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Gene : VIP4 A. thaliana

DB identifier  ? AT5G61150 Secondary Identifier  ? locus:2159466
Name  ? VERNALIZATION INDEPENDENCE 4 Brief Description  leo1-like family protein
TAIR Computational Description  leo1-like family protein;(source:Araport11)
TAIR Curator Summary  Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold. Member of PAF-C complex.
TAIR Short Description  leo1-like family protein
TAIR Aliases  VIP4

0 Gene Rifs

1 Organism

20 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4092  
Location: Chr5:24603634-24607725 reverse strand

Gene models - VIP4 AT5G61150

? Gene models

Transcripts: 2  Exons: 22  Introns: 20 

Overlapping Features

? Genome features that overlap coordinates of this Gene

15 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
VIP4_ARATH function Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 'Lys-4' (H3K4me3) (PubMed:20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressor and MADS box gene FLC (PubMed:12207655). Involved in the control of seed dormancy and germination (PubMed:21799800).
VIP4_ARATH similarity Belongs to the LEO1 family.
VIP4_ARATH tissue specificity Expressed in roots, shoot apices, stems, cauline leaves, inflorescence apices and flowers.

2 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
Cdc73/Paf1 complex  ? ECO  
molecular function
No terms in this category.
biological process
transcription elongation by RNA polymerase II  ? ECO  
vernalization response  ? ECO  
negative regulation of flower development  ? ECO  
flower development  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets