Type |
Details |
Score |
Publication |
First Author: |
Otowa T |
Title: |
Genome-wide association study of panic disorder in the Japanese population. |
Year: |
2009 |
Journal: |
J Hum Genet |
Volume: |
54 |
Pages: |
122-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Atwell S |
Title: |
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. |
Year: |
2010 |
Journal: |
Nature |
Volume: |
465 |
Pages: |
627-31 |
|
•
•
•
•
•
|
Publication |
First Author: |
Barber MJ |
Title: |
Genome-wide association of lipid-lowering response to statins in combined study populations. |
Year: |
2010 |
Journal: |
PLoS One |
Volume: |
5 |
Pages: |
e9763 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zuo L |
Title: |
Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q. |
Year: |
2012 |
Journal: |
Neuropsychopharmacology |
Volume: |
37 |
Pages: |
557-66 |
|
•
•
•
•
•
|
Publication |
First Author: |
Proietti S |
Title: |
Genome-wide association study reveals novel players in defense hormone crosstalk in Arabidopsis. |
Year: |
2018 |
Journal: |
Plant Cell Environ |
Volume: |
41 |
Pages: |
2342-2356 |
|
•
•
•
•
•
|
Publication |
First Author: |
Di Bernardo MC |
Title: |
A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia. |
Year: |
2008 |
Journal: |
Nat Genet |
Volume: |
40 |
Pages: |
1204-10 |
|
•
•
•
•
•
|
Publication |
First Author: |
Filiault DL |
Title: |
A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response. |
Year: |
2012 |
Journal: |
PLoS Genet |
Volume: |
8 |
Pages: |
e1002589 |
|
•
•
•
•
•
|
Publication |
First Author: |
Meijón M |
Title: |
Genome-wide association study using cellular traits identifies a new regulator of root development in Arabidopsis. |
Year: |
2014 |
Journal: |
Nat Genet |
Volume: |
46 |
Pages: |
77-81 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rhodes DH |
Title: |
Genome-wide association study of grain polyphenol concentrations in global sorghum [Sorghum bicolor (L.) Moench] germplasm. |
Year: |
2014 |
Journal: |
J Agric Food Chem |
Volume: |
62 |
Pages: |
10916-27 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
Genome-wide association study reveals WRKY42 as a novel plant transcription factor that influences oviposition preference of Pieris butterflies. |
Organism: |
A. thaliana |
Gene: |
WRKY42 |
PubMed Id: |
36560910 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
A genome-wide association study identifies novel players in Na and Fe homeostasis in Arabidopsis thaliana under alkaline-salinity stress. |
Organism: |
A. thaliana |
Gene: |
YUC8 |
PubMed Id: |
36433704 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
A genome-wide association study identifies novel players in Na and Fe homeostasis in Arabidopsis thaliana under alkaline-salinity stress. |
Organism: |
A. thaliana |
Gene: |
NINJA |
PubMed Id: |
36433704 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
A genome-wide association study identifies novel players in Na and Fe homeostasis in Arabidopsis thaliana under alkaline-salinity stress. |
Organism: |
A. thaliana |
Gene: |
ALA3 |
PubMed Id: |
36433704 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yuan J |
Title: |
A genome-wide association study reveals a novel regulator of ovule number and fertility in Arabidopsis thaliana. |
Year: |
2019 |
Journal: |
PLoS Genet |
Volume: |
15 |
Pages: |
e1007934 |
|
•
•
•
•
•
|
Gene |
Length: |
892
|
Chromosome Location: |
Chr2: 18846944-18847835 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
BON association protein 2;(source:Araport11) |
TAIR Curator Summary: |
encodes a protein that is similar to BONZAI1-binding protein BAP1. |
TAIR Short Description: |
BON association protein 2 |
TAIR Aliases: |
BAL, BAP2 |
|
•
•
•
•
•
|
Gene |
Length: |
1478
|
Chromosome Location: |
Chr3: 22650159-22651636 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
BON association protein 1;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. |
TAIR Short Description: |
BON association protein 1 |
TAIR Aliases: |
BAP1 |
|
•
•
•
•
•
|
Gene |
Length: |
5976
|
Chromosome Location: |
Chr4: 15479379-15485354 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
HSI2-like 1;(source:Araport11) |
TAIR Curator Summary: |
Transcriptional repressor involved in the recruitment of PRC2 for genome-wide polycomb silencing. |
TAIR Short Description: |
HSI2-like 1 |
TAIR Aliases: |
HSI2-L1, HSL1, VAL2 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
Expression genome-wide association study identifies that phosphatidylinositol-derived signalling regulates ALUMINIUM SENSITIVE3 expression under aluminium stress in the shoots of Arabidopsis thaliana. |
Organism: |
A. thaliana |
Gene: |
ALS3 |
PubMed Id: |
33288018 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li F |
Title: |
Genome-wide association study dissects the genetic architecture of seed weight and seed quality in rapeseed (Brassica napus L.). |
Year: |
2014 |
Journal: |
DNA Res |
Volume: |
21 |
Pages: |
355-67 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sadhukhan A |
Title: |
Genome-wide Association Study Reveals that the Aquaporin NIP1;1 Contributes to Variation in Hydrogen Peroxide Sensitivity in Arabidopsis thaliana. |
Year: |
2017 |
Journal: |
Mol Plant |
Volume: |
10 |
Pages: |
1082-1094 |
|
•
•
•
•
•
|
Publication |
First Author: |
Coolen S |
Title: |
Genome-wide association study reveals WRKY42 as a novel plant transcription factor that influences oviposition preference of Pieris butterflies. |
Year: |
2023 |
Journal: |
J Exp Bot |
Volume: |
74 |
Pages: |
1690-1704 |
|
•
•
•
•
•
|
Publication |
First Author: |
Almira Casellas MJ |
Title: |
A genome-wide association study identifies novel players in Na and Fe homeostasis in Arabidopsis thaliana under alkaline-salinity stress. |
Year: |
2023 |
Journal: |
Plant J |
Volume: |
113 |
Pages: |
225-245 |
|
•
•
•
•
•
|
Publication |
First Author: |
Anwer MA |
Title: |
Genome-wide association study uncovers a novel QTL allele of AtS40-3 that affects the sex ratio of cyst nematodes in Arabidopsis. |
Year: |
2018 |
Journal: |
J Exp Bot |
Volume: |
69 |
Pages: |
1805-1814 |
|
•
•
•
•
•
|
Publication |
First Author: |
Branham SE |
Title: |
Genome-Wide Association Study in Arabidopsis thaliana of Natural Variation in Seed Oil Melting Point: A Widespread Adaptive Trait in Plants. |
Year: |
2016 |
Journal: |
J Hered |
Volume: |
107 |
Pages: |
257-65 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Publication |
First Author: |
Sadhukhan A |
Title: |
Expression genome-wide association study identifies that phosphatidylinositol-derived signalling regulates ALUMINIUM SENSITIVE3 expression under aluminium stress in the shoots of Arabidopsis thaliana. |
Year: |
2021 |
Journal: |
Plant Sci |
Volume: |
302 |
Pages: |
110711 |
|
•
•
•
•
•
|
Publication |
First Author: |
Leslie EJ |
Title: |
A multi-ethnic genome-wide association study identifies novel loci for non-syndromic cleft lip with or without cleft palate on 2p24.2, 17q23 and 19q13. |
Year: |
2016 |
Journal: |
Hum Mol Genet |
Volume: |
25 |
Pages: |
2862-2872 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hong MG |
Title: |
Genome-wide and gene-based association implicates FRMD6 in Alzheimer disease. |
Year: |
2012 |
Journal: |
Hum Mutat |
Volume: |
33 |
Pages: |
521-9 |
|
•
•
•
•
•
|
Gene |
Length: |
3318
|
Chromosome Location: |
Chr3: 19188844-19192161 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
inflorescence meristem receptor-like kinase 2;(source:Araport11) |
TAIR Curator Summary: |
encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
inflorescence meristem receptor-like kinase 2 |
TAIR Aliases: |
IMK2 |
|
•
•
•
•
•
|
Publication |
First Author: |
Albert E |
Title: |
Genome-wide association identifies a missing hydrolase for tocopherol synthesis in plants. |
Year: |
2022 |
Journal: |
Proc Natl Acad Sci U S A |
Volume: |
119 |
Pages: |
e2113488119 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang K |
Title: |
Diverse genome-wide association studies associate the IL12/IL23 pathway with Crohn Disease. |
Year: |
2009 |
Journal: |
Am J Hum Genet |
Volume: |
84 |
Pages: |
399-405 |
|
•
•
•
•
•
|
Interaction Term |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
functional association |
Type: |
synonym |
|
•
•
•
•
•
|
Interaction Term |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
molecular association |
Type: |
synonym |
|
•
•
•
•
•
|
Publication |
First Author: |
Danik JS |
Title: |
Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study. |
Year: |
2009 |
Journal: |
Circ Cardiovasc Genet |
Volume: |
2 |
Pages: |
134-41 |
|
•
•
•
•
•
|
Publication |
First Author: |
Núñez JG |
Title: |
Study of AtSUS2 localization in seeds reveals a strong association with plastids. |
Year: |
2008 |
Journal: |
Plant Cell Physiol |
Volume: |
49 |
Pages: |
1621-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ohshige T |
Title: |
Association of new loci identified in European genome-wide association studies with susceptibility to type 2 diabetes in the Japanese. |
Year: |
2011 |
Journal: |
PLoS One |
Volume: |
6 |
Pages: |
e26911 |
|
•
•
•
•
•
|
Publication |
First Author: |
Xu Y |
Title: |
Association study of DGKH gene polymorphisms with calcium oxalate stone in Chinese population. |
Year: |
2014 |
Journal: |
Urolithiasis |
Volume: |
42 |
Pages: |
379-85 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chan EK |
Title: |
Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping. |
Year: |
2010 |
Journal: |
Genetics |
Volume: |
185 |
Pages: |
991-1007 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
matrix association region |
Type: |
synonym |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
nascent polypeptide association |
Type: |
synonym |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
protein self association |
Type: |
synonym |
|
•
•
•
•
•
|
Publication |
First Author: |
Milne RL |
Title: |
7q21-rs6964587 and breast cancer risk: an extended case-control study by the Breast Cancer Association Consortium. |
Year: |
2011 |
Journal: |
J Med Genet |
Volume: |
48 |
Pages: |
698-702 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kozlitina J |
Title: |
Exome-wide association study identifies a TM6SF2 variant that confers susceptibility to nonalcoholic fatty liver disease. |
Year: |
2014 |
Journal: |
Nat Genet |
Volume: |
46 |
Pages: |
352-6 |
|
•
•
•
•
•
|
Gene |
Length: |
1756
|
Chromosome Location: |
Chr2: 6642300-6644055 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
translocon at inner membrane of chloroplasts 21;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein located in the chloroplast inner envelope. The study of mutant defective in the gene product suggests that the protein is involved in the translocation of protein across the envelope membrane into the chloroplast stroma. |
TAIR Short Description: |
translocon at inner membrane of chloroplasts 21 |
TAIR Aliases: |
AtTic21, CIA5, PIC1, TIC21 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rajarammohan S |
Title: |
Genome-wide association mapping in Arabidopsis identifies novel genes underlying quantitative disease resistance to Alternaria brassicae. |
Year: |
2018 |
Journal: |
Mol Plant Pathol |
Volume: |
19 |
Pages: |
1719-1732 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ren D |
Title: |
A new regulator of seed size control in Arabidopsis identified by a genome-wide association study. |
Year: |
2019 |
Journal: |
New Phytol |
Volume: |
222 |
Pages: |
895-906 |
|
•
•
•
•
•
|
Author |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
Genome-wide chromatin association of NRPE1 is dependent on all members of a putative chromatin-remodeling complex termed DDR, which includes the proteins DRD1, DMS3 and RDM1. |
Organism: |
A. thaliana |
Gene: |
DRD1 |
PubMed Id: |
22864289 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
Genome-wide chromatin association of NRPE1 is dependent on all members of a putative chromatin-remodeling complex termed DDR, which includes the proteins DRD1, DMS3 and RDM1. |
Organism: |
A. thaliana |
Gene: |
NRPD1B |
PubMed Id: |
22864289 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
Genome-wide chromatin association of NRPE1 is dependent on all members of a putative chromatin-remodeling complex termed DDR, which includes the proteins DRD1, DMS3 and RDM1. |
Organism: |
A. thaliana |
Gene: |
RDM1 |
PubMed Id: |
22864289 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
Genome-wide chromatin association of NRPE1 is dependent on all members of a putative chromatin-remodeling complex termed DDR, which includes the proteins DRD1, DMS3 and RDM1. |
Organism: |
A. thaliana |
Gene: |
DMS3 |
PubMed Id: |
22864289 |
|
•
•
•
•
•
|
Gene |
Length: |
3378
|
Chromosome Location: |
Chr3: 3267825-3271202 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
NAC domain containing protein 52;(source:Araport11) |
TAIR Curator Summary: |
Encodes a NAC transcription factor that physically associates with the histone H3K4 demethylase JMJ14 and through that association is involved in transcriptional repression and flowering time control. |
TAIR Short Description: |
NAC domain containing protein 52 |
TAIR Aliases: |
ANAC051, ANAC052, NAC052, SGS1 |
|
•
•
•
•
•
|
Publication |
First Author: |
Su D |
Title: |
Mutation screening and association study of the TSSK4 Gene in Chinese infertile men with impaired spermatogenesis. |
Year: |
2008 |
Journal: |
J Androl |
Volume: |
29 |
Pages: |
374-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chao DY |
Title: |
Genome-wide association mapping identifies a new arsenate reductase enzyme critical for limiting arsenic accumulation in plants. |
Year: |
2014 |
Journal: |
PLoS Biol |
Volume: |
12 |
Pages: |
e1002009 |
|
•
•
•
•
•
|
Publication |
First Author: |
Broekgaarden C |
Title: |
Novel Genes Affecting the Interaction between the Cabbage Whitefly and Arabidopsis Uncovered by Genome-Wide Association Mapping. |
Year: |
2015 |
Journal: |
PLoS One |
Volume: |
10 |
Pages: |
e0145124 |
|
•
•
•
•
•
|
Publication |
First Author: |
Heim MA |
Title: |
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. |
Year: |
2003 |
Journal: |
Mol Biol Evol |
Volume: |
20 |
Pages: |
735-47 |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
nuclear matrix association region |
Type: |
synonym |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
cohesin association with chromatin |
Type: |
synonym |
|
•
•
•
•
•
|
Gene |
Length: |
2956
|
Chromosome Location: |
Chr4: 16102595-16105550 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
histone deacetylase 14;(source:Araport11) |
TAIR Curator Summary: |
Encodes HDA14, a member of the histone deacetylase family proteins that can deacetylate a-tubulin, associates with a/b-tubulin and is retained on GTP/taxol-stabilized microtubules, at least in part, by direct association with the PP2A-A2 subunit. The association of a histone deacetylase with PP2A suggests a direct link between protein phosphorylation and acetylation. Class II RPD3-like family HDAC member which controls negative responses to salinity stress. |
TAIR Short Description: |
histone deacetylase 14 |
TAIR Aliases: |
ATHDA14, AtHDAC14, HDA14, HDAC14 |
|
•
•
•
•
•
|
Publication |
First Author: |
Marino C |
Title: |
A family-based association study does not support DYX1C1 on 15q21.3 as a candidate gene in developmental dyslexia. |
Year: |
2005 |
Journal: |
Eur J Hum Genet |
Volume: |
13 |
Pages: |
491-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li Y |
Title: |
Genome-Wide Association and Functional Studies Identify SCML4 and THSD7A as Novel Susceptibility Genes for Coronary Artery Disease. |
Year: |
2018 |
Journal: |
Arterioscler Thromb Vasc Biol |
Volume: |
38 |
Pages: |
964-975 |
|
•
•
•
•
•
|
Gene |
Length: |
2493
|
Chromosome Location: |
Chr5: 2600443-2602935 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
movement protein binding protein 2C;(source:Araport11) |
TAIR Curator Summary: |
Microtubule-associated and viral movement protein binding protein. Negatively regulates KN1 association to plasmodesmata and, consequently, cell-to-cell transport. Involved in the alignment of cortical microtubules, the patterning of stomata and in restricting tobamoviral infections. |
TAIR Short Description: |
movement protein binding protein 2C |
TAIR Aliases: |
MPB2C |
|
•
•
•
•
•
|
Gene |
Length: |
3247
|
Chromosome Location: |
Chr3: 4672916-4676162 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11) |
TAIR Curator Summary: |
Triple RNA Recognition Motif protein involved in the dynamic and reversible aggregation of translationally repressed mRNAs during hypoxia.During hypoxia, UBP1C association with non? uracil-rich mRNAs is enhanced concomitant with its aggregation into microscopically visible cytoplasmic foci, referred to as UBP1 stress granules (SGs). This mRNA association occurs as global levels of protein synthesis decline during hypoxia. Upon reoxygenation, rapid UBP1 SG disaggregation coincides with the return of the stabilized mRNAs to polysomes. |
TAIR Short Description: |
RNA-binding (RRM/RBD/RNP motifs) family protein |
TAIR Aliases: |
UBP1C |
|
•
•
•
•
•
|
Gene |
Length: |
2884
|
Chromosome Location: |
Chr2: 11063301-11066184 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
alpha-vacuolar processing enzyme;(source:Araport11) |
TAIR Curator Summary: |
Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. |
TAIR Short Description: |
alpha-vacuolar processing enzyme |
TAIR Aliases: |
AEP1, ALPHA-VPE, ALPHAVPE |
|
•
•
•
•
•
|
Gene |
Length: |
5242
|
Chromosome Location: |
Chr5: 1444638-1449879 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
aminophospholipid ATPase 1;(source:Araport11) |
TAIR Curator Summary: |
Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response. It is targeted to the plasma membrane following association in the endoplasmic reticulum with an ALIS protein beta-subunit. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
aminophospholipid ATPase 1 |
TAIR Aliases: |
ALA1 |
|
•
•
•
•
•
|
Gene |
Length: |
5213
|
Chromosome Location: |
Chr5: 26380123-26385335 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
trafficking protein particle complex subunit-like protein;(source:Araport11) |
TAIR Curator Summary: |
TRAPPIII complex protein which regulates TGN integrity, by altered TGN/EE association of several residents, including SYNTAXIN OF PLANTS 61 (SYP61), and altered vesicle morphology. Involved in regulation of endosomal function and salt stress response. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
ROG2, TRAPPC11 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
GO Term |
Description: |
A form of mutualism between a fungus and the roots of a vascular plant, where hyphae of the fungus penetrate the plant cell wall and invaginate its cell membrane. Once inside, the fungus forms highly branched structures for nutrient exchange with the plant called arbuscules. Aids in the acquisition by the plant of nutrients such as phosphorus from the soil. |
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Publication |
First Author: |
Verslues PE |
Title: |
Genome-wide association mapping combined with reverse genetics identifies new effectors of low water potential-induced proline accumulation in Arabidopsis. |
Year: |
2014 |
Journal: |
Plant Physiol |
Volume: |
164 |
Pages: |
144-59 |
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Publication |
First Author: |
Chen C |
Title: |
PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants. |
Year: |
2012 |
Journal: |
PLoS One |
Volume: |
7 |
Pages: |
e46596 |
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Gene |
Length: |
3502
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Chromosome Location: |
Chr3: 3264194-3267695 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
NAC domain containing protein 50;(source:Araport11) |
TAIR Curator Summary: |
Encodes a NAC transcription factor that physically associates with the histone H3K4 demethylase JMJ14 and through that association is involved in transcriptional repression and flowering time control. It binds the NAC-binding site, the Mitochondrial Dysfunction Motif. |
TAIR Short Description: |
NAC domain containing protein 50 |
TAIR Aliases: |
ANAC050, NAC050, NAC50 |
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Gene |
Length: |
8912
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Chromosome Location: |
Chr3: 19332828-19341739 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
tetratricopeptide repeat (TPR)-containing protein;(source:Araport11) |
TAIR Curator Summary: |
Involved in regulating mitochondrial quality control. Regulates mitochondrial association time and thereby is involved in mitochondrial fusion. Mutants show unregulated autophagy and display transcriptomic markers of mitochondrial stress. Its activity can be modulated by Lys acetylation. |
TAIR Short Description: |
tetratricopeptide repeat (TPR)-containing protein |
TAIR Aliases: |
FMT, FRIENDLY, NOXY38 |
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Author |
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GeneRIF (Gene Reference into Function) |
Annotation: |
Using genome-wide association studies, the authors first identified allelic variation of the Lyso-PhosphatidylCholine (PC) AcylTransferase 1 (LPCAT1) gene as the key determinant of shoot inorganic phosphate accumulation under zinc deficiency. |
Organism: |
A. thaliana |
Gene: |
LPLAT1 |
PubMed Id: |
29453864 |
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Gene |
Length: |
3132
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Chromosome Location: |
Chr1: 9500892-9504023 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
squamosa promoter-like 11;(source:Araport11) |
TAIR Curator Summary: |
In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL2, SPL10, and SPL11, suppress root regeneration with age by inhibiting wound-induced auxin biosynthesis. |
TAIR Short Description: |
squamosa promoter-like 11 |
TAIR Aliases: |
SPL11 |
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Gene |
Length: |
4143
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Chromosome Location: |
Chr5: 9243398-9247540 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Major facilitator superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD. |
TAIR Short Description: |
Major facilitator superfamily protein |
TAIR Aliases: |
ATSTP13, MSS1, STP13 |
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Gene |
Length: |
1651
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Chromosome Location: |
Chr3: 822896-824546 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11) |
TAIR Curator Summary: |
One of two paralogous GLTSCR domain containing proteins and a core component of SWI/SNF complexes. Interacts with BRM and may be responsible for ensuring proper complex assembly and association with chromatin. Function is dependent upon the GLTSCR domain. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
BRIP1 |
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Gene |
Length: |
4461
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Chromosome Location: |
Chr4: 15248377-15252837 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
flocculation protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a plant-specific protein that physically interacts with CRWN1 and its homolog CRWN4 and localizes at the inner nuclear membrane. KAKU4 deforms the nuclear envelope in a dose-dependent manner, in association with nuclear membrane invagination and stack formation. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
KAKU4 |
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Publication |
First Author: |
Hou S |
Title: |
Replication study confirms the association between UBAC2 and Behçet's disease in two independent Chinese sets of patients and controls. |
Year: |
2012 |
Journal: |
Arthritis Res Ther |
Volume: |
14 |
Pages: |
R70 |
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Ontology Term Synonym |
Name: |
regulation of nascent polypeptide association |
Type: |
synonym |
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Publication |
First Author: |
Hollis-Moffatt JE |
Title: |
Only one independent genetic association with rheumatoid arthritis within the KIAA1109-TENR-IL2-IL21 locus in Caucasian sample sets: confirmation of association of rs6822844 with rheumatoid arthritis at a genome-wide level of significance. |
Year: |
2010 |
Journal: |
Arthritis Res Ther |
Volume: |
12 |
Pages: |
R116 |
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Publication |
First Author: |
Hao GP |
Title: |
Nucleotide variation in the NCED3 region of Arabidopsis thaliana and its association study with abscisic acid content under drought stress. |
Year: |
2009 |
Journal: |
J Integr Plant Biol |
Volume: |
51 |
Pages: |
175-83 |
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Publication |
First Author: |
Bigdeli TB |
Title: |
Comprehensive gene-based association study of a chromosome 20 linked region implicates novel risk loci for depressive symptoms in psychotic illness. |
Year: |
2011 |
Journal: |
PLoS One |
Volume: |
6 |
Pages: |
e21440 |
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Publication |
First Author: |
Chao DY |
Title: |
Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana. |
Year: |
2012 |
Journal: |
PLoS Genet |
Volume: |
8 |
Pages: |
e1002923 |
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Publication |
First Author: |
Renard J |
Title: |
Identification of novel seed longevity genes related to oxidative stress and seed coat by genome-wide association studies and reverse genetics. |
Year: |
2020 |
Journal: |
Plant Cell Environ |
Volume: |
43 |
Pages: |
2523-2539 |
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Gene |
Length: |
3286
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Chromosome Location: |
Chr5: 3633649-3636934 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
WPP domain-interacting protein 1;(source:Araport11) |
TAIR Curator Summary: |
Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells. |
TAIR Short Description: |
WPP domain-interacting protein 1 |
TAIR Aliases: |
WIT1 |
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Gene |
Length: |
3232
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Chromosome Location: |
Chr1: 25908046-25911277 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
WPP domain-interacting protein 2;(source:Araport11) |
TAIR Curator Summary: |
Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells. |
TAIR Short Description: |
WPP domain-interacting protein 2 |
TAIR Aliases: |
WIT2 |
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Gene |
Length: |
3431
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Chromosome Location: |
Chr1: 9505112-9508542 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
squamosa promoter binding protein-like 10;(source:Araport11) |
TAIR Curator Summary: |
In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL2, SPL10, and SPL11, suppress root regeneration with age by inhibiting wound-induced auxin biosynthesis. SPL10 also controls lamina shape during vegetative development. |
TAIR Short Description: |
squamosa promoter binding protein-like 10 |
TAIR Aliases: |
SPL10 |
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Publication |
First Author: |
Guan F |
Title: |
Two-stage association study to identify the genetic susceptibility of a novel common variant of rs2075290 in ZPR1 to type 2 diabetes. |
Year: |
2016 |
Journal: |
Sci Rep |
Volume: |
6 |
Pages: |
29586 |
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Publication |
First Author: |
Sakai K |
Title: |
Replication study for the association of 9 East Asian GWAS-derived loci with susceptibility to type 2 diabetes in a Japanese population. |
Year: |
2013 |
Journal: |
PLoS One |
Volume: |
8 |
Pages: |
e76317 |
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Gene |
Length: |
1084
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Chromosome Location: |
Chr4: 8418242-8419325 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Chlorophyll A-B binding family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. |
TAIR Short Description: |
Chlorophyll A-B binding family protein |
TAIR Aliases: |
ELIP2 |
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Gene |
Length: |
3923
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Chromosome Location: |
Chr3: 3331064-3334986 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
calmodulin-domain protein kinase cdpk isoform 2;(source:Araport11) |
TAIR Curator Summary: |
predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%. |
TAIR Short Description: |
calmodulin-domain protein kinase cdpk isoform 2 |
TAIR Aliases: |
ATCPK2, CPK2 |
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Ontology Term Synonym |
Name: |
regulation of cohesin association with chromatin |
Type: |
synonym |
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Gene |
Length: |
2803
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Chromosome Location: |
Chr3: 21196517-21199319 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
eukaryotic translation initiation factor 3E;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation. |
TAIR Short Description: |
eukaryotic translation initiation factor 3E |
TAIR Aliases: |
ATEIF3E-1, ATINT6, EIF3E, INT-6, INT6, TIF3E1 |
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Publication |
First Author: |
Brachi B |
Title: |
Genome-wide association mapping of flowering time in Arabidopsis thaliana in nature: genetics for underlying components and reaction norms across two successive years. |
Year: |
2013 |
Journal: |
Acta Bot Gall |
Volume: |
160 |
Pages: |
205-219 |
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Protein Domain |
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