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Gene : GAF1 A. thaliana

DB identifier  ? AT5G59980 Secondary Identifier  ? locus:2168068
Name  ? GAMETOPHYTE DEFECTIVE 1 Brief Description  Polymerase/histidinol phosphatase-like protein
TAIR Computational Description  Polymerase/histidinol phosphatase-like protein;(source:Araport11)
TAIR Curator Summary  Encodes a predicted protein subunit of RNases P/MRP that plays a role in female gametophyte development and male competence.
TAIR Short Description  Polymerase/histidinol phosphatase-like
TAIR Aliases  AtRPP30, GAF1, RPP30

2 Gene Rifs

1 Organism

7 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2844  
Location: Chr5:24147099-24149942

Gene models - GAF1 AT5G59980

? Gene models

Transcripts: 4  Exons: 27  Introns: 23 

Overlapping Features

? Genome features that overlap coordinates of this Gene

18 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
GAF1_ARATH developmental stage Expressed in seedlings, young leaves, root tips and lateral primordia (PubMed:22509260). In reproductive organs, present in the inflorescence, especially in pollen grains, nucellar cells and embryo sacs (PubMed:22509260).
GAF1_ARATH function Probable component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends (By similarity). May also be a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences (By similarity). Required for female gametophyte development and male competence (PubMed:22509260).
A0A1R7T3D1_ARATH F4JXF0_ARATH GAF1_ARATH A0A1R7T3D2_ARATH similarity Belongs to the eukaryotic/archaeal RNase P protein component 3 family.
GAF1_ARATH tissue specificity Mostly expressed in inflorescence and roots, to a lower extent in leaves, and, at low levels, in siliques, seedlings and stems.

4 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
nucleolar ribonuclease P complex  ? ECO  
mitochondrion  ? ECO  
molecular function
hydrolase activity  ? ECO  
RNA binding  ? ECO  
biological process
tRNA processing  ? ECO  
rRNA processing  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets