help  | faq  | software  | BAR

Search our database by keyword

- or -

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, pathways, authors, ontology terms, etc. (e.g. eve, embryo, zen, allele)
  • Use OR to search for either of two terms (e.g. fly OR drosophila) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. dros* for partial matches or fly AND NOT embryo to exclude a term

Search results 1201 to 1300 out of 1358 for cell

Organism restricted to A. thaliana (x)

<< First    < Previous  |  Next >    Last >>
0.044s

Categories

Hits by Category

Organism: A. thaliana
« show all
Type Details Score
Protein
LEA32_ARATH | Q9LJ95
Organism . Name: Arabidopsis thaliana
Length: 256  
•
•
•
•
•
Protein
A0A1P8BCF4_ARATH | A0A1P8BCF4
Organism . Name: Arabidopsis thaliana
Length: 213  
•
•
•
•
•
Gene
AT5G23630 | locus:2171686 | PDR2 | phosphate deficiency response 2
Length: 7720  
Chromosome Location: Chr5: 7960478-7968197
Organism . Short Name: A. thaliana
TAIR Computational Description: phosphate deficiency response 2;(source:Araport11)
TAIR Curator Summary: A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure. MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots.
TAIR Short Description: phosphate deficiency response 2
TAIR Aliases: MIA, PDR2
•
•
•
•
•
Gene
AT2G01570 | locus:2005516 | RGA1 | REPRESSOR OF GA1-3 1
Length: 2322  
Chromosome Location: Chr2: 255247-257568
Organism . Short Name: A. thaliana
TAIR Computational Description: GRAS family transcription factor family protein;(source:Araport11)
TAIR Curator Summary: Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
TAIR Short Description: GRAS family transcription factor family protein
TAIR Aliases: RGA, RGA1, RGA24
•
•
•
•
•
Gene
AT3G17360 | locus:2089000 | POK1 | phragmoplast orienting kinesin 1
Length: 10661  
Chromosome Location: Chr3: 5935880-5946540
Organism . Short Name: A. thaliana
TAIR Computational Description: phragmoplast orienting kinesin 1;(source:Araport11)
TAIR Curator Summary: PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.
TAIR Short Description: phragmoplast orienting kinesin 1
TAIR Aliases: POK1
•
•
•
•
•
Gene
AT3G19050 | locus:2085844 | POK2 | phragmoplast orienting kinesin 2
Length: 12530  
Chromosome Location: Chr3: 6577724-6590253
Organism . Short Name: A. thaliana
TAIR Computational Description: phragmoplast orienting kinesin 2;(source:Araport11)
TAIR Curator Summary: PHRAGMOPLAST ORIENTING KINESIN 2 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK2 constructs were broader than those for POK1; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.
TAIR Short Description: phragmoplast orienting kinesin 2
TAIR Aliases: POK2
•
•
•
•
•
Gene
AT1G57820 | locus:2009420 | VIM1 | VARIANT IN METHYLATION 1
Length: 4135  
Chromosome Location: Chr1: 21413981-21418115
Organism . Short Name: A. thaliana
TAIR Computational Description: Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
TAIR Curator Summary: Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.
TAIR Short Description: Zinc finger (C3HC4-type RING finger) family protein
TAIR Aliases: ORTH2, VIM1
•
•
•
•
•
Protein
INV1_ARATH | Q43866
Organism . Name: Arabidopsis thaliana
Length: 584  
•
•
•
•
•
Gene
AT4G19810 | locus:2134025 | ChiC | class V chitinase
Length: 2590  
Chromosome Location: Chr4: 10763206-10765795
Organism . Short Name: A. thaliana
TAIR Computational Description: Glycosyl hydrolase family protein with chitinase insertion domain-containing protein;(source:Araport11)
