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Gene : AT5G51170 A. thaliana

DB identifier  ? AT5G51170 Secondary Identifier  ? locus:2176162
Brief Description  U6 snRNA phosphodiesterase-like protein
TAIR Computational Description  U6 snRNA phosphodiesterase-like protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  NULL
TAIR Aliases  AtUSB1

0 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1606  
Location: Chr5:20793794-20795399 reverse strand

Gene models - AT5G51170 AT5G51170

? Gene models

Transcripts: 4  Exons: 23  Introns: 19 

Overlapping Features

? Genome features that overlap coordinates of this Gene

15 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
A0A1P8BD99_ARATH A0A178URF1_ARATH function Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA.
A0A1P8BD99_ARATH A0A178URF1_ARATH similarity Belongs to the 2H phosphoesterase superfamily. USB1 family.

4 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
nuclease activity  ? ECO  
biological process
U6 snRNA 3'-end processing  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets