External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55600:CDS:6 | 482 | Chr5: 22522232-22522713 | Arabidopsis thaliana |
AT5G55600:CDS:5 | 220 | Chr5: 22522818-22523037 | Arabidopsis thaliana |
AT5G55600:CDS:4 | 780 | Chr5: 22523154-22523933 | Arabidopsis thaliana |
AT5G55600:CDS:3 | 123 | Chr5: 22524063-22524185 | Arabidopsis thaliana |
AT5G55600:CDS:2 | 92 | Chr5: 22524271-22524362 | Arabidopsis thaliana |
AT5G55600:CDS:1 | 295 | Chr5: 22524502-22524796 | Arabidopsis thaliana |
AT5G55600:CDS:6.1 | 482 | Chr5: 22522232-22522713 | Arabidopsis thaliana |
AT5G55600:CDS:5.1 | 220 | Chr5: 22522818-22523037 | Arabidopsis thaliana |
AT5G55600:CDS:4.1 | 780 | Chr5: 22523154-22523933 | Arabidopsis thaliana |
AT5G55600:CDS:3.1 | 123 | Chr5: 22524063-22524185 | Arabidopsis thaliana |
AT5G55600:CDS:2.1 | 92 | Chr5: 22524271-22524362 | Arabidopsis thaliana |
AT5G55600:CDS:1.1 | 295 | Chr5: 22524502-22524796 | Arabidopsis thaliana |
AT5G55600:CDS:6.2 | 482 | Chr5: 22522232-22522713 | Arabidopsis thaliana |
AT5G55600:CDS:5.2 | 220 | Chr5: 22522818-22523037 | Arabidopsis thaliana |
AT5G55600:CDS:4.2 | 780 | Chr5: 22523154-22523933 | Arabidopsis thaliana |
AT5G55600:CDS:3.2 | 123 | Chr5: 22524063-22524185 | Arabidopsis thaliana |
AT5G55600:CDS:2.2 | 92 | Chr5: 22524271-22524362 | Arabidopsis thaliana |
AT5G55600:CDS:1.2 | 295 | Chr5: 22524502-22524796 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55590:exon:6 | 307 | Chr5: 22521552-22521858 | Arabidopsis thaliana |
AT5G55600:exon:11 | 279 | Chr5: 22521843-22522121 | Arabidopsis thaliana |
AT5G55600:exon:2 | 1138 | Chr5: 22524502-22525639 | Arabidopsis thaliana |
AT5G55600:exon:10 | 865 | Chr5: 22521849-22522713 | Arabidopsis thaliana |
AT5G55600:exon:1 | 1184 | Chr5: 22524502-22525685 | Arabidopsis thaliana |
AT5G55600:exon:9 | 229 | Chr5: 22521853-22522081 | Arabidopsis thaliana |
AT5G55600:exon:8 | 522 | Chr5: 22522192-22522713 | Arabidopsis thaliana |
AT5G55600:exon:7 | 220 | Chr5: 22522818-22523037 | Arabidopsis thaliana |
AT5G55600:exon:6 | 780 | Chr5: 22523154-22523933 | Arabidopsis thaliana |
AT5G55600:exon:5 | 123 | Chr5: 22524063-22524185 | Arabidopsis thaliana |
AT5G55600:exon:4 | 92 | Chr5: 22524271-22524362 | Arabidopsis thaliana |
AT5G55600:exon:3 | 411 | Chr5: 22524502-22524912 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55600:five_prime_UTR:2 | 843 | Chr5: 22524797-22525639 | Arabidopsis thaliana |
AT5G55600:five_prime_UTR:1 | 889 | Chr5: 22524797-22525685 | Arabidopsis thaliana |
AT5G55600:five_prime_UTR:3 | 116 | Chr5: 22524797-22524912 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G55590 | locus:2162102 | QRT1 | QUARTET 1 | 2205 | Chr5: 22519654-22521858 | A. thaliana | Pectin lyase-like superfamily protein;(source:Araport11) | Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. | Pectin lyase-like superfamily protein | QRT1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G55590.1 | 1559 | Chr5: 22519654-22521858 |
AT5G55600.2 | 3154 | Chr5: 22521843-22525639 |
AT5G55600.1 | 3264 | Chr5: 22521849-22525685 |
AT5G55600.3 | 2377 | Chr5: 22521853-22524912 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55590:three_prime_UTR:2 | 159 | Chr5: 22521700-22521858 | Arabidopsis thaliana |
AT5G55600:three_prime_UTR:4 | 279 | Chr5: 22521843-22522121 | Arabidopsis thaliana |
AT5G55600:three_prime_UTR:3 | 383 | Chr5: 22521849-22522231 | Arabidopsis thaliana |
AT5G55600:three_prime_UTR:2 | 229 | Chr5: 22521853-22522081 | Arabidopsis thaliana |
AT5G55600:three_prime_UTR:1 | 40 | Chr5: 22522192-22522231 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
chromatin binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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