External Links
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63220:CDS:14 | 12 | Chr5: 25353256-25353267 | Arabidopsis thaliana |
AT5G63220:CDS:12 | 81 | Chr5: 25353340-25353420 | Arabidopsis thaliana |
AT5G63220:CDS:11 | 85 | Chr5: 25353567-25353651 | Arabidopsis thaliana |
AT5G63220:CDS:10 | 129 | Chr5: 25353737-25353865 | Arabidopsis thaliana |
AT5G63220:CDS:9 | 47 | Chr5: 25353952-25353998 | Arabidopsis thaliana |
AT5G63220:CDS:8 | 84 | Chr5: 25354166-25354249 | Arabidopsis thaliana |
AT5G63220:CDS:7 | 91 | Chr5: 25354326-25354416 | Arabidopsis thaliana |
AT5G63220:CDS:6 | 160 | Chr5: 25354526-25354685 | Arabidopsis thaliana |
AT5G63220:CDS:5 | 82 | Chr5: 25354757-25354838 | Arabidopsis thaliana |
AT5G63220:CDS:4 | 79 | Chr5: 25354927-25355005 | Arabidopsis thaliana |
AT5G63220:CDS:2 | 80 | Chr5: 25355182-25355261 | Arabidopsis thaliana |
AT5G63220:CDS:1 | 45 | Chr5: 25355366-25355410 | Arabidopsis thaliana |
AT5G63220:CDS:14.1 | 12 | Chr5: 25353256-25353267 | Arabidopsis thaliana |
AT5G63220:CDS:12.1 | 81 | Chr5: 25353340-25353420 | Arabidopsis thaliana |
AT5G63220:CDS:11.1 | 85 | Chr5: 25353567-25353651 | Arabidopsis thaliana |
AT5G63220:CDS:10.1 | 129 | Chr5: 25353737-25353865 | Arabidopsis thaliana |
AT5G63220:CDS:9.1 | 47 | Chr5: 25353952-25353998 | Arabidopsis thaliana |
AT5G63220:CDS:8.1 | 84 | Chr5: 25354166-25354249 | Arabidopsis thaliana |
AT5G63220:CDS:7.1 | 91 | Chr5: 25354326-25354416 | Arabidopsis thaliana |
AT5G63220:CDS:6.1 | 160 | Chr5: 25354526-25354685 | Arabidopsis thaliana |
AT5G63220:CDS:5.1 | 82 | Chr5: 25354757-25354838 | Arabidopsis thaliana |
AT5G63220:CDS:4.1 | 79 | Chr5: 25354927-25355005 | Arabidopsis thaliana |
AT5G63220:CDS:3 | 23 | Chr5: 25355182-25355204 | Arabidopsis thaliana |
AT5G63220:CDS:13 | 90 | Chr5: 25353331-25353420 | Arabidopsis thaliana |
AT5G63220:CDS:11.2 | 85 | Chr5: 25353567-25353651 | Arabidopsis thaliana |
AT5G63220:CDS:10.2 | 129 | Chr5: 25353737-25353865 | Arabidopsis thaliana |
AT5G63220:CDS:9.2 | 47 | Chr5: 25353952-25353998 | Arabidopsis thaliana |
AT5G63220:CDS:8.2 | 84 | Chr5: 25354166-25354249 | Arabidopsis thaliana |
AT5G63220:CDS:7.2 | 91 | Chr5: 25354326-25354416 | Arabidopsis thaliana |
AT5G63220:CDS:6.2 | 160 | Chr5: 25354526-25354685 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63200:exon:14 | 520 | Chr5: 25352520-25353039 | Arabidopsis thaliana |
AT5G63220:exon:16 | 250 | Chr5: 25353018-25353267 | Arabidopsis thaliana |
AT5G63220:exon:1 | 170 | Chr5: 25355366-25355535 | Arabidopsis thaliana |
AT5G63220:exon:15 | 234 | Chr5: 25353034-25353267 | Arabidopsis thaliana |
AT5G63220:exon:13 | 81 | Chr5: 25353340-25353420 | Arabidopsis thaliana |
AT5G63220:exon:3 | 159 | Chr5: 25355182-25355340 | Arabidopsis thaliana |
AT5G63220:exon:14 | 387 | Chr5: 25353034-25353420 | Arabidopsis thaliana |
AT5G63220:exon:12 | 85 | Chr5: 25353567-25353651 | Arabidopsis thaliana |
AT5G63220:exon:11 | 129 | Chr5: 25353737-25353865 | Arabidopsis thaliana |
AT5G63220:exon:10 | 47 | Chr5: 25353952-25353998 | Arabidopsis thaliana |
AT5G63220:exon:9 | 84 | Chr5: 25354166-25354249 | Arabidopsis thaliana |
AT5G63220:exon:8 | 91 | Chr5: 25354326-25354416 | Arabidopsis thaliana |
AT5G63220:exon:7 | 160 | Chr5: 25354526-25354685 | Arabidopsis thaliana |
AT5G63220:exon:6 | 82 | Chr5: 25354757-25354838 | Arabidopsis thaliana |
AT5G63220:exon:5 | 79 | Chr5: 25354927-25355005 | Arabidopsis thaliana |
AT5G63220:exon:4 | 80 | Chr5: 25355182-25355261 | Arabidopsis thaliana |
AT5G63220:exon:2 | 135 | Chr5: 25355366-25355500 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63220:five_prime_UTR:1 | 125 | Chr5: 25355411-25355535 | Arabidopsis thaliana |
AT5G63220:five_prime_UTR:3 | 136 | Chr5: 25355205-25355340 | Arabidopsis thaliana |
AT5G63220:five_prime_UTR:2 | 90 | Chr5: 25355411-25355500 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G63200 | locus:2162027 | AT5G63200 | 4137 | Chr5: 25348903-25353039 | A. thaliana | tetratricopeptide repeat (TPR)-containing protein;(source:Araport11) | NULL | tetratricopeptide repeat (TPR)-containing protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G63200.1 | 2230 | Chr5: 25348903-25353039 |
AT5G63200.2 | 2136 | Chr5: 25348949-25353039 |
AT5G63220.1 | 1338 | Chr5: 25353018-25355535 |
AT5G63220.3 | 1231 | Chr5: 25353034-25355340 |
AT5G63220.2 | 1359 | Chr5: 25353034-25355500 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63200:three_prime_UTR:1 | 140 | Chr5: 25352900-25353039 | Arabidopsis thaliana |
AT5G63220:three_prime_UTR:3 | 238 | Chr5: 25353018-25353255 | Arabidopsis thaliana |
AT5G63220:three_prime_UTR:2 | 222 | Chr5: 25353034-25353255 | Arabidopsis thaliana |
AT5G63220:three_prime_UTR:1 | 297 | Chr5: 25353034-25353330 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
GET4_ARATH | function | Involved in the regulation of root hair growth. |
A0A1P8BH52_ARATH A0A1P8BH44_ARATH GET4_ARATH | similarity | Belongs to the GET4 family. |
Function
Gene Ontology
cellular component | |
---|---|
cytosol | ECO |
molecular function | |
No terms in this category. | |
biological process | |
root hair elongation | ECO |
protein insertion into ER membrane | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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