERK1 physically interacts with ANNEXIN 1 (ANN1), which was reported to form a calcium-permeable channel that contributes to the NaCl-induced [Ca(2+) ]cyt signal. In turn, ann1 mutants showed elevated chitin-induced rapid responses
Organism: A. thaliana
Gene: ANNAT1
PubMed Id: 27888535
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identifies 2 proteins homologous to an orphan vertebrate GPCR (GPR89) and interact with the Arabidopsis G protein alpha subunit, GPA1, have intrinsic GTP-binding and GTPase activity; these proteins are named GTG1 (At1g64990) and GTG2.
Organism: A. thaliana
Gene: GTG1
PubMed Id: 19135895
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This present study identifies the distinct physiological substrates of Arabidopsis serine/threonine/tyrosine protein kinase (STYK) and its role in seed oil accumulation; the role of Arabidopsis OLE1, a major seed oil body protein has also been elucidated.
Organism: A. thaliana
Gene: AT2G24360
PubMed Id: 29348626
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study identified an overlapping set of genes co-regulated by ATX1 and AtMTM under drought conditions; propose that these shared genes represent ultimate targets of partially overlapping branches of the pathways of nuclear ATX1 and cytoplasmic AtMTM1
Organism: A. thaliana
Gene: ATX1
PubMed Id: 19901554
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Together with previous findings, the results of this study strengthen the notion that mutations in genes MLO2, MLO6 and MLO12 not only restrict powdery mildew colonization, but also affect interactions with a number of other phytopathogens.
Organism: A. thaliana
Gene: MLO12
PubMed Id: 28839137
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: With TSF-overexpressing plants as the rootstock, the flowering time of ft tsf scion plants was only slightly accelerated. This study did not detect movement of TSF from the roots into the shoot of the scion plants.
Organism: A. thaliana
Gene: TSF
PubMed Id: 26139827
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This present study identifies the distinct physiological substrates of Arabidopsis serine/threonine/tyrosine protein kinase (STYK) and its role in seed oil accumulation; the role of Arabidopsis OLE1, a major seed oil body protein has also been elucidated.
Organism: A. thaliana
Gene: OLEO1
PubMed Id: 29348626
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggests that AtGH3.5 conjugates auxins (i.e., IAA and PAA) and benzoates (i.e., SA and BA) to mediate crosstalk between different metabolic pathways, broadening the potential roles for GH3 acyl acid amido synthetases in plants.
Organism: A. thaliana
Gene: WES1
PubMed Id: 27849615
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: HMA3 drives the variation in Cd accumulation we observe in a world-wide sample of Arabidopsis thaliana; study identified 10 major HMA3 protein variants, of which 5 contribute to reduce Cd accumulation in leaves of A. thaliana.
Organism: A. thaliana
Gene: HMA3
PubMed Id: 22969436
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: DME and ROS1 have a significant 5-hydroxymethylcytosine (5hmC) excision activity in vitro, although the study detected no 5hmC in Arabidopsis, suggesting that it is very unlikely for plants to utilize 5hmC as a DNA demethylation intermediate.
Organism: A. thaliana
Gene: DME
PubMed Id: 24661881
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study provides insight into the key amino acid changes that confer sugar donor selectivity on UGTs, and demonstrates the usefulness of natural variation in understanding the structure-function relationship of enzymes involved in specialized metabolism. [UGT89A2]
Organism: A. thaliana
Gene: AT5G03490
PubMed Id: 27411741
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study demonstrated that EIN2 harboring a functional nuclear localization signal is subjected to a cleavage event, followed by transporting its carboxyl end (CEND) into the nucleus, where CEND acts to stabilize EIN3 and activate ethylene responses
Organism: A. thaliana
Gene: EIN2
PubMed Id: 23070300
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Together with previous findings, the results of this study strengthen the notion that mutations in genes MLO2, MLO6 and MLO12 not only restrict powdery mildew colonization, but also affect interactions with a number of other phytopathogens.
Organism: A. thaliana
Gene: MLO2
PubMed Id: 28839137
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reports MPK8 connects protein phosphorylation, Ca(2)+ and ROS in wound-signaling pathway; suggests 2 major activation modes, Ca(2)+/CaMs and MAP kinase phosphorylation cascade, converge at MPK8 to monitor or maintain an essential part of ROS homeostasis
Organism: A. thaliana
Gene: ATMPK8
PubMed Id: 21419340
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Together with previous findings, the results of this study strengthen the notion that mutations in genes MLO2, MLO6 and MLO12 not only restrict powdery mildew colonization, but also affect interactions with a number of other phytopathogens.
Organism: A. thaliana
Gene: MLO6
PubMed Id: 28839137
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: With TSF-overexpressing plants as the rootstock, the flowering time of ft tsf scion plants was only slightly accelerated. This study did not detect movement of TSF from the roots into the shoot of the scion plants.
Organism: A. thaliana
Gene: FT
PubMed Id: 26139827
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed show that PUCHI expression is initiated after the first round of asymmetric cell division of lateral root (LR) founder cells and that premature induction of PUCHI during the preinitiation phase disrupts LR primordium formation.
Organism: A. thaliana
Gene: LBD16
PubMed Id: 31310684
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