TAIR Curator Summary: ChiC encodes a Class V chitinase that is a part of glycoside hydrolase family 18 based on CAZy groupings. It appears to primarily act as an exochitinase in vitro where it predominantly cleaves a chitobiose (GlcNAc)2 residue from the non-reducing end of a chitin oligosaccharide. However, it shows some minor endochitinase activity in vitro, as well. A putative 24 amino-acid signal peptide may direct this protein to the secretory system and it has been detected in cell wall apoplastic fluid. RT-PCR experiments demonstrate that ChiC transcript levels are increased in response to abscisisc acid, jasmonic acid, and NaCl stress. Microarray results also suggest that transcript levels rise in response to osmotic stress, two fungal pathogens, a bacterial pathogen, and the elicitor flagellin. The mRNA is cell-to-cell mobile.
TAIR Short Description: Glycosyl hydrolase family protein with chitinase insertion domain
TAIR Aliases: ChiC
•
•
•
•
•
Gene
AT4G23650 | locus:2128409 | CDPK6 | calcium-dependent protein kinase 6
Length: 2894  
Chromosome Location: Chr4: 12324758-12327651
Organism . Short Name: A. thaliana
TAIR Computational Description: calcium-dependent protein kinase 6;(source:Araport11)
TAIR Curator Summary: Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family.
TAIR Short Description: calcium-dependent protein kinase 6
TAIR Aliases: AtCDPK6, CDPK6, CPK3
•
•
•
•
•
Gene
AT1G23080 | locus:2201225 | PIN7 | PIN-FORMED 7
Length: 3462  
Chromosome Location: Chr1: 8180189-8183650
Organism . Short Name: A. thaliana
TAIR Computational Description: Auxin efflux carrier family protein;(source:Araport11)
TAIR Curator Summary: Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.
TAIR Short Description: Auxin efflux carrier family protein
TAIR Aliases: ATPIN7, PIN7
•
•
•
•
•
Gene
AT5G50600 | locus:2159747 | HSD1 | hydroxysteroid dehydrogenase 1
Length: 2236  
Chromosome Location: Chr5: 20589702-20591937
Organism . Short Name: A. thaliana
TAIR Computational Description: hydroxysteroid dehydrogenase 1;(source:Araport11)
TAIR Curator Summary: Encodes a hydroxysteroid dehydrogenase shown to act as a NADP+-dependent 11β-,17β-hydroxysteroid dehydrogenase/17β-ketosteroid reductase called HSD1. Two copies of HSD1 (At5g50600 and At5g50700) exist in the Arabidopsis genome as a result of an exact 33-kb duplication on chromosome 5 encompassing seven genes. There are five homologs of HSD1 in Arabidopsis (HSD2-At3g47350, HSD3-At3g47360, HSD4-At5g50590, HSD4-At5g50690 and HSD6-At5g50770; HSD4 has two copies due to the same gene duplication event occurred to HSD1) (Plant Cell Physiology 50:1463). At5g50690 is also named as HSD7 (Plant Physiology 145:87). HSD1 is identified from the proteome of oil bodies from mature seeds. Transcription of HSD1 is specifically and highly induced in oil-accumulating tissues of mature seeds; transcript disappears during germination. To date, the endogenous substrates of this enzyme are not known.
TAIR Short Description: hydroxysteroid dehydrogenase 1
TAIR Aliases: ATHSD1, HSD1
•
•
•
•
•
Gene
AT3G59420 | locus:2081227 | CR4 | crinkly4
Length: 3535  
Chromosome Location: Chr3: 21959646-21963180
Organism . Short Name: A. thaliana
TAIR Computational Description: crinkly4;(source:Araport11)
TAIR Curator Summary: Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes. ACR4 phosphorylates the PROTEIN PHOSPHATASE 2A-3 (PP2A-3) catalytic subunit of the PP2A phosphatase holoenzyme and PP2A
TAIR Short Description: crinkly4
TAIR Aliases: ACR4, CR4
•
•
•
•
•
Gene
AT4G38130 | locus:2120948 | HD1 | histone deacetylase 1
Length: 3232  
Chromosome Location: Chr4: 17896278-17899509
Organism . Short Name: A. thaliana
TAIR Computational Description: histone deacetylase 1;(source:Araport11)
TAIR Curator Summary: Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. HDA19 acts in a WOX5 mediated pathway to maintain columella stem cell fate by repressing CDF4. Class I RPD3-like family HDAC member which controls positive responses to salinity stress.
TAIR Short Description: histone deacetylase 1
TAIR Aliases: ATHD1, ATHDA19, HD1, HDA1, HDA19, HDAC19, RPD3A
•
•
•
•
•
Gene
AT2G25180 | locus:2040194 | RR12 | response regulator 12
Length: 2972  
Chromosome Location: Chr2: 10724301-10727272
Organism . Short Name: A. thaliana
TAIR Computational Description: response regulator 12;(source:Araport11)
TAIR Curator Summary: Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Also involved in cytokinin-dependent inhibition of hypocotyl elongation and cytokinin-dependent greening and shooting in tissue culture. ARR1, ARR10, and ARR12 are redundant regulators of drought response, with ARR1 being the most critical.The retention of leaf water content, maintenance of cell membrane stability, and enhancement of anthocyanin biosynthesis were found to contribute to the enhanced drought tolerance of the arr1,10,12 triple mutant. ARR1, ARR10 and ARR12 redundantly bind to the promoter of WUSCHEL (WUS), directly activate its transcription. In parallel, ARR1, ARR10 and ARR12 repress the expression of YUCCAs (YUCs), which encode a key enzyme for auxin biosynthesis, indirectly promoting WUS induction. The regulation of ARR1, ARR10 and ARR12 on WUS and YUCs is required for regeneration and maintenance of shoot meristem.
TAIR Short Description: response regulator 12
TAIR Aliases: ARR12, AtARR12, RR12
•
•
•
•
•
Gene
AT1G05560 | locus:2201031 | UGT75B1 | UDP-glucosyltransferase 75B1
Length: 2136  
Chromosome Location: Chr1: 1645300-1647435
Organism . Short Name: A. thaliana
TAIR Computational Description: UDP-glucosyltransferase 75B1;(source:Araport11)
TAIR Curator Summary: A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques.
TAIR Short Description: UDP-glucosyltransferase 75B1
TAIR Aliases: UGT1, UGT75B1
•
•
•
•
•
Gene
AT3G47450 | locus:2099520 | NOA1 | NO ASSOCIATED 1
Length: 3280  
Chromosome Location: Chr3: 17483068-17486347
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. Mutant analyses show that this protein regulates growth and hormonal signaling and attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence, cell death, nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins, including RBCL, ClpP1, and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase, but, the synthase activity was later disproven. In addition, new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts. Its localization to the chloroplast is enhanced by S-acylation.
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: ATNOA1, ATNOS1, COE2, NOA1, NOS1, RIF1, SVR10
•
•
•
•
•
Gene
AT5G37500 | locus:2169866 | GORK | gated outwardly-rectifying K channel
Length: 5989  
Chromosome Location: Chr5: 14889245-14895233
Organism . Short Name: A. thaliana
TAIR Computational Description: gated outwardly-rectifying K+ channel;(source:Araport11)
TAIR Curator Summary: Encodes a guard cell outward potassium channel. Belongs to the Shaker family K+ channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.
TAIR Short Description: gated outwardly-rectifying K+ channel
TAIR Aliases: GORK
•
•
•
•
•
Protein
INV4_ARATH | Q8W413
Organism . Name: Arabidopsis thaliana
Length: 591  
•
•
•
•
•
Gene
AT4G22200 | locus:2132065 | KT2/3 | potassium transport 2/3
Length: 4209  
Chromosome Location: Chr4: 11746490-11750698
Organism . Short Name: A. thaliana
TAIR Computational Description: potassium transport 2/3;(source:Araport11)
TAIR Curator Summary: Encodes AKT2, a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential. AKT2 belongs to the Shaker family K+ channels which include the following groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
TAIR Short Description: potassium transport 2/3
TAIR Aliases: AKT2, AKT2/3, AKT3, KT2/3
•
•
•
•
•
Gene
AT1G31880 | locus:2034486 | BRX | BREVIS RADIX
Length: 4743  
Chromosome Location: Chr1: 11445490-11450232
Organism . Short Name: A. thaliana
TAIR Computational Description: DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein;(source:Araport11)
TAIR Curator Summary: Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth. Plasma-membrane-associated element of a molecular rheostat that modulates auxin flux through developing protophloem sieve elements (PPSEs) while interacting with PAX, thereby timing PPSE differentiation. Dampens PIN-mediated auxin efflux.
TAIR Short Description: DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
TAIR Aliases: BRX, NLM9
•
•
•
•
•
Protein
RETIC_ARATH | B9DFK5
Organism . Name: Arabidopsis thaliana
Length: 432  
•
•
•
•
•
Protein
RETIC_ARATH-2 | B9DFK5-2
Organism . Name: Arabidopsis thaliana
Length: 347  
•
•
•
•
•
Protein
FZR2_ARATH | Q8L3Z8
Organism . Name: Arabidopsis thaliana
Length: 483  
•
•
•
•
•
Protein
FZR1_ARATH | Q8VZS9
Organism . Name: Arabidopsis thaliana
Length: 475  
•
•
•
•
•
Protein
GCD1_ARATH-2 | Q9LVA9-2
Organism . Name: Arabidopsis thaliana
Length: 383  
•
•
•
•
•
Protein
EXTN2_ARATH | Q9M1G9
Organism . Name: Arabidopsis thaliana
Length: 743  
•
•
•
•
•
Protein
PLRX4_ARATH | O81765
Organism . Name: Arabidopsis thaliana
Length: 699  
•
•
•
•
•
Protein
PLRX4_ARATH-2 | O81765-2
Organism . Name: Arabidopsis thaliana
Length: 218  
•
•
•
•
•
Protein
PLRX1_ARATH | Q9LJ64
Organism . Name: Arabidopsis thaliana
Length: 956  
•
•
•
•
•
Protein
F4IKR2_ARATH | F4IKR2
Organism . Name: Arabidopsis thaliana
Length: 116  
•
•
•
•
•
Gene
AT2G26330 | locus:2005507 | ER | ERECTA
Length: 6583  
Chromosome Location: Chr2: 11208080-11214662
Organism . Short Name: A. thaliana
TAIR Computational Description: Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
TAIR Curator Summary: Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. ER binds to the peptides STOMAGEN and EPF2 which compete for the same binding site. The ER-EFP2 complex activates MAPK signaling that inhibits stomatal development. ER-STOMAGEN does not activate MAPK signaling. Plants harboring loss of function alleles of er are more susceptible to heat stress than wild type. In Arabidopsis and other organisms, overexpression of ER confers thermotolerance via as yet undefined mechanisms. Functions with HYL1 to negatively regulate megaspore mother cell fate in ovule nucellus.
TAIR Short Description: Leucine-rich receptor-like protein kinase family protein
TAIR Aliases: ER, QRP1
•
•
•
•
•
Gene
AT3G60190 | locus:2101482 | DL1E | DYNAMIN-like 1E
Length: 3808  
Chromosome Location: Chr3: 22244169-22247976
Organism . Short Name: A. thaliana
TAIR Computational Description: DYNAMIN-like 1E;(source:Araport11)
TAIR Curator Summary: At3g60190 encodes Arabidopsis dynamin-related protein 1E, DRP1E, also known as EDR3, ADL4 and ADL1E, which is 624 amino acid residues long, has a predicted mass of 69.8 kDa and a pI of 7.5. Dynamin-related protein 1E belongs to a plant-specific subclass of dynamin-related proteins (DRP1), consisting of five members in Arabidopsis (A, B, C, D, E). This class is characterized by having an N-terminal GTPase domain, a central �dynamin 2� domain and a C-terminal GTPase effector domain (GED), a typical structure for plant dynamin-related proteins. However, this class lacks a PH domain and a proline-rich domain, which are found in classical animal dynamin-like proteins. Based on work on animal dynamins, the plant DRP1 proteins should be able to form polymeric structures that wrap around membranes to facilitate membrane tubulation and pinching off of vesicles, processes that are essential to vesicle trafficking and membrane compartmentalization. The edr3 mutation causes a P77L substitution in the G2 motif of the GTPase domain of DRP1E. edr3 mutant Arabidopsis plants display enhanced cell death in response to powdery mildew infection.
TAIR Short Description: DYNAMIN-like 1E
TAIR Aliases: ADL1E, ADL4, ADLP2, DL1E, DRP1E, EDR3
•
•
•
•
•
Protein
INV2_ARATH | Q1PEF8
Organism . Name: Arabidopsis thaliana
Length: 590  
•
•
•
•
•
Gene
AT2G17290 | locus:2827528 | CPK6 | calcium dependent protein kinase 6
Length: 3333  
Chromosome Location: Chr2: 7516330-7519662
Organism . Short Name: A. thaliana
TAIR Computational Description: Calcium-dependent protein kinase family protein;(source:Araport11)
TAIR Curator Summary: Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. The protein kinase CPK6 is shown in biochemical assays to be directly activated by elevations in calcium concentrations in the physiological range (Laanements et al., 2013 PlantPhys.; PMID: 23766366). These data correlate with the in vivo function of CPK6 in Ca2+ and ABA activation of S-type anion channels (Mori et al., 2006 PLoS Biol.; PMID: 17032064) and the ability of CPK6 to mediate ABA activation of SLAC1 (Brandt et al., 2012 PNAS; PMID: 22689970). The mRNA is cell-to-cell mobile.
TAIR Short Description: Calcium-dependent protein kinase family protein
TAIR Aliases: ATCDPK3, ATCPK6, CPK6
•
•
•
•
•
Protein
INV6_ARATH-2 | Q8W4S6-2
Organism . Name: Arabidopsis thaliana
Length: 427  
•
•
•
•
•
Gene
AT2G27250 | locus:2005502 | CLV3 | CLAVATA3
Length: 820  
Chromosome Location: Chr2: 11664978-11665797
Organism . Short Name: A. thaliana
TAIR Computational Description: CLAVATA3;(source:Araport11)
TAIR Curator Summary: One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) was first reported to be a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline (Ito et al., Science 2006, 313:842; Kondo et al., Science 2006, 313:845). Ohyama et al. (2009) later reported that the active mature CLV3 is a 13-amino-acid arabinosylated glycopeptide (Nature Chemical Biology, 5:578). CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function. Results obtained from whole seedlings challenge the concept that the immune receptor FLS2 perceives the meristematic regulatory peptide CLV3p in mesophyll, seedlings, and SAM cells and that CLV3p contributes to SAM immunity against bacterial infection (PMID:22923673).
TAIR Short Description: CLAVATA3
TAIR Aliases: AtCLV3, CLV3
•
•
•
•
•
Protein
RCCR_ARATH | Q8LDU4
Organism . Name: Arabidopsis thaliana
Length: 319  
•
•
•
•
•
Protein
CPP1_ARATH | Q9FN50
Organism . Name: Arabidopsis thaliana
Length: 258  
•
•
•
•
•
Protein
GCD1_ARATH | Q9LVA9
Organism . Name: Arabidopsis thaliana
Length: 420  
•
•
•
•
•
Protein
CAD1_ARATH | Q9C7N2
Organism . Name: Arabidopsis thaliana
Length: 561  
•
•
•
•
•
Protein
INV6_ARATH | Q8W4S6
Organism . Name: Arabidopsis thaliana
Length: 550  
•
•
•
•
•
Protein
DIM_ARATH | Q39085
Organism . Name: Arabidopsis thaliana
Length: 561  
•
•
•
•
•
Protein
CKB11_ARATH | P25859
Organism . Name: Arabidopsis thaliana
Length: 309  
•
•
•
•
•
Protein
FAH_ARATH | Q8RW90
Organism . Name: Arabidopsis thaliana
Length: 421  
•
•
•
•
•
Protein
PATH1_ARATH | F4J077
Organism . Name: Arabidopsis thaliana
Length: 782  
•
•
•
•
•
Protein
ECP63_ARATH | Q9SKP0
Organism . Name: Arabidopsis thaliana
Length: 448  
•
•
•
•
•
Protein
F4ICM3_ARATH | F4ICM3
Organism . Name: Arabidopsis thaliana
Length: 570  
•
•
•
•
•
Protein
INV3_ARATH | Q67XZ3
Organism . Name: Arabidopsis thaliana
Length: 594  
•
•
•
•
•
Protein
BOP1_ARATH | F4IH25
Organism . Name: Arabidopsis thaliana
Length: 753  
•
•
•
•
•
Protein
RCD1_ARATH-2 | Q8RY59-2
Organism . Name: Arabidopsis thaliana
Length: 588  
•
•
•
•
•
Protein
TCP2_ARATH | Q93V43
Organism . Name: Arabidopsis thaliana
Length: 365  
•
•
•
•
•
mRNA
AT4G39340.1
Length: 384  
Chromosome Location: Chr4: 18293129-18293512
•
•
•
•
•
mRNA
AT1G76750.1
Length: 682  
Chromosome Location: Chr1: 28811040-28811721
•
•
•
•
•
mRNA
AT2G21740.1
Length: 402  
Chromosome Location: Chr2: 9281986-9282387
•
•
•
•
•
mRNA
AT2G21750.1
Length: 408  
Chromosome Location: Chr2: 9283367-9283774
•
•
•
•
•
mRNA
AT1G21250.1
Length: 2770  
Chromosome Location: Chr1: 7439171-7442113
•
•
•
•
•
mRNA
AT1G32230.2
Length: 2806  
Chromosome Location: Chr1: 11611891-11616218
•
•
•
•
•
mRNA
AT1G32230.4
Length: 3086  
Chromosome Location: Chr1: 11611928-11616218
•
•
•
•
•
mRNA
AT1G32230.5
Length: 2931  
Chromosome Location: Chr1: 11611997-11616218
•
•
•
•
•
mRNA
AT1G32230.6
Length: 4188  
Chromosome Location: Chr1: 11611998-11617419
•
•
•
•
•
mRNA
AT1G32230.1
Length: 2582  
Chromosome Location: Chr1: 11612118-11616218
•
•
•
•
•
mRNA
AT1G32230.3
Length: 2671  
Chromosome Location: Chr1: 11612118-11616218
•
•
•
•
•
mRNA
AT5G62850.2
Length: 1370  
Chromosome Location: Chr5: 25229938-25231822
•
•
•
•
•
mRNA
AT5G62850.1
Length: 1306  
Chromosome Location: Chr5: 25229938-25231844
•
•
•
•
•
mRNA
AT5G64720.1
Length: 529  
Chromosome Location: Chr5: 25872305-25872833
•
•
•
•
•
Protein
RCD1_ARATH | Q8RY59
Organism . Name: Arabidopsis thaliana
Length: 589  
•
•
•
•
•
Protein
DAD1_ARATH | Q39080
Organism . Name: Arabidopsis thaliana
Length: 115  
•
•
•
•
•
Protein
NLTP2_ARATH | Q9S7I3
Organism . Name: Arabidopsis thaliana
Length: 118  
•
•
•
•
•
Protein
DAD2_ARATH-2 | O22622-2
Organism . Name: Arabidopsis thaliana
Length: 53  
•
•
•
•
•
Protein
NEDD1_ARATH | B3H5K9
Organism . Name: Arabidopsis thaliana
Length: 782  
•
•
•
•
•
Protein
NEDD1_ARATH-2 | B3H5K9-2
Organism . Name: Arabidopsis thaliana
Length: 781  
•
•
•
•
•
Protein
CDKA1_ARATH | P24100
Organism . Name: Arabidopsis thaliana
Length: 294  
•
•
•
•
•
Protein
MPC3_ARATH-2 | Q8LD38-2
Organism . Name: Arabidopsis thaliana
Length: 146  
•
•
•
•
•
Protein
PCS1L_ARATH | Q9LZL3
Organism . Name: Arabidopsis thaliana
Length: 453  
•
•
•
•
•
Protein
CDC23_ARATH | Q9STS3
Organism . Name: Arabidopsis thaliana
Length: 579  
•
•
•
•
•
Pseudogene
AT5G27043 | locus:1006230438 | AT5G27043 | -
 
Length: 400  
Chromosome Location: Chr5: 9519656-9520055
Organism . Short Name: A. thaliana
TAIR Computational Description: pseudogene of cell division cycle 20.2;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
•
•
•
•
•
Pseudogene
AT1G16550 | locus:2824890 | AT1G16550 | -
 
Length: 2543  
Chromosome Location: Chr1: 5665658-5668200
Organism . Short Name: A. thaliana
TAIR Computational Description: pseudogene of cell division cycle 48C;(source:Araport11)
TAIR Curator Summary: Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167
TAIR Short Description: NULL
•
•
•
•
•
Pseudogene
AT1G19810 | locus:2013084 | AT1G19810 | -
 
Length: 1607  
Chromosome Location: Chr1: 6848382-6849988
Organism . Short Name: A. thaliana
TAIR Computational Description: pseudogene of cell division cycle 48C;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
•
•
•
•
•
Protein
MPC3_ARATH | Q8LD38
Organism . Name: Arabidopsis thaliana
Length: 108  
•
•
•
•
•
Protein
NAKR1_ARATH | Q8LDS4
Organism . Name: Arabidopsis thaliana
Length: 319  
•
•
•
•
•
Protein
IQD21_ARATH | Q9ASW3
Organism . Name: Arabidopsis thaliana
Length: 471  
•
•
•
•
•
Protein
PAO_ARATH | Q9FYC2
Organism . Name: Arabidopsis thaliana
Length: 537  
•
•
•
•
•
Protein
DAD2_ARATH | O22622
Organism . Name: Arabidopsis thaliana
Length: 115  
•
•
•
•
•
Protein
SWET5_ARATH | Q9FM10
Organism . Name: Arabidopsis thaliana
Length: 240  
•
•
•
•
•
Protein
CDC16_ARATH | B3DNN5
Organism . Name: Arabidopsis thaliana
Length: 543  
•
•
•
•
•
mRNA
AT4G33260.1
Length: 1940  
Chromosome Location: Chr4: 16041006-16043549
•
•
•
•
•
mRNA
AT4G33260.2
Length: 1724  
Chromosome Location: Chr4: 16041074-16043457
•
•
•
•
•
mRNA
AT4G33270.1
Length: 2097  
Chromosome Location: Chr4: 16044169-16046937
•
•
•
•
•
mRNA
AT4G37000.1
Length: 1508  
Chromosome Location: Chr4: 17442612-17444295
•
•
•
•
•
mRNA
AT5G03340.1
Length: 2854  
Chromosome Location: Chr5: 809830-813293
•
•
•
•
•
mRNA
AT5G26900.1
Length: 1335  
Chromosome Location: Chr5: 9463752-9465086
•
•
•
•
•
mRNA
AT5G27080.1
Length: 1329  
Chromosome Location: Chr5: 9529753-9531081
•
•
•
•
•
mRNA
AT5G27570.1
Length: 1355  
Chromosome Location: Chr5: 9734896-9736250
•
•
•
•
•
mRNA
AT2G03670.1
Length: 2019  
Chromosome Location: Chr2: 1117485-1120458
•
•
•
•
•
mRNA
AT2G03670.2
Length: 2076  
Chromosome Location: Chr2: 1117486-1120436
•
•
•
•
•
mRNA
AT2G29680.2
Length: 2209  
Chromosome Location: Chr2: 12689171-12693121
•
•
•
•
•
mRNA
AT2G29680.1
Length: 1643  
Chromosome Location: Chr2: 12689581-12692872
•
•
•
•
•
mRNA
AT2G34690.1
Length: 1363  
Chromosome Location: Chr2: 14629986-14632082
•
•
•
•
•
mRNA
AT1G09770.1
Length: 3199  
Chromosome Location: Chr1: 3161832-3165616
•
•
•
•
•





BAR logo CAGEF logo CAGEF logo Araport logo JCVI logo TACC logo

InterMine is funded by the and interoperation is funded by

© 2002 - 2021 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom