ThaleMine: Keyword Search

SO Term

Description:

SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater.

•

SO Term

SO:0001013 | MNP

Description:

A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT.

•

SO Term

SO:0001483 | SNV

Description:

SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist.

•

SO Term

SO:0001830 | AFLP_fragment

Description:

A PCR product obtained by applying the AFLP technique, based on a restriction enzyme digestion of genomic DNA and an amplification of the resulting fragments.

•

SO Term

SO:0000441 | ss_oligo

Description:

A single stranded oligonucleotide.

•

SO Term

SO:0000757 | single_stranded_cDNA

Description:

DNA synthesized from RNA by reverse transcriptase, single stranded.

•

SO Term

SO:0000193 | RFLP_fragment

Description:

A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme.

•

SO Term

SO:0000956 | single_stranded_DNA_chromosome

Description:

Structural unit composed of a self-replicating, single-stranded DNA molecule.

•

SO Term

SO:0000962 | single_stranded_RNA_chromosome

Description:

Structural unit composed of a self-replicating, single-stranded RNA molecule.

•

SO Term

SO:0001019 | copy_number_variation

Description:

A variation that increases or decreases the copy number of a given region.

•

SO Term

SO:1000008 | point_mutation

Description:

A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence.

•

SO Term

SO:0000959 | linear_single_stranded_DNA_chromosome

Description:

Structural unit composed of a self-replicating, single-stranded, linear DNA molecule.

•

SO Term

SO:0000960 | circular_single_stranded_DNA_chromosome

Description:

Structural unit composed of a self-replicating, single-stranded, circular DNA molecule.

•

SO Term

SO:0000963 | linear_single_stranded_RNA_chromosome

Description:

Structural unit composed of a self-replicating, single-stranded, linear RNA molecule.

•

SO Term

SO:0000966 | circular_single_stranded_RNA_chromosome

Description:

Structural unit composed of a self-replicating, single-stranded, circular DNA molecule.

•

SO Term

SO:0001695 | restriction_enzyme_single_strand_overhang

Description:

A terminal region of DNA sequence where the end of the region is not blunt ended.

•

SO Term

SO:0000207 | simple_sequence_length_variation

Description:

SSLP are a kind of sequence alteration where the number of repeated sequences in intergenic regions may differ.

•

SO Term

SO:0001991 | consensus_AFLP_fragment

Description:

A consensus AFLP fragment is an AFLP sequence produced from any alignment algorithm which uses assembled multiple AFLP sequences as input.

•

SO Term

SO:0002007 | MNV

Description:

An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence.

•

SO Term

SO:0001694 | single_strand_restriction_enzyme_cleavage_site

Description:

A restriction enzyme cleavage site whereby only one strand is cut.

•

SO Term

SO:0001854 | smFISH_probe

Description:

A smFISH is a probe that binds RNA in a single molecule in situ hybridization experiment.

•

SO Term

SO:0000347 | nucleotide_match

Description:

A match against a nucleotide sequence.

•

SO Term

SO:0001236 | base

Description:

A base is a sequence feature that corresponds to a single unit of a nucleotide polymer.

•

SO Term

SO:0000472 | tiling_path

Description:

A set of regions which overlap with minimal polymorphism to form a linear sequence.

•

SO Term

SO:0001932 | restriction_enzyme_five_prime_single_strand_overhang

Description:

A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end.

•

SO Term

SO:0001933 | restriction_enzyme_three_prime_single_strand_overhang

Description:

A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end.

•

SO Term

SO:0000984 | single

Description:

When a nucleotide polymer has only one strand.

•

SO Term

SO:1000035 | duplication

Description:

An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome.

•

SO Term

SO:0000181 | translated_nucleotide_match

Description:

A match against a translated sequence.

•

SO Term

SO:0001199 | ss_RNA_viral_sequence

Description:

A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA.

•

SO Term

SO:0005845 | exon_of_single_exon_gene

Description:

An exon that is the only exon in a gene.

•

SO Term

SO:0000714 | nucleotide_motif

Description:

A region of nucleotide sequence corresponding to a known motif.

•

SO Term

SO:0001655 | nucleotide_binding_site

Description:

A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues.

•

SO Term

SO:0001202 | ambisense_ssRNA_viral_sequence

Description:

A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity.

•

SO Term

SO:0001654 | nucleotide_to_protein_binding_site

Description:

A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues.

•

SO Term

SO:0000159 | deletion

Description:

The point at which one or more contiguous nucleotides were excised.

•

SO Term

SO:0000667 | insertion

Description:

The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence.

•

SO Term

SO:0002204 | nucleotide_cleavage_site

Description:

A point in nucleic acid where a cleavage event occurs.

•

SO Term

SO:0001200 | negative_sense_ssRNA_viral_sequence

Description:

A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation.

•

SO Term

SO:0001201 | positive_sense_ssRNA_viral_sequence

Description:

A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host.

•

SO Term

SO:0000178 | operon

Description:

A group of contiguous genes transcribed as a single (polycistronic) mRNA from a single regulatory region.

•

SO Term

SO:1000028 | intrachromosomal_mutation

Description:

A chromosomal structure variation within a single chromosome.

•

SO Term

SO:0000988 | circular

Description:

A quality of a nucleotide polymer that has no terminal nucleotide residues.

•

SO Term

SO:0000107 | sequencing_primer

Description:

A single stranded oligo used for polymerase chain reaction.

•

SO Term

SO:0000121 | forward_primer

Description:

A single stranded oligo used for polymerase chain reaction.

•

SO Term

SO:0000132 | reverse_primer

Description:

A single stranded oligo used for polymerase chain reaction.

•

SO Term

SO:0000604 | editing_block

Description:

Edited mRNA sequence mediated by a single guide RNA (SO:0000602).

•

SO Term

SO:1000043 | Robertsonian_fusion

Description:

A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere.

•

SO Term

SO:0000306 | methylated_DNA_base_feature

Description:

A nucleotide modified by methylation.

•

SO Term

SO:0000726 | repeat_unit

Description:

The simplest repeated component of a repeat region. A single repeat.

•

SO Term

SO:0001068 | polypeptide_repeat

Description:

A polypeptide_repeat is a single copy of an internal sequence repetition.

•

SO Term

SO:0001472 | primer_match

Description:

A nucleotide match to a primer sequence.

•

SO Term

SO:0002203 | replication_start_site

Description:

A nucleotide site from which replication initiates.

•

SO Term

SO:0001237 | amino_acid

Description:

A sequence feature that corresponds to a single amino acid residue in a polypeptide.

•

SO Term

SO:0001004 | low_complexity

Description:

When a sequence does not contain an equal distribution of all four possible nucleotide bases or does not contain all nucleotide bases.

•

SO Term

SO:0000177 | cross_genome_match

Description:

A nucleotide match against a sequence from another organism.

•

SO Term

SO:0001042 | phage_sequence

Description:

The nucleotide sequence of a virus that infects bacteria.

•

SO Term

SO:0000684 | nuclease_sensitive_site

Description:

A region of nucleotide sequence targeted by a nuclease enzyme.

•

SO Term

SO:1000036 | inversion

Description:

A continuous nucleotide sequence is inverted in the same position.

•

SO Term

SO:0000354 | group_1_intron_homing_endonuclease_target_region

Description:

A region of intronic nucleotide sequence targeted by a nuclease enzyme.

•

SO Term

SO:0000986 | topology_attribute

Description:

The attribute of whether a nucleotide polymer is linear or circular.

•

SO Term

SO:0001688 | restriction_enzyme_cleavage_junction

Description:

The boundary at which a restriction enzyme breaks the nucleotide sequence.

•

SO Term

SO:0000696 | oligo

Description:

A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded.

•

SO Term

SO:0002062 | complex_chromosomal_rearrangement

Description:

A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis.

•

SO Term

SO:0000633 | monocistronic_mRNA

Description:

An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap.

•

SO Term

SO:0001467 | RST

Description:

A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long.

•

SO Term

SO:0001468 | three_prime_RST

Description:

A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long.

•

SO Term

SO:0001469 | five_prime_RST

Description:

A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long.

•

SO Term

SO:0000305 | modified_DNA_base

Description:

A modified nucleotide, i.e. a nucleotide other than A, T, C. G.

•

SO Term

SO:0000324 | tag

Description:

A nucleotide sequence that may be used to identify a larger sequence.

•

SO Term

SO:0000983 | strand_attribute

Description:

The attribute of how many strands are present in a nucleotide polymer.

•

SO Term

SO:0001176 | DHU_loop

Description:

Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues.

•

SO Term

SO:0001177 | T_loop

Description:

Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C.

•

SO Term

SO:0002026 | intein_encoding_region

Description:

The nucleotide sequence which encodes the intein portion of the precursor gene.

•

SO Term

SO:0001689 | five_prime_restriction_enzyme_junction

Description:

The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence.

•

SO Term

SO:0001690 | three_prime_restriction_enzyme_junction

Description:

The restriction enzyme cleavage junction on the 3' strand of the nucleotide sequence.

•

SO Term

SO:0000495 | three_prime_D_spacer

Description:

A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS.

•

SO Term

SO:0001174 | anticodon

Description:

A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA.

•

SO Term

SO:0000345 | EST

Description:

A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long.

•

SO Term

SO:0001683 | sequence_motif

Description:

A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance.

•

SO Term

SO:0000987 | linear

Description:

A quality of a nucleotide polymer that has a 3'-terminal residue and a 5'-terminal residue.

•

SO Term

SO:0001682 | replication_regulatory_region

Description:

A regulatory region that is involved in the control of the process of nucleotide replication.

•

SO Term

SO:0000235 | TF_binding_site

Description:

A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667].

•

SO Term

SO:0000533 | V_heptamer

Description:

7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene.

•

SO Term

SO:0000536 | V_nonamer

Description:

9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene.

•

SO Term

SO:0000985 | double

Description:

When a nucleotide polymer has two strands that are reverse-complement to one another and pair together.

•

SO Term

SO:1000023 | purine_to_pyrimidine_transversion

Description:

Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T.

•

SO Term

SO:0000331 | STS

Description:

Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known.

•

SO Term

SO:0002259 | polyA_site_cluster

Description:

A region defined by a cluster of experimentally determined polyadenylation sites, typically less than 25 bp in length and associated with a single polyadenylation signal.

•

SO Term

SO:0000514 | J_nonamer

Description:

9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene.

•

SO Term

SO:0000515 | J_heptamer

Description:

7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene.

•

SO Term

SO:0001800 | tasiRNA

Description:

The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene.

•

SO Term

SO:0000493 | three_prime_D_heptamer

Description:

7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene.

•

SO Term

SO:0000497 | five_prime_D_nonamer

Description:

9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene.

•

SO Term

SO:0001041 | viral_sequence

Description:

The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell.

•

SO Term

SO:0001383 | histone_binding_site

Description:

A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a histone.

•

SO Term

SO:0000059 | nuclease_binding_site

Description:

A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease.

•

SO Term

SO:0000061 | restriction_enzyme_binding_site

Description:

A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme.

•

SO Term

SO:0000562 | nonamer_of_recombination_feature_of_vertebrate_immune_system_gene

Description:

Nine nucleotide recombination site, part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene.

•

SO Term

SO:0000494 | three_prime_D_nonamer

Description:

A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene.

•

Your name:
Your email address:
Subject:
Message:	---- Current page: ---- /thalemine/keywordSearchResults.do;jsessionid=8B1D6BF4751AC2CB8A069BA523C09286?searchTerm=Single+Nucleotide+Polymorphism&searchBag=&facet_Category=SOTerm

ThaleMine

Search our database by keyword

Examples

Search results 1 to 100 out of 136 for Single Nucleotide Polymorphism

Category restricted to SOTerm

Categories