Lists
This Gene is in one list:
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G54440:CDS:1 | 64 | Chr5: 22100056-22100119 | Arabidopsis thaliana |
AT5G54440:CDS:2 | 230 | Chr5: 22100513-22100742 | Arabidopsis thaliana |
AT5G54440:CDS:3 | 182 | Chr5: 22101015-22101196 | Arabidopsis thaliana |
AT5G54440:CDS:4 | 184 | Chr5: 22101557-22101740 | Arabidopsis thaliana |
AT5G54440:CDS:5 | 91 | Chr5: 22102013-22102103 | Arabidopsis thaliana |
AT5G54440:CDS:6 | 161 | Chr5: 22102326-22102486 | Arabidopsis thaliana |
AT5G54440:CDS:7 | 90 | Chr5: 22102600-22102689 | Arabidopsis thaliana |
AT5G54440:CDS:8 | 162 | Chr5: 22102784-22102945 | Arabidopsis thaliana |
AT5G54440:CDS:9 | 62 | Chr5: 22103235-22103296 | Arabidopsis thaliana |
AT5G54440:CDS:10 | 91 | Chr5: 22103528-22103618 | Arabidopsis thaliana |
AT5G54440:CDS:11 | 164 | Chr5: 22103860-22104023 | Arabidopsis thaliana |
AT5G54440:CDS:12 | 214 | Chr5: 22104179-22104392 | Arabidopsis thaliana |
AT5G54440:CDS:13 | 546 | Chr5: 22104491-22105036 | Arabidopsis thaliana |
AT5G54440:CDS:14 | 213 | Chr5: 22105125-22105337 | Arabidopsis thaliana |
AT5G54440:CDS:15 | 391 | Chr5: 22105426-22105816 | Arabidopsis thaliana |
AT5G54440:CDS:16 | 91 | Chr5: 22105905-22105995 | Arabidopsis thaliana |
AT5G54440:CDS:17 | 85 | Chr5: 22106116-22106200 | Arabidopsis thaliana |
AT5G54440:CDS:19 | 187 | Chr5: 22106312-22106498 | Arabidopsis thaliana |
AT5G54440:CDS:21 | 302 | Chr5: 22106911-22107212 | Arabidopsis thaliana |
AT5G54440:CDS:22 | 91 | Chr5: 22107327-22107417 | Arabidopsis thaliana |
AT5G54440:CDS:23 | 179 | Chr5: 22107517-22107695 | Arabidopsis thaliana |
AT5G54440:CDS:1.1 | 64 | Chr5: 22100056-22100119 | Arabidopsis thaliana |
AT5G54440:CDS:2.1 | 230 | Chr5: 22100513-22100742 | Arabidopsis thaliana |
AT5G54440:CDS:3.1 | 182 | Chr5: 22101015-22101196 | Arabidopsis thaliana |
AT5G54440:CDS:4.1 | 184 | Chr5: 22101557-22101740 | Arabidopsis thaliana |
AT5G54440:CDS:5.1 | 91 | Chr5: 22102013-22102103 | Arabidopsis thaliana |
AT5G54440:CDS:6.1 | 161 | Chr5: 22102326-22102486 | Arabidopsis thaliana |
AT5G54440:CDS:7.1 | 90 | Chr5: 22102600-22102689 | Arabidopsis thaliana |
AT5G54440:CDS:8.1 | 162 | Chr5: 22102784-22102945 | Arabidopsis thaliana |
AT5G54440:CDS:9.1 | 62 | Chr5: 22103235-22103296 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G54430:exon:3 | 2061 | Chr5: 22097791-22099851 | Arabidopsis thaliana |
AT5G54430:exon:1 | 879 | Chr5: 22098973-22099851 | Arabidopsis thaliana |
AT5G54430:exon:5 | 2256 | Chr5: 22097519-22099774 | Arabidopsis thaliana |
AT5G54430:exon:2 | 838 | Chr5: 22098973-22099810 | Arabidopsis thaliana |
AT5G54440:exon:1 | 356 | Chr5: 22099764-22100119 | Arabidopsis thaliana |
AT5G54440:exon:26 | 333 | Chr5: 22107517-22107849 | Arabidopsis thaliana |
AT5G54440:exon:2 | 289 | Chr5: 22099831-22100119 | Arabidopsis thaliana |
AT5G54440:exon:20 | 175 | Chr5: 22106312-22106486 | Arabidopsis thaliana |
AT5G54440:exon:23 | 302 | Chr5: 22106911-22107212 | Arabidopsis thaliana |
AT5G54440:exon:24 | 91 | Chr5: 22107327-22107417 | Arabidopsis thaliana |
AT5G54440:exon:25 | 317 | Chr5: 22107517-22107833 | Arabidopsis thaliana |
AT5G54440:exon:3 | 251 | Chr5: 22099869-22100119 | Arabidopsis thaliana |
AT5G54440:exon:4 | 230 | Chr5: 22100513-22100742 | Arabidopsis thaliana |
AT5G54440:exon:5 | 182 | Chr5: 22101015-22101196 | Arabidopsis thaliana |
AT5G54440:exon:6 | 184 | Chr5: 22101557-22101740 | Arabidopsis thaliana |
AT5G54440:exon:7 | 91 | Chr5: 22102013-22102103 | Arabidopsis thaliana |
AT5G54440:exon:8 | 161 | Chr5: 22102326-22102486 | Arabidopsis thaliana |
AT5G54440:exon:9 | 90 | Chr5: 22102600-22102689 | Arabidopsis thaliana |
AT5G54440:exon:10 | 162 | Chr5: 22102784-22102945 | Arabidopsis thaliana |
AT5G54440:exon:11 | 62 | Chr5: 22103235-22103296 | Arabidopsis thaliana |
AT5G54440:exon:12 | 91 | Chr5: 22103528-22103618 | Arabidopsis thaliana |
AT5G54440:exon:13 | 164 | Chr5: 22103860-22104023 | Arabidopsis thaliana |
AT5G54440:exon:14 | 214 | Chr5: 22104179-22104392 | Arabidopsis thaliana |
AT5G54440:exon:15 | 546 | Chr5: 22104491-22105036 | Arabidopsis thaliana |
AT5G54440:exon:16 | 213 | Chr5: 22105125-22105337 | Arabidopsis thaliana |
AT5G54440:exon:17 | 391 | Chr5: 22105426-22105816 | Arabidopsis thaliana |
AT5G54440:exon:18 | 91 | Chr5: 22105905-22105995 | Arabidopsis thaliana |
AT5G54440:exon:19 | 85 | Chr5: 22106116-22106200 | Arabidopsis thaliana |
AT5G54440:exon:21 | 187 | Chr5: 22106312-22106498 | Arabidopsis thaliana |
AT5G54440:exon:22 | 317 | Chr5: 22106582-22106898 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G54430:five_prime_UTR:1 | 158 | Chr5: 22099694-22099851 | Arabidopsis thaliana |
AT5G54430:five_prime_UTR:3 | 81 | Chr5: 22099694-22099774 | Arabidopsis thaliana |
AT5G54430:five_prime_UTR:2 | 117 | Chr5: 22099694-22099810 | Arabidopsis thaliana |
AT5G54440:five_prime_UTR:1 | 292 | Chr5: 22099764-22100055 | Arabidopsis thaliana |
AT5G54440:five_prime_UTR:2 | 225 | Chr5: 22099831-22100055 | Arabidopsis thaliana |
AT5G54440:five_prime_UTR:3 | 187 | Chr5: 22099869-22100055 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G54430 | locus:2147319 | PHOS32 | 2932 | Chr5: 22096920-22099851 | A. thaliana | Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11) | Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase. | Adenine nucleotide alpha hydrolases-like superfamily protein | ATPHOS32, PHOS32 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G54430.2 | 2622 | Chr5: 22096920-22099851 |
AT5G54430.4 | 1147 | Chr5: 22096920-22099851 |
AT5G54430.3 | 1752 | Chr5: 22096920-22099851 |
AT5G54430.1 | 1440 | Chr5: 22096920-22099851 |
AT5G54430.5 | 2532 | Chr5: 22097153-22099774 |
AT5G54430.6 | 1024 | Chr5: 22097697-22099810 |
AT5G54440.1 | 4226 | Chr5: 22099764-22107849 |
AT5G54440.2 | 4131 | Chr5: 22099831-22107833 |
AT5G54440.3 | 3712 | Chr5: 22099869-22106898 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G54440:three_prime_UTR:3 | 154 | Chr5: 22107696-22107849 | Arabidopsis thaliana |
AT5G54440:three_prime_UTR:2 | 138 | Chr5: 22107696-22107833 | Arabidopsis thaliana |
AT5G54440:three_prime_UTR:1 | 300 | Chr5: 22106599-22106898 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
TR130_ARATH | function | Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells (PubMed:20609115, PubMed:21689172). Required for the polarized and selective transport of PIN2, but not PIN1, to the plasma membrane. Not required for ER-to-Golgi as well as biosynthetic and endocytic vacuolar transport (PubMed:21689172). |
TR130_ARATH | similarity | Belongs to the TMEM1 family. |
Function
Gene Ontology
cellular component | |
---|---|
trans-Golgi network | ECO |
TRAPPII protein complex | ECO |
early endosome | ECO |
molecular function | |
No terms in this category. | |
biological process | |
Golgi vesicle transport | ECO |
cell plate assembly | ECO |
cytokinesis by cell plate formation | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...