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Gene : RGLG3 A. thaliana

DB identifier  ? AT5G63970 Secondary Identifier  ? locus:2160821
Name  ? RING DOMAIN LIGASE 3 Brief Description  Copine (Calcium-dependent phospholipid-binding protein) family
TAIR Computational Description  Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11)
TAIR Curator Summary  Encodes a ubiquitin ligase that is an essential upstream modulator of JA signaling in response to various stimuli.
TAIR Short Description  Copine (Calcium-dependent phospholipid-binding protein) family
TAIR Aliases  RGLG3

3 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2536  
Location: Chr5:25606771-25609306 reverse strand

Gene models - RGLG3 AT5G63970

? Gene models

Transcripts: 2  Exons: 21  Introns: 19 

Overlapping Features

? Genome features that overlap coordinates of this Gene

14 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RGLG3_ARATH function Possesses E3 ubiquitin-protein ligase in vitro. Acts as upstream modulator of jasmonate (JA) signaling in response to various stimuli, such as JA-inhibited root growth, JA-inductive gene expression, coronatine-mediated pathogen susceptibility, wound-stimulated expression of JA-responsive genes and wound-induced JA biosynthesis (PubMed:22898498). Controls fumonisin B1 (FB1)-triggered programmed cell death (PCD) by modulating the JA signaling pathway. May mediate salicylic acid (SA) suppression of JA signaling in FB1-induced responses (PubMed:25788731). May mediate the formation of 'Lys-48'-linked multiubiquitin chains. Mediates the polyubiquitination and subsequent proteasomal degradation of the target protein GRXS17 (PubMed:27497447).
RGLG3_ARATH tissue specificity Widely expressed.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
ubiquitin-protein transferase activity  ? ECO  
metal ion binding  ? ECO  
biological process
response to wounding  ? ECO  
defense response to bacterium  ? ECO  
jasmonic acid mediated signaling pathway  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets