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Search results 201 to 233 out of 233 for Single Nucleotide Polymorphism

Category restricted to Generif (x)

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0.033s

Categories

Category: Generif
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Type Details Score
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Single and double knockout deletions of eIFis4G1 (i4g1) and eIFiso4G2 (i4g2) genes in A. thaliana reduce the amounts of chlorophyll a and b, suggesting a role in the expression of chloroplast proteins. [i4g1] [eIFiso4G1]
Organism: A. thaliana
Gene: eIFiso4G1
PubMed Id: 20694742
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A detailed examination of two mutants, jason and ps1, has been reported, in which disturbed spindle position during male meiosis II results in the incorporation of previously separated chromosome groups into a single cell.
Organism: A. thaliana
Gene: JASON
PubMed Id: 25757555
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A detailed examination of two mutants, jason and ps1, has been reported, in which disturbed spindle position during male meiosis II results in the incorporation of previously separated chromosome groups into a single cell.
Organism: A. thaliana
Gene: PS1
PubMed Id: 25757555
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A single cell model of the LAX3 and IAA14 auxin response was formulated and used to demonstrate that hysteresis and bistability may explain the experimentally observed 'all-or-nothing' LAX3 spatial expression pattern in cortical cells.
Organism: A. thaliana
Gene: LAX3
PubMed Id: 25446711
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Within the red absorbing antenna chlorophylls (chls) of a single chl-protein complex in photosystem II antenna complex CP29, a marked spectral band shape heterogeneity exists, wherein no evidence of significantly strong excitonic interactions is found.
Organism: A. thaliana
Gene: CP29
PubMed Id: 20047285
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: MUG13.4 and AtAGO2 were both predominantly expressed in seeds and roots. Phenotypic analyses of the single and double mutants under salt stress confirmed involvement of MUG13.4-AtAGO2 complex as a component of the salt tolerance mechanism.
Organism: A. thaliana
Gene: AT5G05100
PubMed Id: 31521214
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: MUG13.4 and AtAGO2 were both predominantly expressed in seeds and roots. Phenotypic analyses of the single and double mutants under salt stress confirmed involvement of MUG13.4-AtAGO2 complex as a component of the salt tolerance mechanism.
Organism: A. thaliana
Gene: AGO2
PubMed Id: 31521214
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Observed full-length VIM1 binds preferentially to hemi-methylated DNA with a single modified 5mCpG site. However, when 5hmC replaces one or both cytosine residues at a palindromic CpG site, VIM1 binds with approximately >/=10-fold lower affinity.
Organism: A. thaliana
Gene: VIM1
PubMed Id: 22459921
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The expression of AtSERK1::GUS coincides with embryogenic development up to the heart-shaped stage. Prior to the expression in embryos, AtSERK1 was expressed in single cells and small cell clusters, indicating that AtSERK1 marks embryogenic competence.
Organism: A. thaliana
Gene: SERK1
PubMed Id: 18515128
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Both types of Rab5 members, ARA7 and RHA1 in Arabidopsis, are activated by a single Rab5 GEF, VPS9a. The activity of VPS9a is essential for various plant functions, such as cytokinesis, embryogenesis, and organ development. [VPS9a]
Organism: A. thaliana
Gene: VPS9A
PubMed Id: 18055610
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The genomic location of the EVE1 gene in Arabidopsis thaliana corresponded to a bacterial artificial chromosome (BAC) F4C21 from chromosome IV at ~17cM which encoded a novel ubiquitin family protein (At4g03350), consisting of a single exon.
Organism: A. thaliana
Gene: DWF1
PubMed Id: 21624980
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Based on a model of the PDX1/PDX2 complex, mutation of a single residue uncouples enzyme coordination and in turn provides tangible evidence for the existence of the recently proposed ammonia tunnel through the core of PDX1.
Organism: A. thaliana
Gene: PDX2
PubMed Id: 17468224
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: 3 single base pair mutations disrupted NON-YELLOW COLORING1 function, one by producing a termination codon, the second by interfering with correct intron splicing and the third by replacing a highly conserved proline with a non-equivalent serine residue.
Organism: A. thaliana
Gene: NYC1
PubMed Id: 26261268
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data show that the expression level of 5PTase13 was significantly enhanced in phot1 single or phot1 phot2 double mutants under blue light, and suppression of 5PTase13 expression rescued the elongated hypocotyls in the phot1 or phot1 phot2 mutants.
Organism: A. thaliana
Gene: PHOT2
PubMed Id: 18252844
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: FtsZ1 and FtsZ2 can heteropolymerize into a contractible ring ex vivo. Fluorescently labelled FtsZ1 and/or FtsZ2 formed single rings in cells of the yeast Pichia pastoris. Photobleaching experiments indicated that co-assembly of FtsZ1 and FtsZ2 imparts polarity to polymerization.
Organism: A. thaliana
Gene: FTSZ2-1
PubMed Id: 27322658
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: results support the notion that ARC5 is dispensable in the process of equal division of epidermal plastids, and indicate that dysfunctions in ARC5 and ARC6 differentially affect plastid replication among mesophyll cells, PCs, and GCs within a single leaf
Organism: A. thaliana
Gene: ARC5
PubMed Id: 29466386
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: By over-expression of CBF-related genes combining together with suppression of ESK1 gene, the significant increase of plant drought tolerance has been achieved in comparison to single gene manipulation, although the effect is not in an additive way. [ESKMO1] [ESK1]
Organism: A. thaliana
Gene: ESK1
PubMed Id: 25184213
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Interaction between CBL4 and CBL10 and found that the cbl4 cbl10 double mutant was dramatically more sensitive to salt as compared to the cbl4 and cbl10 single mutants, suggesting that CBL4 and CBL10 each directs a different salt-tolerance pathway.
Organism: A. thaliana
Gene: CBL10
PubMed Id: 31100786
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Interaction between CBL4 and CBL10 and found that the cbl4 cbl10 double mutant was dramatically more sensitive to salt as compared to the cbl4 and cbl10 single mutants, suggesting that CBL4 and CBL10 each directs a different salt-tolerance pathway.
Organism: A. thaliana
Gene: SOS3
PubMed Id: 31100786
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: results support the notion that ARC5 is dispensable in the process of equal division of epidermal plastids, and indicate that dysfunctions in ARC5 and ARC6 differentially affect plastid replication among mesophyll cells, PCs, and GCs within a single leaf
Organism: A. thaliana
Gene: ARC6
PubMed Id: 29466386
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: FtsZ1 and FtsZ2 can heteropolymerize into a contractible ring ex vivo. Fluorescently labelled FtsZ1 and/or FtsZ2 formed single rings in cells of the yeast Pichia pastoris. Photobleaching experiments indicated that co-assembly of FtsZ1 and FtsZ2 imparts polarity to polymerization.
Organism: A. thaliana
Gene: FTSZ1-1
PubMed Id: 27322658
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis ICP55 was responsible for the removal of single amino acids, and its action explained the -3 arginine processing motif of a number of mitochondrial proteins. It modifies enzyme amino termini and alters protein stability in Arabidopsis mitochondria. [ICP55]
Organism: A. thaliana
Gene: AT1G09300
PubMed Id: 25862457
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Here, the authors show that genetic inactivation of a single DDM1/Lsh family nucleosome remodeler biases methylation toward inter-nucleosomal linker DNA in Arabidopsis thaliana and mouse. The results indicate that in the absence of remodeling, nucleosomes are strong barriers to DNA methyltransferases.
Organism: A. thaliana
Gene: CHR1
PubMed Id: 29140247
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data show that the antiviral activity of both aminophospholipid ATPase 1/2 (ALA1 and ALA2) was abolished by a single amino acid substitution known to inactivate the flippase activity, and the ala1/ala2 single- and double-mutant plants exhibited enhanced disease susceptibility to cucumber mosaic virus.
Organism: A. thaliana
Gene: ALA1
PubMed Id: 28123063
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data show that the antiviral activity of both aminophospholipid ATPase 1/2 (ALA1 and ALA2) was abolished by a single amino acid substitution known to inactivate the flippase activity, and the ala1/ala2 single- and double-mutant plants exhibited enhanced disease susceptibility to cucumber mosaic virus.
Organism: A. thaliana
Gene: ALA2
PubMed Id: 28123063
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis AGC1.5 subfamily of cytoplasmic kinases is critical for the restricted localization of ROP-GTP during pollen tube growth. Loss of AGC1.5 function results in the mistargeting of active ROPs and defective events downstream of ROP signaling in pollen tubes. AGC1.5 interacts with and phosphorylates Guanine nucleotide exchange factors for ROPs via their catalytic PRONE domain.
Organism: A. thaliana
Gene: AGC1.5
PubMed Id: 30055264
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Single cp12-1, cp12-2, and cp12-3 mutants do not develop a severe photosynthetic or growth phenotype. In contrast, reductions of both CP12-1 and CP12-2 transcripts lead to reductions in photosynthetic capacity and to slower growth and reduced seed yield. No clear phenotype for CP12-3 was evident.
Organism: A. thaliana
Gene: CP12-1
PubMed Id: 28430985
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Single cp12-1, cp12-2, and cp12-3 mutants do not develop a severe photosynthetic or growth phenotype. In contrast, reductions of both CP12-1 and CP12-2 transcripts lead to reductions in photosynthetic capacity and to slower growth and reduced seed yield. No clear phenotype for CP12-3 was evident.
Organism: A. thaliana
Gene: CP12-2
PubMed Id: 28430985
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Single cp12-1, cp12-2, and cp12-3 mutants do not develop a severe photosynthetic or growth phenotype. In contrast, reductions of both CP12-1 and CP12-2 transcripts lead to reductions in photosynthetic capacity and to slower growth and reduced seed yield. No clear phenotype for CP12-3 was evident.
Organism: A. thaliana
Gene: CP12-3
PubMed Id: 28430985
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis pollen receptor like kinase 6 (AtPRK6) is localized to the plasma membrane and expressed specifically in pollen tubes. The interactions between AtPRK6 and Arabidopsis Rop guanine nucleotide exchange factors AtRopGEF8 and AtRopGEF12 are mediated by the C-termini of AtRopGEF8/12 and by the juxtamembrane and kinase domain of AtPRK6, but are not dependent on the kinase activity.
Organism: A. thaliana
Gene: PRK6
PubMed Id: 28795376
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Detailed phenotypic analyses of bak1-SUP1 and a single mutant in which the bak1 mutation was segregated out (miR172-D) revealed that the overexpression of miR172 promotes leaf length elongation in adult plants and increases the root and hypocotyl growth during the seedling stage compared with that of wild type plants.
Organism: A. thaliana
Gene: BAK1
PubMed Id: 24732353
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Using poly(A) tag sequencing, it was found that >50% of alternative polyadenylation (APA) events are altered in fy single mutants or double mutants with oxt6 (a null mutant of AtCPSF30), but mutation of the FY WD40-repeat has a stronger effect than deletion of the plant-unique Pro-Pro-Leu-Pro-Pro (PPLPP) domain.
Organism: A. thaliana
Gene: FY
PubMed Id: 31427469
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study identified a single Arabidopsis thaliana gene, At3g57630, in clade E of the inverting Glycosyltransferase family GT47 as a candidate for the transfer of Araf to Hyp-arabinofuranotriose (Hyp-beta1,4Araf-beta1,2Araf-beta1,2Araf) side chains in an alpha-linkage, to yield Hyp-Araf4 which is exclusively found in extensins. Knock-out mutants of At3g57630 showed a truncated root hair phenotype.
Organism: A. thaliana
Gene: AT3G57630
PubMed Id: 28358137
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