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Gene : AT5G52490 A. thaliana

DB identifier  ? AT5G52490 Secondary Identifier  ? locus:2156682
Brief Description  Fibrillarin family protein
TAIR Computational Description  Fibrillarin family protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  Fibrillarin family protein

0 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1383  
Location: Chr5:21298857-21300239

Gene models - AT5G52490 AT5G52490

? Gene models

Transcripts: 1  Exons: 5  Introns: 4 

Overlapping Features

? Genome features that overlap coordinates of this Gene

CDSs: 5, Exons: 5, mRNA: 1

6 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
FBRL3_ARATH function S-adenosyl-L-methionine-dependent methyltransferase that has the ability to methylate both RNAs and proteins. Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Also acts as a protein methyltransferase by mediating methylation of 'Gln-105' of histone H2A (H2AQ105me), a modification that impairs binding of the FACT complex and is specifically present at 35S ribosomal DNA locus (By similarity).
FBRL3_ARATH similarity Belongs to the methyltransferase superfamily. Fibrillarin family.
FBRL3_ARATH subcellular location Fibrillar region of the nucleolus.
FBRL3_ARATH tissue specificity Not detectable by RT-PCR.

1 Proteins

Function

Gene Ontology

cellular component
nucleolus  ? ECO  
ribonucleoprotein complex  ? ECO  
molecular function
methyltransferase activity  ? ECO  
RNA binding  ? ECO  
biological process
rRNA processing  ? ECO  
methylation  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets